Wall clock time and date at job start Mon Mar 30 2020 04:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.35652 * 116.99750 * 179.97438 * 10 9 7 12 12 C 1.38643 * 120.14623 * 359.72762 * 11 10 9 13 13 C 1.38204 * 120.07881 * 179.74183 * 12 11 10 14 14 Cl 1.73592 * 119.82636 * 180.25635 * 13 12 11 15 15 C 1.38709 * 120.35645 * 0.51266 * 13 12 11 16 16 C 1.37727 * 120.28744 * 359.76612 * 15 13 12 17 17 C 1.39747 * 119.92162 * 359.97438 * 16 15 13 18 18 C 1.47475 * 120.17793 * 179.97438 * 17 16 15 19 19 N 1.34778 * 120.00083 * 0.02562 * 18 17 16 20 20 O 1.21596 * 119.99524 * 180.02562 * 18 17 16 21 21 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08011 * 119.96162 * 0.02562 * 12 11 10 25 25 H 1.07996 * 119.85420 * 179.74852 * 15 13 12 26 26 H 1.07993 * 120.04027 * 179.97438 * 16 15 13 27 27 H 0.96992 * 119.99865 * 359.97438 * 19 18 17 28 28 H 0.96999 * 119.99476 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 8 3.9877 -2.5415 -0.0001 11 6 5.3325 -2.7193 -0.0001 12 6 6.1799 -1.6220 -0.0058 13 6 7.5498 -1.8048 -0.0004 14 17 8.6047 -0.4262 -0.0008 15 6 8.0864 -3.0839 -0.0001 16 6 7.2584 -4.1845 -0.0003 17 6 5.8715 -4.0134 -0.0002 18 6 4.9796 -5.1879 -0.0010 19 7 5.5017 -6.4305 -0.0012 20 8 3.7733 -5.0352 -0.0014 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 -0.8895 23 1 3.8745 -0.6810 0.8905 24 1 5.7690 -0.6232 -0.0097 25 1 9.1581 -3.2173 -0.0001 26 1 7.6805 -5.1785 -0.0005 27 1 6.4640 -6.5522 -0.0012 28 1 4.9150 -7.2029 -0.0013 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154624232.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:32 Heat of formation + Delta-G solvation = -84.511408 kcal Electronic energy + Delta-G solvation = -16205.380400 eV Core-core repulsion = 13246.448052 eV Total energy + Delta-G solvation = -2958.932348 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.58193 -39.79618 -38.66930 -37.34096 -35.05833 -34.71236 -32.00923 -31.50308 -30.06478 -25.32258 -24.93989 -22.89981 -21.74950 -19.86969 -18.90253 -18.33906 -17.87349 -17.09373 -16.84249 -16.24559 -16.07330 -15.91844 -15.59947 -14.81548 -14.60064 -14.34098 -14.18364 -13.32189 -13.24747 -13.12973 -12.69789 -12.56334 -12.04269 -11.92831 -11.76316 -11.59531 -11.01839 -10.93472 -10.64605 -10.03786 -9.29996 -8.45369 -6.56883 -0.39754 0.26720 0.94663 1.27985 1.32001 1.41884 1.78278 2.21903 2.38102 2.57718 2.70028 2.85871 3.64708 3.87954 3.94550 4.02126 4.28371 4.40076 4.50930 4.68730 4.91351 5.02955 5.10603 5.24797 5.51401 5.90036 5.95650 6.47253 6.50959 6.66722 7.06264 7.43753 8.72050 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.016361 B = 0.008108 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.956568 B = 3452.467345 C = 5148.278950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.021 3.979 3 Si 0.952 3.048 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.242 1.242 7 C -0.554 4.554 8 H 0.027 0.973 9 C 0.174 3.826 10 O -0.299 6.299 11 C 0.171 3.829 12 C -0.233 4.233 13 C 0.032 3.968 14 Cl -0.053 7.053 15 C -0.154 4.154 16 C -0.011 4.011 17 C -0.202 4.202 18 C 0.554 3.446 19 N -0.826 5.826 20 O -0.577 6.577 21 H 0.277 0.723 22 H 0.029 0.971 23 H 0.031 0.969 24 H 0.134 0.866 25 H 0.181 0.819 26 H 0.194 0.806 27 H 0.418 0.582 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.193 -7.079 0.002 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.165 1.165 7 C -0.591 4.591 8 H 0.046 0.954 9 C 0.101 3.899 10 O -0.210 6.210 11 C 0.121 3.879 12 C -0.253 4.253 13 C 0.005 3.995 14 Cl -0.024 7.024 15 C -0.172 4.172 16 C -0.029 4.029 17 C -0.206 4.206 18 C 0.340 3.660 19 N -0.393 5.393 20 O -0.457 6.457 21 H 0.086 0.914 22 H 0.047 0.953 23 H 0.048 0.952 24 H 0.151 0.849 25 H 0.199 0.801 26 H 0.211 0.789 27 H 0.251 0.749 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 23.205 -6.719 0.004 24.159 hybrid contribution -0.454 0.742 -0.010 0.869 sum 22.752 -5.977 -0.006 23.524 Atomic orbital electron populations 1.70018 1.08322 1.29143 1.49920 1.25812 0.95848 1.03272 0.92913 0.85665 0.79642 0.77213 0.80268 1.17830 1.19181 1.16477 1.20958 0.90047 0.94219 1.53909 0.95426 1.20801 0.94080 0.78459 0.96606 1.86395 1.17913 1.31435 1.85219 1.19616 0.83668 0.93953 0.90698 1.21182 0.93233 0.99009 1.11829 1.21041 0.89499 0.90166 0.98807 1.98380 1.64804 1.42817 1.96402 1.21257 1.02634 0.88509 1.04817 1.21521 0.88331 1.01421 0.91613 1.19616 0.95451 0.90112 1.15405 1.18275 0.87129 0.84836 0.75741 1.43407 1.12748 1.05956 1.77175 1.90970 1.17389 1.86741 1.50591 0.91383 0.95289 0.95177 0.84853 0.80132 0.78924 0.74853 0.75650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.16 13.96 21.45 0.30 -59.86 15 2 C 0.02 1.25 5.47 84.66 0.46 1.71 15 3 Si 0.95 43.46 27.47 68.60 1.88 45.34 15 4 H -0.25 -10.91 7.11 99.48 0.71 -10.20 15 5 H -0.27 -11.64 7.11 99.48 0.71 -10.93 15 6 H -0.24 -10.04 6.54 99.48 0.65 -9.39 15 7 C -0.55 -35.41 9.99 25.60 0.26 -35.15 15 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 15 9 C 0.17 9.20 3.56 71.24 0.25 9.46 15 10 O -0.30 -15.56 8.19 -68.74 -0.56 -16.13 15 11 C 0.17 6.76 6.70 22.84 0.15 6.91 15 12 C -0.23 -7.80 8.80 22.36 0.20 -7.61 15 13 C 0.03 0.79 6.32 22.37 0.14 0.94 15 14 Cl -0.05 -1.16 28.94 -2.72 -0.08 -1.23 15 15 C -0.15 -2.67 9.80 22.26 0.22 -2.45 15 16 C -0.01 -0.19 9.53 22.51 0.21 0.03 15 17 C -0.20 -6.21 5.89 -20.01 -0.12 -6.33 15 18 C 0.55 18.48 8.03 86.68 0.70 19.17 15 19 N -0.83 -15.20 8.82 -175.85 -1.55 -16.75 15 20 O -0.58 -27.86 15.99 16.91 0.27 -27.59 15 21 H 0.28 16.17 8.31 -92.71 -0.77 15.40 15 22 H 0.03 1.44 7.07 -2.39 -0.02 1.42 15 23 H 0.03 1.51 6.73 -2.39 -0.02 1.49 15 24 H 0.13 4.69 6.30 -2.90 -0.02 4.67 15 25 H 0.18 1.65 8.06 -2.91 -0.02 1.62 15 26 H 0.19 1.12 6.40 -2.91 -0.02 1.10 15 27 H 0.42 3.47 6.86 -92.71 -0.64 2.84 15 28 H 0.41 6.75 8.93 -92.71 -0.83 5.92 15 Total: -1.00 -86.03 264.94 2.45 -83.58 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -0.29 Total: 5.95 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: 2.48 Total: -13.31 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.25 Total: -76.62 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.29 Total: -43.71 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.23 kcal Total: -86.03 2.45 -83.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154624232.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.928 kcal (2) G-P(sol) polarization free energy of solvation -86.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds