Wall clock time and date at job start Mon Mar 30 2020 04:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00044 * 2 1 4 4 H 1.48498 * 109.47299 * 270.00287 * 3 2 1 5 5 H 1.48506 * 109.46984 * 30.00098 * 3 2 1 6 6 H 1.48499 * 109.46958 * 149.99615 * 3 2 1 7 7 C 1.37872 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00227 * 0.02562 * 7 2 1 9 9 S 1.76196 * 120.00211 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.40117 * 71.67117 * 9 7 2 11 11 O 1.42099 * 106.40504 * 298.75191 * 9 7 2 12 12 N 1.65598 * 107.21961 * 185.20938 * 9 7 2 13 13 C 1.39708 * 120.00616 * 298.50719 * 12 9 7 14 14 C 1.39067 * 119.98946 * 313.78740 * 13 12 9 15 15 C 1.38245 * 120.28066 * 180.02562 * 14 13 12 16 16 C 1.37952 * 120.25577 * 359.97438 * 15 14 13 17 17 C 1.39850 * 119.97457 * 359.97438 * 16 15 14 18 18 C 1.47187 * 120.13819 * 180.02562 * 17 16 15 19 19 O 1.21248 * 120.00157 * 179.97438 * 18 17 16 20 20 C 1.38568 * 119.99632 * 133.80096 * 13 12 9 21 21 H 0.97008 * 120.00267 * 359.97438 * 1 2 3 22 22 H 0.97006 * 120.00104 * 118.50960 * 12 9 7 23 23 H 1.08004 * 119.86180 * 0.03664 * 14 13 12 24 24 H 1.07998 * 119.87679 * 179.97438 * 15 14 13 25 25 H 1.07999 * 120.01756 * 180.02562 * 16 15 14 26 26 H 1.08001 * 119.99828 * 359.97438 * 18 17 16 27 27 H 1.08003 * 120.12378 * 0.26304 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 16 3.7664 -1.1941 0.0001 10 8 4.1672 -0.7663 1.2946 11 8 4.1682 -0.5376 -1.1943 12 7 4.2567 -2.7692 -0.1443 13 6 3.9116 -3.7012 0.8375 14 6 4.0657 -3.3832 2.1826 15 6 3.7266 -4.3011 3.1592 16 6 3.2320 -5.5399 2.8071 17 6 3.0716 -5.8704 1.4577 18 6 2.5437 -7.1909 1.0781 19 8 2.4052 -7.4747 -0.0926 20 6 3.4160 -4.9423 0.4711 21 1 -0.4851 0.8401 0.0004 22 1 4.7836 -3.0448 -0.9108 23 1 4.4518 -2.4151 2.4655 24 1 3.8494 -4.0475 4.2017 25 1 2.9679 -6.2538 3.5732 26 1 2.2797 -7.9069 1.8422 27 1 3.2998 -5.1927 -0.5731 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236405987.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:24 Heat of formation + Delta-G solvation = -112.398464 kcal Electronic energy + Delta-G solvation = -16509.100236 eV Core-core repulsion = 13551.002321 eV Total energy + Delta-G solvation = -2958.097915 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.83874 -39.34488 -37.82345 -36.66247 -35.96271 -35.24217 -32.14159 -30.23098 -28.63846 -25.84402 -23.41631 -22.20086 -21.08722 -19.60767 -18.93440 -18.68482 -17.29167 -17.24364 -16.81119 -16.39196 -15.74333 -15.57931 -15.32600 -15.21410 -14.98408 -14.67089 -14.03545 -13.52914 -13.51011 -13.19465 -12.94852 -12.73040 -12.43311 -12.38540 -11.90262 -11.68553 -11.39923 -11.17252 -10.72893 -9.96517 -9.36379 -9.01100 -7.60029 -0.31425 -0.12878 0.46101 1.02867 1.11611 1.16923 1.55732 1.84620 2.29391 2.38004 2.85302 3.10165 3.40830 3.87041 3.95982 4.14503 4.25735 4.33186 4.44371 4.70969 4.96065 5.05121 5.29684 5.32207 5.41504 5.51505 5.87546 5.95430 6.15971 6.46346 6.54124 8.16956 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.007248 C = 0.006961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.104985 B = 3862.230361 C = 4021.680074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.109 3.891 3 Si 0.839 3.161 4 H -0.240 1.240 5 H -0.218 1.218 6 H -0.235 1.235 7 C -1.034 5.034 8 H 0.100 0.900 9 S 2.695 3.305 10 O -1.009 7.009 11 O -1.021 7.021 12 N -1.055 6.055 13 C 0.124 3.876 14 C -0.140 4.140 15 C -0.112 4.112 16 C -0.062 4.062 17 C -0.192 4.192 18 C 0.397 3.603 19 O -0.510 6.510 20 C -0.099 4.099 21 H 0.293 0.707 22 H 0.428 0.572 23 H 0.141 0.859 24 H 0.166 0.834 25 H 0.189 0.811 26 H 0.171 0.829 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 -11.102 8.072 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.109 4.109 3 Si 0.656 3.344 4 H -0.164 1.164 5 H -0.140 1.140 6 H -0.158 1.158 7 C -1.167 5.167 8 H 0.118 0.882 9 S 2.796 3.204 10 O -0.999 6.999 11 O -1.012 7.012 12 N -0.806 5.806 13 C 0.029 3.971 14 C -0.161 4.161 15 C -0.130 4.130 16 C -0.080 4.080 17 C -0.194 4.194 18 C 0.258 3.742 19 O -0.386 6.386 20 C -0.121 4.121 21 H 0.104 0.896 22 H 0.266 0.734 23 H 0.159 0.841 24 H 0.184 0.816 25 H 0.206 0.794 26 H 0.187 0.813 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.363 -10.315 7.606 14.309 hybrid contribution -0.352 0.707 -0.904 1.200 sum 6.011 -9.608 6.702 13.167 Atomic orbital electron populations 1.70009 1.07530 1.30700 1.39747 1.25185 0.95691 1.01486 0.88496 0.87287 0.82127 0.82419 0.82561 1.16377 1.13991 1.15762 1.30762 1.17313 1.01684 1.66953 0.88186 1.00806 0.75967 0.70735 0.72850 1.93393 1.84670 1.79886 1.41946 1.93388 1.85276 1.72918 1.49576 1.52925 1.67325 1.27539 1.32766 1.17577 1.00344 0.90795 0.88426 1.22324 0.99523 1.02344 0.91940 1.21446 0.98120 0.93087 1.00350 1.21887 0.94490 0.96847 0.94802 1.21229 1.05339 0.98153 0.94693 1.24881 0.70518 0.87229 0.91558 1.90525 1.43270 1.79206 1.25615 1.21527 0.96613 0.93106 1.00845 0.89605 0.73445 0.84114 0.81613 0.79386 0.81278 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.29 13.96 21.44 0.30 -48.99 15 2 C 0.11 6.25 5.47 84.65 0.46 6.71 15 3 Si 0.84 41.23 26.32 68.60 1.81 43.03 15 4 H -0.24 -11.56 7.11 99.48 0.71 -10.86 15 5 H -0.22 -9.32 7.11 99.48 0.71 -8.62 15 6 H -0.23 -11.65 5.89 99.48 0.59 -11.06 15 7 C -1.03 -58.91 10.15 67.73 0.69 -58.23 15 8 H 0.10 5.98 8.06 -2.91 -0.02 5.96 15 9 S 2.69 133.74 4.11 -56.49 -0.23 133.50 15 10 O -1.01 -51.39 13.72 -128.00 -1.76 -53.15 15 11 O -1.02 -53.83 16.36 -128.00 -2.09 -55.92 15 12 N -1.05 -41.76 5.76 -51.46 -0.30 -42.06 15 13 C 0.12 4.57 6.12 38.16 0.23 4.81 15 14 C -0.14 -4.80 9.22 22.47 0.21 -4.59 15 15 C -0.11 -2.68 10.02 22.20 0.22 -2.45 15 16 C -0.06 -1.15 9.79 22.59 0.22 -0.93 15 17 C -0.19 -4.73 5.87 -20.17 -0.12 -4.85 15 18 C 0.40 7.95 11.46 70.17 0.80 8.76 15 19 O -0.51 -15.39 17.16 -2.93 -0.05 -15.44 15 20 C -0.10 -3.24 9.52 22.72 0.22 -3.03 15 21 H 0.29 15.20 8.31 -92.70 -0.77 14.43 15 22 H 0.43 14.18 8.96 -96.74 -0.87 13.32 15 23 H 0.14 5.36 5.69 -2.91 -0.02 5.34 15 24 H 0.17 2.78 8.06 -2.91 -0.02 2.76 15 25 H 0.19 1.37 8.06 -2.91 -0.02 1.35 15 26 H 0.17 1.25 8.06 -2.91 -0.02 1.23 15 27 H 0.12 4.21 7.65 -2.91 -0.02 4.19 15 Total: -1.00 -75.64 257.95 0.84 -74.79 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.23 Total: 18.03 kcal Atomic # 6 Polarization: -56.74 SS G_CDS: 2.94 Total: -53.80 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: 0.00 Total: -91.04 kcal Atomic # 8 Polarization: -120.61 SS G_CDS: -3.90 Total: -124.51 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 1.81 Total: 43.03 kcal Atomic # 16 Polarization: 133.74 SS G_CDS: -0.23 Total: 133.50 kcal Total: -75.64 0.84 -74.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236405987.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.604 kcal (2) G-P(sol) polarization free energy of solvation -75.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds