Wall clock time and date at job start Mon Mar 30 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 S 1.81399 * 109.47147 * 179.97438 * 10 9 7 12 12 O 1.42106 * 110.54352 * 291.62304 * 11 10 9 13 13 O 1.42104 * 110.53977 * 68.37293 * 11 10 9 14 14 C 1.76204 * 104.45087 * 179.97438 * 11 10 9 15 15 C 1.38302 * 119.96226 * 269.72818 * 14 11 10 16 16 C 1.38261 * 120.15185 * 179.72299 * 15 14 11 17 17 C 1.38129 * 120.06988 * 0.54843 * 16 15 14 18 18 C 1.38895 * 119.92795 * 359.72807 * 17 16 15 19 19 N 1.39665 * 120.07751 * 179.97438 * 18 17 16 20 20 C 1.38081 * 119.96190 * 90.00009 * 14 11 10 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 25 25 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 26 26 H 1.08005 * 119.92520 * 359.97438 * 15 14 11 27 27 H 1.07994 * 119.96836 * 180.27615 * 16 15 14 28 28 H 1.08002 * 120.03625 * 179.74668 * 17 16 15 29 29 H 0.96997 * 120.00007 * 180.02562 * 19 18 17 30 30 H 0.97004 * 119.99894 * 0.02562 * 19 18 17 31 31 H 1.08006 * 120.03853 * 359.97438 * 20 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 16 1.3382 -5.2330 -0.0021 12 8 0.6637 -5.4199 1.2346 13 8 0.6647 -5.4194 -1.2394 14 6 2.5960 -6.4670 -0.0025 15 6 3.0852 -6.9543 -1.2008 16 6 4.0762 -7.9184 -1.2058 17 6 4.5730 -8.4063 -0.0129 18 6 4.0800 -7.9233 1.1925 19 7 4.5798 -8.4148 2.4005 20 6 3.0883 -6.9504 1.1936 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 2.8725 -3.6039 -0.8910 25 1 2.8713 -3.6047 0.8890 26 1 2.6950 -6.5780 -2.1350 27 1 4.4591 -8.2936 -2.1432 28 1 5.3443 -9.1624 -0.0173 29 1 4.2344 -8.0769 3.2415 30 1 5.2723 -9.0941 2.3983 31 1 2.7030 -6.5723 2.1291 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088063555.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:19 Heat of formation + Delta-G solvation = -81.514062 kcal Electronic energy + Delta-G solvation = -16296.013620 eV Core-core repulsion = 13475.088048 eV Total energy + Delta-G solvation = -2820.925572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.28094 -38.09818 -36.95021 -35.88145 -35.47794 -33.12058 -32.17327 -29.61785 -27.58351 -24.52276 -23.43240 -23.10938 -19.99194 -19.17873 -18.43141 -17.87747 -17.02554 -16.88725 -16.75049 -16.55613 -16.17589 -15.27251 -14.91278 -14.63173 -14.50719 -14.31495 -13.70541 -13.15769 -13.12433 -13.06521 -12.91111 -12.77703 -12.51774 -12.22852 -12.11225 -11.96159 -11.73155 -11.55893 -11.00368 -10.62525 -10.21822 -8.55916 -8.24071 -6.38161 -0.84643 -0.08385 0.52406 1.42864 1.44811 1.55890 2.06735 2.39905 2.57774 2.92365 3.01019 3.09555 3.28263 3.89251 4.04805 4.09641 4.17021 4.28233 4.51747 4.65772 4.76652 4.86004 5.12205 5.25265 5.29076 5.30731 5.42092 5.70280 5.79461 6.07455 6.50978 6.75371 6.97987 7.31941 8.88338 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.031404 B = 0.005108 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.379315 B = 5480.030664 C = 5703.958479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.017 3.983 10 C -0.561 4.561 11 S 2.489 3.511 12 O -0.981 6.981 13 O -0.979 6.979 14 C -0.607 4.607 15 C -0.105 4.105 16 C -0.088 4.088 17 C -0.147 4.147 18 C 0.194 3.806 19 N -0.866 5.866 20 C -0.128 4.128 21 H 0.267 0.733 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.147 0.853 25 H 0.145 0.855 26 H 0.139 0.861 27 H 0.163 0.837 28 H 0.162 0.838 29 H 0.407 0.593 30 H 0.412 0.588 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.620 -17.036 1.551 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.694 4.694 11 S 2.677 3.323 12 O -0.979 6.979 13 O -0.976 6.976 14 C -0.697 4.697 15 C -0.126 4.126 16 C -0.108 4.108 17 C -0.169 4.169 18 C 0.087 3.913 19 N -0.407 5.407 20 C -0.152 4.152 21 H 0.076 0.924 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.165 0.835 25 H 0.163 0.837 26 H 0.157 0.843 27 H 0.181 0.819 28 H 0.179 0.821 29 H 0.236 0.764 30 H 0.243 0.757 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.553 -17.116 1.547 21.282 hybrid contribution 0.632 0.867 0.379 1.138 sum 13.185 -16.249 1.925 21.014 Atomic orbital electron populations 1.70111 1.08085 1.28328 1.50874 1.26107 0.95839 1.03833 0.94337 0.85299 0.78610 0.77611 0.78648 1.19560 1.20852 1.18179 1.21515 0.94048 0.90666 1.51591 0.90508 1.18898 0.93663 0.92832 0.96725 1.30055 1.12348 1.14162 1.12803 1.05272 0.76468 0.77382 0.73218 1.93458 1.72723 1.86010 1.45671 1.93465 1.72655 1.85992 1.45509 1.29985 1.20337 1.19304 1.00114 1.20986 0.97226 0.98323 0.96104 1.21405 0.94799 0.95033 0.99523 1.21296 1.02615 1.02516 0.90498 1.17926 0.92322 0.92500 0.88505 1.42417 1.46245 1.47677 1.04338 1.20483 0.98294 0.99470 0.96977 0.92381 0.97225 0.97162 0.83479 0.83683 0.84320 0.81924 0.82078 0.76392 0.75687 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.54 -30.03 9.11 25.60 0.23 -29.80 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 9 C 0.02 0.92 4.98 29.85 0.15 1.07 16 10 C -0.56 -21.87 5.92 71.98 0.43 -21.45 16 11 S 2.49 95.07 5.16 -56.49 -0.29 94.78 16 12 O -0.98 -42.85 17.13 -127.65 -2.19 -45.04 16 13 O -0.98 -42.72 17.11 -127.65 -2.18 -44.90 16 14 C -0.61 -18.42 5.66 22.25 0.13 -18.29 16 15 C -0.11 -2.77 9.47 22.29 0.21 -2.56 16 16 C -0.09 -1.69 10.04 22.25 0.22 -1.47 16 17 C -0.15 -2.50 9.90 22.40 0.22 -2.28 16 18 C 0.19 3.95 6.75 38.22 0.26 4.21 16 19 N -0.87 -11.18 9.09 -51.37 -0.47 -11.65 16 20 C -0.13 -3.45 9.32 22.40 0.21 -3.24 16 21 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 22 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.15 4.98 8.14 -2.39 -0.02 4.96 16 25 H 0.15 4.93 8.14 -2.39 -0.02 4.91 16 26 H 0.14 3.54 7.56 -2.91 -0.02 3.52 16 27 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 29 H 0.41 4.55 8.84 -92.71 -0.82 3.73 16 30 H 0.41 2.97 8.84 -92.71 -0.82 2.15 16 31 H 0.14 3.59 7.57 -2.91 -0.02 3.57 16 Total: -1.00 -77.82 286.77 -0.78 -78.60 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -0.48 Total: 13.17 kcal Atomic # 6 Polarization: -76.03 SS G_CDS: 2.52 Total: -73.51 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -0.18 Total: -68.47 kcal Atomic # 8 Polarization: -85.57 SS G_CDS: -4.37 Total: -89.94 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 95.07 SS G_CDS: -0.29 Total: 94.78 kcal Total: -77.82 -0.78 -78.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088063555.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.911 kcal (2) G-P(sol) polarization free energy of solvation -77.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds