Wall clock time and date at job start Mon Mar 30 2020 04:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47299 * 270.00287 * 3 2 1 5 5 H 1.48506 * 109.46984 * 30.00098 * 3 2 1 6 6 H 1.48499 * 109.46958 * 149.99615 * 3 2 1 7 7 C 1.37872 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00227 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00211 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.40117 * 71.67117 * 9 7 2 11 11 O 1.42099 * 106.40504 * 298.75191 * 9 7 2 12 12 N 1.65598 * 107.21961 * 185.20938 * 9 7 2 13 13 C 1.39708 * 120.00616 * 298.50719 * 12 9 7 14 14 C 1.39067 * 119.98946 * 313.78740 * 13 12 9 15 15 C 1.38245 * 120.28066 * 180.02562 * 14 13 12 16 16 C 1.37952 * 120.25577 * 359.97438 * 15 14 13 17 17 C 1.39850 * 119.97457 * 359.97438 * 16 15 14 18 18 C 1.47187 * 120.13819 * 180.02562 * 17 16 15 19 19 O 1.21248 * 120.00157 * 179.97438 * 18 17 16 20 20 C 1.38568 * 119.99632 * 133.80096 * 13 12 9 21 21 H 0.97008 * 120.00267 * 359.97438 * 1 2 3 22 22 H 0.97006 * 120.00104 * 118.50960 * 12 9 7 23 23 H 1.08004 * 119.86180 * 0.03664 * 14 13 12 24 24 H 1.07998 * 119.87679 * 179.97438 * 15 14 13 25 25 H 1.07999 * 120.01756 * 180.02562 * 16 15 14 26 26 H 1.08001 * 119.99828 * 359.97438 * 18 17 16 27 27 H 1.08003 * 120.12378 * 0.26304 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7664 -1.1941 0.0001 10 8 4.1672 -0.7663 1.2946 11 8 4.1682 -0.5376 -1.1943 12 7 4.2567 -2.7692 -0.1443 13 6 3.9116 -3.7012 0.8375 14 6 4.0657 -3.3832 2.1826 15 6 3.7266 -4.3011 3.1592 16 6 3.2320 -5.5399 2.8071 17 6 3.0716 -5.8704 1.4577 18 6 2.5437 -7.1909 1.0781 19 8 2.4052 -7.4747 -0.0926 20 6 3.4160 -4.9423 0.4711 21 1 -0.4851 0.8401 0.0004 22 1 4.7836 -3.0448 -0.9108 23 1 4.4518 -2.4151 2.4655 24 1 3.8494 -4.0475 4.2017 25 1 2.9679 -6.2538 3.5732 26 1 2.2797 -7.9069 1.8422 27 1 3.2998 -5.1927 -0.5731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236405987.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:25 Heat of formation + Delta-G solvation = -85.832133 kcal Electronic energy + Delta-G solvation = -16507.948233 eV Core-core repulsion = 13551.002321 eV Total energy + Delta-G solvation = -2956.945912 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71577 -38.19297 -35.84666 -34.67588 -34.57479 -33.11370 -31.00530 -28.94924 -26.50576 -24.75871 -22.20845 -21.01341 -19.22538 -17.88612 -17.41097 -16.85027 -16.12682 -15.72094 -15.33287 -14.85480 -14.27610 -14.14421 -14.00327 -13.57057 -13.45123 -12.94190 -12.56304 -12.12449 -11.54196 -11.40771 -11.32118 -10.98807 -10.73812 -10.60028 -10.30020 -10.02829 -9.66704 -9.30385 -9.14762 -8.80209 -8.06166 -6.87475 -5.43713 0.79667 1.45718 1.88427 2.57843 3.01765 3.10807 3.18130 3.87016 3.95671 4.02412 4.29750 4.51419 4.95757 5.08394 5.10749 5.32969 5.45931 5.55296 5.72318 6.05947 6.08826 6.24090 6.40341 6.56997 6.76295 7.04225 7.39354 7.44103 7.54591 8.14178 8.61285 10.24740 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.007248 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.104985 B = 3862.230361 C = 4021.680074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.153 3.847 3 Si 0.815 3.185 4 H -0.245 1.245 5 H -0.256 1.256 6 H -0.231 1.231 7 C -1.010 5.010 8 H 0.123 0.877 9 S 2.668 3.332 10 O -1.000 7.000 11 O -1.001 7.001 12 N -1.064 6.064 13 C 0.161 3.839 14 C -0.112 4.112 15 C -0.113 4.113 16 C -0.090 4.090 17 C -0.184 4.184 18 C 0.386 3.614 19 O -0.465 6.465 20 C -0.079 4.079 21 H 0.282 0.718 22 H 0.416 0.584 23 H 0.162 0.838 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.104 0.896 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -9.635 5.983 12.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.067 4.067 3 Si 0.635 3.365 4 H -0.169 1.169 5 H -0.180 1.180 6 H -0.153 1.153 7 C -1.145 5.145 8 H 0.141 0.859 9 S 2.771 3.229 10 O -0.989 6.989 11 O -0.992 6.992 12 N -0.810 5.810 13 C 0.064 3.936 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.109 4.109 17 C -0.186 4.186 18 C 0.245 3.755 19 O -0.338 6.338 20 C -0.101 4.101 21 H 0.093 0.907 22 H 0.251 0.749 23 H 0.180 0.820 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.120 0.880 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.227 -8.856 5.507 12.146 hybrid contribution -0.301 0.442 -0.338 0.632 sum 5.926 -8.415 5.169 11.517 Atomic orbital electron populations 1.69983 1.06551 1.29184 1.38882 1.24423 0.94844 0.98774 0.88682 0.87666 0.82594 0.84367 0.81846 1.16861 1.17989 1.15337 1.30259 1.14651 1.02488 1.67135 0.85863 1.01758 0.77758 0.69771 0.73586 1.93408 1.85217 1.78677 1.41640 1.93426 1.85595 1.71289 1.48867 1.53498 1.67279 1.28661 1.31550 1.17325 0.97713 0.90252 0.88343 1.22265 0.97770 1.01915 0.91347 1.20985 0.99427 0.93205 0.99568 1.21291 0.98034 0.96966 0.94599 1.20696 1.06141 0.97540 0.94201 1.24047 0.72656 0.87646 0.91193 1.90516 1.41391 1.78699 1.23204 1.21430 0.95711 0.92787 1.00210 0.90721 0.74914 0.82031 0.84990 0.85222 0.88008 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.36 13.96 55.43 0.77 -22.59 15 2 C 0.15 4.33 5.47 -17.82 -0.10 4.24 15 3 Si 0.81 20.47 26.32 -169.99 -4.47 16.00 15 4 H -0.24 -6.05 7.11 56.52 0.40 -5.65 15 5 H -0.26 -5.87 7.11 56.52 0.40 -5.47 15 6 H -0.23 -5.81 5.89 56.52 0.33 -5.48 15 7 C -1.01 -27.90 10.15 30.60 0.31 -27.59 15 8 H 0.12 3.51 8.06 -52.49 -0.42 3.09 15 9 S 2.67 64.80 4.11 -107.50 -0.44 64.36 15 10 O -1.00 -25.08 13.72 -57.17 -0.78 -25.87 15 11 O -1.00 -26.03 16.36 -57.17 -0.94 -26.97 15 12 N -1.06 -20.38 5.76 32.38 0.19 -20.19 15 13 C 0.16 2.90 6.12 -83.84 -0.51 2.39 15 14 C -0.11 -1.93 9.22 -39.27 -0.36 -2.29 15 15 C -0.11 -1.53 10.02 -39.68 -0.40 -1.92 15 16 C -0.09 -1.05 9.79 -39.08 -0.38 -1.43 15 17 C -0.18 -2.51 5.87 -105.09 -0.62 -3.13 15 18 C 0.39 4.58 11.46 34.36 0.39 4.97 15 19 O -0.46 -7.36 17.16 5.59 0.10 -7.26 15 20 C -0.08 -1.30 9.52 -38.89 -0.37 -1.67 15 21 H 0.28 7.28 8.31 -40.82 -0.34 6.94 15 22 H 0.42 6.61 8.96 -34.47 -0.31 6.30 15 23 H 0.16 3.01 5.69 -52.48 -0.30 2.71 15 24 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 25 H 0.13 0.99 8.06 -52.49 -0.42 0.56 15 26 H 0.10 0.73 8.06 -52.49 -0.42 0.30 15 27 H 0.14 2.18 7.65 -52.48 -0.40 1.77 15 LS Contribution 257.95 15.07 3.89 3.89 Total: -1.00 -33.40 257.95 -5.63 -39.03 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -1.90 Total: 6.05 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.04 Total: -26.45 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.96 Total: -42.78 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -1.62 Total: -60.10 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.47 Total: 16.00 kcal Atomic # 16 Polarization: 64.80 SS G_CDS: -0.44 Total: 64.36 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.40 -5.63 -39.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236405987.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.803 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds