Wall clock time and date at job start Mon Mar 30 2020 04:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35652 * 116.99750 * 179.97438 * 10 9 7 12 12 C 1.38643 * 120.14623 * 359.72762 * 11 10 9 13 13 C 1.38204 * 120.07881 * 179.74183 * 12 11 10 14 14 Cl 1.73592 * 119.82636 * 180.25635 * 13 12 11 15 15 C 1.38709 * 120.35645 * 0.51266 * 13 12 11 16 16 C 1.37727 * 120.28744 * 359.76612 * 15 13 12 17 17 C 1.39747 * 119.92162 * 359.97438 * 16 15 13 18 18 C 1.47475 * 120.17793 * 179.97438 * 17 16 15 19 19 N 1.34778 * 120.00083 * 0.02562 * 18 17 16 20 20 O 1.21596 * 119.99524 * 180.02562 * 18 17 16 21 21 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08011 * 119.96162 * 0.02562 * 12 11 10 25 25 H 1.07996 * 119.85420 * 179.74852 * 15 13 12 26 26 H 1.07993 * 120.04027 * 179.97438 * 16 15 13 27 27 H 0.96992 * 119.99865 * 359.97438 * 19 18 17 28 28 H 0.96999 * 119.99476 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.3325 -2.7193 -0.0001 12 6 6.1799 -1.6220 -0.0058 13 6 7.5498 -1.8048 -0.0004 14 17 8.6047 -0.4262 -0.0008 15 6 8.0864 -3.0839 -0.0001 16 6 7.2584 -4.1845 -0.0003 17 6 5.8715 -4.0134 -0.0002 18 6 4.9796 -5.1879 -0.0010 19 7 5.5017 -6.4305 -0.0012 20 8 3.7733 -5.0352 -0.0014 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 -0.8895 23 1 3.8745 -0.6810 0.8905 24 1 5.7690 -0.6232 -0.0097 25 1 9.1581 -3.2173 -0.0001 26 1 7.6805 -5.1785 -0.0005 27 1 6.4640 -6.5522 -0.0012 28 1 4.9150 -7.2029 -0.0013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154624232.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:33 Heat of formation + Delta-G solvation = -57.674486 kcal Electronic energy + Delta-G solvation = -16204.216664 eV Core-core repulsion = 13246.448052 eV Total energy + Delta-G solvation = -2957.768612 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.28003 -38.39592 -37.36118 -36.22323 -33.53454 -32.82488 -30.81207 -30.12763 -28.21267 -24.02769 -23.29218 -21.40179 -20.50398 -18.48934 -17.21664 -16.89516 -16.48992 -15.68657 -15.24113 -14.95547 -14.73455 -14.31078 -14.15050 -13.45841 -13.16030 -13.03921 -12.55299 -12.07120 -11.66240 -11.41219 -11.11339 -11.03969 -10.99624 -10.32437 -10.01004 -9.68705 -9.49777 -9.33727 -8.91850 -8.74427 -7.98087 -6.20970 -4.22962 0.75673 1.41894 2.01021 2.99936 3.17797 3.23605 3.25334 3.63749 3.88159 3.90211 4.25244 4.67637 4.91302 5.06042 5.08001 5.16839 5.51120 5.56985 5.98391 6.07135 6.16138 6.29981 6.59520 6.64567 6.93986 7.34206 7.47404 7.87514 8.46906 8.54302 8.93457 9.33865 10.91421 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.008108 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.956568 B = 3452.467345 C = 5148.278950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.079 3.921 3 Si 0.870 3.130 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.158 3.842 10 O -0.256 6.256 11 C 0.219 3.781 12 C -0.219 4.219 13 C 0.034 3.966 14 Cl -0.070 7.070 15 C -0.178 4.178 16 C -0.036 4.036 17 C -0.190 4.190 18 C 0.559 3.441 19 N -0.861 5.861 20 O -0.501 6.501 21 H 0.269 0.731 22 H 0.018 0.982 23 H 0.022 0.978 24 H 0.147 0.853 25 H 0.135 0.865 26 H 0.137 0.863 27 H 0.394 0.606 28 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.329 -7.191 0.009 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.124 4.124 3 Si 0.696 3.304 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.109 0.891 9 C 0.085 3.915 10 O -0.165 6.165 11 C 0.166 3.834 12 C -0.239 4.239 13 C 0.007 3.993 14 Cl -0.041 7.041 15 C -0.197 4.197 16 C -0.054 4.054 17 C -0.195 4.195 18 C 0.345 3.655 19 N -0.427 5.427 20 O -0.375 6.375 21 H 0.080 0.920 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.164 0.836 25 H 0.153 0.847 26 H 0.154 0.846 27 H 0.223 0.777 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 18.250 -6.758 0.011 19.462 hybrid contribution 0.898 0.976 -0.010 1.326 sum 19.148 -5.782 0.001 20.002 Atomic orbital electron populations 1.69852 1.05999 1.27326 1.49163 1.24688 0.94822 0.98517 0.94372 0.86946 0.80468 0.83921 0.79081 1.19560 1.20354 1.18941 1.20747 0.87065 0.96020 1.52430 0.89111 1.21227 0.97333 0.76931 0.96040 1.86475 1.14327 1.32734 1.82914 1.19154 0.85435 0.91558 0.87225 1.21286 0.91833 1.00304 1.10456 1.20859 0.90480 0.88376 0.99545 1.98370 1.65874 1.43250 1.96572 1.20674 1.00432 0.90044 1.08554 1.20941 0.91000 0.98605 0.94901 1.19343 0.93391 0.91694 1.15022 1.17959 0.87972 0.83027 0.76566 1.43737 1.11184 1.07746 1.80068 1.90989 1.14221 1.85544 1.46715 0.92046 0.96457 0.95998 0.83552 0.84669 0.84576 0.77700 0.76732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.36 15 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 15 3 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 15 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 6 H -0.26 -5.97 6.54 56.52 0.37 -5.60 15 7 C -0.52 -15.60 9.99 -34.44 -0.34 -15.95 15 8 H 0.09 3.02 8.06 -52.49 -0.42 2.59 15 9 C 0.16 3.97 3.56 36.01 0.13 4.10 15 10 O -0.26 -6.23 8.19 -40.55 -0.33 -6.56 15 11 C 0.22 4.25 6.70 -38.70 -0.26 3.99 15 12 C -0.22 -3.75 8.80 -39.44 -0.35 -4.10 15 13 C 0.03 0.48 6.32 -39.42 -0.25 0.23 15 14 Cl -0.07 -0.88 28.94 -51.86 -1.50 -2.38 15 15 C -0.18 -2.04 9.80 -39.59 -0.39 -2.42 15 16 C -0.04 -0.40 9.53 -39.20 -0.37 -0.77 15 17 C -0.19 -3.05 5.89 -104.84 -0.62 -3.67 15 18 C 0.56 9.35 8.03 -12.50 -0.10 9.25 15 19 N -0.86 -9.00 8.82 30.44 0.27 -8.73 15 20 O -0.50 -11.33 15.99 -16.61 -0.27 -11.60 15 21 H 0.27 7.60 8.31 -40.82 -0.34 7.26 15 22 H 0.02 0.42 7.07 -51.93 -0.37 0.05 15 23 H 0.02 0.54 6.73 -51.93 -0.35 0.19 15 24 H 0.15 2.58 6.30 -52.48 -0.33 2.25 15 25 H 0.14 1.15 8.06 -52.49 -0.42 0.73 15 26 H 0.14 0.92 6.40 -52.49 -0.34 0.58 15 27 H 0.39 2.59 6.86 -40.82 -0.28 2.31 15 28 H 0.40 3.69 8.93 -40.82 -0.36 3.32 15 LS Contribution 264.94 15.07 3.99 3.99 Total: -1.00 -34.56 264.94 -6.42 -40.98 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -2.04 Total: 1.65 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.65 Total: -7.13 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 1.04 Total: -35.10 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.60 Total: -18.15 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.56 -6.42 -40.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154624232.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.692 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds