Wall clock time and date at job start Mon Mar 30 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54352 * 291.62304 * 11 10 9 13 13 O 1.42104 * 110.53977 * 68.37293 * 11 10 9 14 14 C 1.76204 * 104.45087 * 179.97438 * 11 10 9 15 15 C 1.38302 * 119.96226 * 269.72818 * 14 11 10 16 16 C 1.38261 * 120.15185 * 179.72299 * 15 14 11 17 17 C 1.38129 * 120.06988 * 0.54843 * 16 15 14 18 18 C 1.38895 * 119.92795 * 359.72807 * 17 16 15 19 19 N 1.39665 * 120.07751 * 179.97438 * 18 17 16 20 20 C 1.38081 * 119.96190 * 90.00009 * 14 11 10 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 25 25 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 26 26 H 1.08005 * 119.92520 * 359.97438 * 15 14 11 27 27 H 1.07994 * 119.96836 * 180.27615 * 16 15 14 28 28 H 1.08002 * 120.03625 * 179.74668 * 17 16 15 29 29 H 0.96997 * 120.00007 * 180.02562 * 19 18 17 30 30 H 0.97004 * 119.99894 * 0.02562 * 19 18 17 31 31 H 1.08006 * 120.03853 * 359.97438 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2330 -0.0021 12 8 0.6637 -5.4199 1.2346 13 8 0.6647 -5.4194 -1.2394 14 6 2.5960 -6.4670 -0.0025 15 6 3.0852 -6.9543 -1.2008 16 6 4.0762 -7.9184 -1.2058 17 6 4.5730 -8.4063 -0.0129 18 6 4.0800 -7.9233 1.1925 19 7 4.5798 -8.4148 2.4005 20 6 3.0883 -6.9504 1.1936 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.8725 -3.6039 -0.8910 25 1 2.8713 -3.6047 0.8890 26 1 2.6950 -6.5780 -2.1350 27 1 4.4591 -8.2936 -2.1432 28 1 5.3443 -9.1624 -0.0173 29 1 4.2344 -8.0769 3.2415 30 1 5.2723 -9.0941 2.3983 31 1 2.7030 -6.5723 2.1291 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088063555.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:20 Heat of formation + Delta-G solvation = -54.817614 kcal Electronic energy + Delta-G solvation = -16294.855975 eV Core-core repulsion = 13475.088048 eV Total energy + Delta-G solvation = -2819.767927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35395 -36.51784 -35.36911 -34.63444 -33.87809 -31.24323 -31.10612 -28.73701 -25.59689 -23.38730 -22.34083 -21.43916 -18.66482 -17.75141 -17.05002 -16.60800 -16.00407 -15.33211 -15.28782 -15.15144 -14.50220 -14.12407 -13.74589 -13.42503 -13.34724 -12.51765 -12.11388 -11.73738 -11.66768 -11.49889 -11.33251 -11.06684 -11.00231 -10.91768 -10.48767 -10.36399 -10.32577 -9.69241 -9.34076 -9.06206 -8.48657 -7.72820 -6.10969 -4.16527 0.59505 0.97823 1.46681 3.27700 3.33925 3.36586 3.42163 3.60250 3.67017 4.35108 4.46212 4.61478 4.87454 4.91676 5.24393 5.26148 5.39783 5.52448 5.67389 5.75036 5.79771 6.06644 6.24064 6.33498 6.49198 6.66400 7.27970 7.32437 7.38126 7.54214 7.82212 8.18424 8.86930 9.48159 11.00044 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.005108 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.379315 B = 5480.030664 C = 5703.958479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.564 4.564 11 S 2.474 3.526 12 O -0.948 6.948 13 O -0.946 6.946 14 C -0.604 4.604 15 C -0.084 4.084 16 C -0.094 4.094 17 C -0.155 4.155 18 C 0.192 3.808 19 N -0.880 5.880 20 C -0.102 4.102 21 H 0.265 0.735 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.400 0.600 30 H 0.397 0.603 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.362 -15.683 1.545 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.697 4.697 11 S 2.657 3.343 12 O -0.945 6.945 13 O -0.943 6.943 14 C -0.689 4.689 15 C -0.105 4.105 16 C -0.114 4.114 17 C -0.178 4.178 18 C 0.087 3.913 19 N -0.420 5.420 20 C -0.126 4.126 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.143 0.857 25 H 0.141 0.859 26 H 0.157 0.843 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.229 0.771 30 H 0.225 0.775 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.307 -15.785 1.516 18.387 hybrid contribution 1.563 0.623 0.354 1.719 sum 10.870 -15.162 1.869 18.750 Atomic orbital electron populations 1.69961 1.06103 1.27193 1.49564 1.25057 0.94965 0.99498 0.94900 0.86466 0.79697 0.82856 0.78243 1.20451 1.21026 1.19777 1.21002 0.93119 0.89662 1.52184 0.91954 1.19036 0.92774 0.90349 0.99179 1.30186 1.13327 1.15652 1.10567 1.06274 0.76104 0.77312 0.74623 1.93512 1.70958 1.85531 1.44549 1.93518 1.70906 1.85504 1.44400 1.30778 1.20222 1.19436 0.98487 1.20779 0.95953 0.96940 0.96780 1.21010 0.96279 0.96512 0.97569 1.20816 1.02755 1.02780 0.91423 1.17815 0.93235 0.93397 0.86807 1.42417 1.46502 1.47981 1.05091 1.20388 0.96764 0.97816 0.97599 0.92524 0.94607 0.94556 0.85735 0.85863 0.84309 0.85324 0.85881 0.77117 0.77480 0.84334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.64 4.98 -27.88 -0.14 0.50 16 10 C -0.56 -10.78 5.92 37.16 0.22 -10.56 16 11 S 2.47 45.55 5.16 -107.50 -0.55 44.99 16 12 O -0.95 -19.76 17.13 -57.54 -0.99 -20.75 16 13 O -0.95 -19.75 17.11 -57.54 -0.98 -20.74 16 14 C -0.60 -9.31 5.66 -39.62 -0.22 -9.54 16 15 C -0.08 -1.17 9.47 -39.55 -0.37 -1.54 16 16 C -0.09 -1.08 10.04 -39.61 -0.40 -1.48 16 17 C -0.15 -1.66 9.90 -39.38 -0.39 -2.05 16 18 C 0.19 2.25 6.75 -83.79 -0.57 1.68 16 19 N -0.88 -7.18 9.09 32.41 0.29 -6.89 16 20 C -0.10 -1.44 9.32 -39.38 -0.37 -1.80 16 21 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 22 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 25 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 26 H 0.14 1.81 7.56 -52.48 -0.40 1.42 16 27 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 28 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.40 2.78 8.84 -40.82 -0.36 2.42 16 30 H 0.40 2.27 8.84 -40.82 -0.36 1.91 16 31 H 0.14 1.83 7.57 -52.48 -0.40 1.43 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -35.00 286.77 -8.43 -43.44 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.59 Total: 2.98 kcal Atomic # 6 Polarization: -35.19 SS G_CDS: -2.65 Total: -37.83 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 1.03 Total: -32.49 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -1.97 Total: -41.48 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 45.55 SS G_CDS: -0.55 Total: 44.99 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -35.00 -8.43 -43.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063555.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.379 kcal (2) G-P(sol) polarization free energy of solvation -35.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds