Wall clock time and date at job start Mon Mar 30 2020 04:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48497 * 109.47003 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46951 * 300.00735 * 3 2 1 6 6 H 1.48501 * 109.46752 * 60.00621 * 3 2 1 7 7 C 1.37883 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00125 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46792 * 60.00473 * 9 7 2 11 11 N 1.46903 * 109.46937 * 300.00573 * 9 7 2 12 12 C 1.50699 * 109.47205 * 180.02562 * 9 7 2 13 13 C 1.38286 * 119.93236 * 100.23035 * 12 9 7 14 14 C 1.38501 * 120.04318 * 180.25539 * 13 12 9 15 15 C 1.39308 * 119.84839 * 359.78873 * 14 13 12 16 16 C 1.38503 * 119.84014 * 359.97438 * 15 14 13 17 17 C 1.38308 * 119.93453 * 280.00164 * 12 9 7 18 18 Cl 1.73599 * 119.94542 * 359.97438 * 17 12 9 19 19 O 1.36498 * 108.63782 * 179.97438 * 15 14 13 20 20 C 1.43991 * 105.48835 * 17.28897 * 19 15 14 21 21 O 1.36523 * 131.52423 * 179.76350 * 14 13 12 22 22 H 0.96996 * 120.00337 * 359.97438 * 1 2 3 23 23 H 1.00908 * 110.99561 * 176.04524 * 11 9 7 24 24 H 1.00901 * 110.99947 * 299.99349 * 11 9 7 25 25 H 1.07995 * 119.97860 * 0.05137 * 13 12 9 26 26 H 1.08006 * 119.99299 * 179.97438 * 16 15 14 27 27 H 1.09005 * 110.56776 * 91.42639 * 20 19 15 28 28 H 1.08987 * 110.57314 * 214.15114 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2302 -3.6447 -0.0005 13 6 2.5168 -4.3075 1.1788 14 6 3.4204 -5.3571 1.1824 15 6 4.0361 -5.7460 -0.0052 16 6 3.7413 -5.0815 -1.1841 17 6 2.8369 -4.0340 -1.1809 18 17 2.4686 -3.2028 -2.6598 19 8 4.8742 -6.7903 0.2596 20 6 4.4593 -7.3012 1.5403 21 8 3.8731 -6.1582 2.1910 22 1 -0.4850 0.8400 0.0004 23 1 -0.1572 -3.4139 1.1906 24 1 0.9651 -2.5260 2.0381 25 1 2.0382 -4.0043 2.0982 26 1 4.2175 -5.3807 -2.1061 27 1 3.7196 -8.0921 1.4158 28 1 5.3180 -7.6666 2.1034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095684477.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:10 Heat of formation + Delta-G solvation = -53.656414 kcal Electronic energy + Delta-G solvation = -16598.659413 eV Core-core repulsion = 13641.065038 eV Total energy + Delta-G solvation = -2957.594375 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.17511 -39.65991 -37.36395 -37.14448 -35.98540 -33.57528 -31.24924 -30.49650 -28.07384 -26.67002 -24.81894 -23.85281 -22.19979 -19.08457 -18.66486 -18.52747 -18.30289 -17.33092 -16.52368 -16.03283 -15.89660 -15.41340 -15.11006 -14.93991 -14.46650 -14.10860 -14.06231 -13.96167 -13.22444 -12.86762 -12.73077 -12.61088 -12.29356 -12.00770 -11.61490 -11.47093 -11.00136 -10.49868 -9.85721 -9.00838 -8.90127 -7.92729 -6.11355 -0.03231 0.11013 1.13315 1.44167 1.47917 1.56939 1.85363 2.38051 2.52004 2.56288 3.31800 3.37783 3.79681 3.96574 4.01208 4.11519 4.21429 4.38423 4.52890 4.78887 4.90279 4.97614 5.13156 5.24578 5.57572 5.81648 6.02202 6.20287 6.68453 7.12053 7.27265 7.59041 9.10788 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.007163 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.125100 B = 3907.834797 C = 4334.974654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.043 3.957 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.524 4.524 8 H 0.042 0.958 9 C 0.265 3.735 10 H 0.036 0.964 11 N -0.821 5.821 12 C -0.072 4.072 13 C -0.106 4.106 14 C 0.035 3.965 15 C 0.018 3.982 16 C -0.090 4.090 17 C -0.037 4.037 18 Cl -0.050 7.050 19 O -0.316 6.316 20 C 0.203 3.797 21 O -0.319 6.319 22 H 0.254 0.746 23 H 0.315 0.685 24 H 0.325 0.675 25 H 0.143 0.857 26 H 0.160 0.840 27 H 0.107 0.893 28 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 -13.812 0.804 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.161 4.161 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.061 0.939 9 C 0.154 3.846 10 H 0.054 0.946 11 N -0.349 5.349 12 C -0.076 4.076 13 C -0.125 4.125 14 C -0.010 4.010 15 C -0.027 4.027 16 C -0.109 4.109 17 C -0.064 4.064 18 Cl -0.021 7.021 19 O -0.233 6.233 20 C 0.093 3.907 21 O -0.236 6.236 22 H 0.064 0.936 23 H 0.127 0.873 24 H 0.139 0.861 25 H 0.161 0.839 26 H 0.178 0.822 27 H 0.124 0.876 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.713 -13.028 0.537 14.666 hybrid contribution 0.868 0.093 0.147 0.885 sum 7.581 -12.936 0.684 15.009 Atomic orbital electron populations 1.70203 1.06723 1.26109 1.48217 1.25491 0.95262 1.01123 0.94221 0.85854 0.79208 0.81175 0.77376 1.19731 1.20893 1.20906 1.20888 0.91679 0.90350 1.53332 0.93944 1.17939 0.87428 0.88342 0.90869 0.94601 1.58952 1.28364 1.43365 1.04219 1.21270 0.98688 0.96847 0.90755 1.19849 0.98249 0.95366 0.99082 1.19811 0.98226 0.96789 0.86148 1.19415 0.94890 0.94051 0.94353 1.19866 0.98653 0.95545 0.96877 1.20322 1.00901 0.96488 0.88714 1.98352 1.93582 1.77721 1.32483 1.87304 1.52192 1.44854 1.38903 1.26199 0.99795 0.87271 0.77426 1.87333 1.73727 1.32986 1.29557 0.93649 0.87312 0.86138 0.83930 0.82207 0.87569 0.81588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.06 12.77 21.45 0.27 -49.79 15 2 C 0.04 2.33 5.39 84.66 0.46 2.78 15 3 Si 0.94 43.56 29.54 68.60 2.03 45.58 15 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 7 C -0.52 -27.78 8.47 25.60 0.22 -27.56 15 8 H 0.04 2.31 7.74 -2.91 -0.02 2.28 15 9 C 0.26 12.55 2.30 43.42 0.10 12.65 15 10 H 0.04 1.91 7.34 -2.39 -0.02 1.89 15 11 N -0.82 -36.69 8.01 -174.95 -1.40 -38.10 15 12 C -0.07 -2.91 5.02 -19.84 -0.10 -3.01 15 13 C -0.11 -3.83 9.25 22.34 0.21 -3.63 15 14 C 0.03 1.15 7.15 22.59 0.16 1.31 15 15 C 0.02 0.55 7.15 22.59 0.16 0.71 15 16 C -0.09 -2.88 9.84 22.37 0.22 -2.66 15 17 C -0.04 -1.37 6.30 22.32 0.14 -1.23 15 18 Cl -0.05 -1.90 27.30 -2.72 -0.07 -1.97 15 19 O -0.32 -8.34 11.40 -76.03 -0.87 -9.21 15 20 C 0.20 3.89 8.89 113.37 1.01 4.89 15 21 O -0.32 -8.93 11.40 -76.32 -0.87 -9.80 15 22 H 0.25 13.96 8.31 -92.71 -0.77 13.19 15 23 H 0.32 12.40 9.05 -89.69 -0.81 11.58 15 24 H 0.32 13.72 7.28 -89.69 -0.65 13.07 15 25 H 0.14 4.87 6.24 -2.91 -0.02 4.85 15 26 H 0.16 4.25 8.06 -2.91 -0.02 4.23 15 27 H 0.11 1.49 8.14 -2.38 -0.02 1.47 15 28 H 0.17 1.83 8.14 -2.39 -0.02 1.81 15 Total: -1.00 -62.42 261.82 1.42 -61.00 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -0.24 Total: 18.03 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 2.57 Total: -15.74 kcal Atomic # 7 Polarization: -86.75 SS G_CDS: -1.13 Total: -87.88 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -1.74 Total: -19.01 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -62.42 1.42 -61.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095684477.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.339 kcal (2) G-P(sol) polarization free energy of solvation -62.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds