Wall clock time and date at job start Mon Mar 30 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34229 * 116.99764 * 2 1 4 4 O 1.20824 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99843 * 180.27445 * 3 2 1 6 6 C 1.53005 * 109.47248 * 179.72621 * 5 3 2 7 7 H 1.08994 * 109.46772 * 55.00243 * 6 5 3 8 8 N 1.46896 * 109.46912 * 294.99966 * 6 5 3 9 9 C 1.50701 * 109.47036 * 175.00049 * 6 5 3 10 10 C 1.34537 * 122.32946 * 80.02711 * 9 6 5 11 11 S 1.75789 * 110.14578 * 179.97438 * 10 9 6 12 12 C 1.75896 * 91.12998 * 359.97438 * 11 10 9 13 13 C 1.39912 * 125.40658 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99638 * 173.37756 * 13 12 11 15 15 C 1.40061 * 120.00517 * 353.37848 * 13 12 11 16 16 N 1.30873 * 119.99780 * 6.50496 * 15 13 12 17 17 Si 1.86804 * 120.00363 * 186.50697 * 15 13 12 18 18 H 1.48493 * 109.47167 * 94.98556 * 17 15 13 19 19 H 1.48504 * 109.46988 * 214.98875 * 17 15 13 20 20 H 1.48503 * 109.46840 * 334.98209 * 17 15 13 21 21 C 1.36805 * 122.32756 * 259.73885 * 9 6 5 22 22 H 1.08996 * 109.47159 * 59.99838 * 1 2 3 23 23 H 1.08996 * 109.46650 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47033 * 299.99553 * 1 2 3 25 25 H 1.09006 * 109.47482 * 299.72801 * 5 3 2 26 26 H 1.09003 * 109.47071 * 59.72633 * 5 3 2 27 27 H 1.00904 * 110.99443 * 176.04338 * 8 6 5 28 28 H 1.00899 * 111.00241 * 300.00058 * 8 6 5 29 29 H 1.08003 * 124.92279 * 359.96322 * 10 9 6 30 30 H 0.97000 * 119.99891 * 179.97438 * 16 15 13 31 31 H 1.08003 * 122.90197 * 359.96241 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0063 6 6 4.0001 2.7422 -0.0118 7 1 3.5413 3.2598 0.8305 8 7 3.5726 3.3744 -1.2670 9 6 5.5003 2.8229 0.1058 10 6 6.3158 2.6343 -0.9476 11 16 7.9940 2.8011 -0.4516 12 6 7.5076 3.1290 1.2067 13 6 8.3786 3.3836 2.2716 14 1 7.9844 3.6797 3.2326 15 6 9.7615 3.2546 2.0916 16 7 10.2471 3.0211 0.8989 17 14 10.9130 3.4159 3.5537 18 1 11.2153 2.0672 4.0968 19 1 12.1742 4.0694 3.1208 20 1 10.2646 4.2393 4.6058 21 6 6.1276 3.0986 1.2899 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.9597 0.7831 0.8834 26 1 3.9524 0.7785 -0.8965 27 1 3.7903 4.3596 -1.2679 28 1 3.9848 2.9121 -2.0635 29 1 5.9869 2.4124 -1.9521 30 1 11.2050 2.9322 0.7742 31 1 5.5913 3.2757 2.2105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238364744.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:24 Heat of formation + Delta-G solvation = -81.610927 kcal Electronic energy + Delta-G solvation = -16204.901390 eV Core-core repulsion = 13383.971617 eV Total energy + Delta-G solvation = -2820.929773 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13691 -37.43762 -36.03953 -34.52158 -32.94752 -29.74159 -28.79383 -27.26829 -24.99973 -23.85706 -21.10235 -19.85139 -18.03027 -17.57963 -16.84167 -16.47944 -16.20467 -15.37792 -15.25736 -14.53510 -14.16403 -13.50856 -13.20958 -12.79060 -12.53963 -12.07974 -12.02273 -11.78562 -11.54320 -11.34695 -11.28464 -10.88612 -10.60369 -10.54086 -10.37194 -10.09380 -10.05755 -9.52403 -8.98224 -8.13003 -7.43356 -7.02933 -6.73255 -4.56185 2.55858 2.61624 2.91317 2.93067 2.97357 3.10543 3.62070 3.69480 4.00818 4.09802 4.96276 5.02614 5.15447 5.19802 5.23693 5.51802 5.55112 5.68266 6.10609 6.24656 6.34032 6.62606 6.67287 6.82982 7.20961 7.52137 7.60068 7.78929 7.95520 8.04264 8.13915 8.14923 8.50695 8.56027 9.82558 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.040040 B = 0.004663 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.125355 B = 6002.924298 C = 6324.441888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.460 3.540 4 O -0.487 6.487 5 C -0.095 4.095 6 C 0.165 3.835 7 H 0.082 0.918 8 N -0.831 5.831 9 C -0.073 4.073 10 C -0.408 4.408 11 S 0.126 5.874 12 C 0.039 3.961 13 C -0.393 4.393 14 H 0.093 0.907 15 C 0.053 3.947 16 N -0.785 5.785 17 Si 0.933 3.067 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.259 1.259 21 C -0.348 4.348 22 H 0.059 0.941 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.341 0.659 28 H 0.331 0.669 29 H 0.116 0.884 30 H 0.295 0.705 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 -4.185 -0.999 8.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.288 6.288 3 C 0.302 3.698 4 O -0.372 6.372 5 C -0.134 4.134 6 C 0.050 3.950 7 H 0.100 0.900 8 N -0.358 5.358 9 C -0.086 4.086 10 C -0.544 4.544 11 S 0.387 5.613 12 C -0.081 4.081 13 C -0.429 4.429 14 H 0.111 0.889 15 C -0.168 4.168 16 N -0.413 5.413 17 Si 0.757 3.243 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.182 1.182 21 C -0.373 4.373 22 H 0.078 0.922 23 H 0.113 0.887 24 H 0.077 0.923 25 H 0.125 0.875 26 H 0.119 0.881 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.134 0.866 30 H 0.108 0.892 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.351 -4.230 -1.705 7.819 hybrid contribution 0.023 0.334 1.151 1.199 sum -6.328 -3.896 -0.554 7.452 Atomic orbital electron populations 1.23142 0.77361 1.02985 1.02236 1.86537 1.22725 1.34590 1.84908 1.23963 0.92348 0.80950 0.72543 1.90652 1.66820 1.35995 1.43758 1.21485 0.86374 0.99862 1.05662 1.19800 0.90418 0.91344 0.93390 0.89976 1.59135 1.65585 1.07573 1.03552 1.18757 0.94095 1.01882 0.93906 1.25118 1.00606 1.28078 1.00562 1.84476 1.01411 1.72181 1.03265 1.21814 0.94876 0.95979 0.95472 1.19165 0.90096 1.36115 0.97497 0.88929 1.26183 0.99658 0.93091 0.97826 1.68904 1.16181 1.33598 1.22572 0.85844 0.78597 0.79578 0.80321 1.19098 1.19820 1.18229 1.19559 0.92533 1.27745 0.97423 0.92213 0.88698 0.92279 0.87485 0.88146 0.84651 0.85687 0.86631 0.89222 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.35 10.57 -39.26 -0.41 -5.77 16 3 C 0.46 7.58 7.82 36.00 0.28 7.86 16 4 O -0.49 -9.19 15.10 -18.75 -0.28 -9.47 16 5 C -0.10 -1.57 5.44 -27.88 -0.15 -1.72 16 6 C 0.16 3.08 2.62 -68.86 -0.18 2.90 16 7 H 0.08 1.64 7.89 -51.93 -0.41 1.23 16 8 N -0.83 -14.38 8.23 -5.66 -0.05 -14.43 16 9 C -0.07 -1.60 4.83 -106.45 -0.51 -2.12 16 10 C -0.41 -9.12 10.42 29.42 0.31 -8.81 16 11 S 0.13 3.08 20.30 -107.50 -2.18 0.90 16 12 C 0.04 1.02 6.18 -38.94 -0.24 0.77 16 13 C -0.39 -9.97 9.28 -38.27 -0.36 -10.33 16 14 H 0.09 2.24 7.86 -52.48 -0.41 1.83 16 15 C 0.05 1.24 5.49 -17.28 -0.09 1.14 16 16 N -0.79 -18.94 10.70 55.56 0.59 -18.35 16 17 Si 0.93 17.56 29.57 -169.99 -5.03 12.54 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 20 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 21 C -0.35 -8.54 9.94 -40.08 -0.40 -8.94 16 22 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 23 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 26 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.34 5.82 9.06 -39.29 -0.36 5.46 16 28 H 0.33 5.41 7.71 -39.29 -0.30 5.10 16 29 H 0.12 2.35 7.16 -52.48 -0.38 1.98 16 30 H 0.30 6.41 8.30 -40.82 -0.34 6.07 16 31 H 0.10 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 285.09 15.07 4.30 4.30 Total: -1.00 -27.97 285.09 -6.87 -34.84 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -3.53 Total: 13.21 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -0.28 Total: -17.77 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.55 Total: -32.77 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.70 Total: -15.24 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.18 Total: 0.90 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.97 -6.87 -34.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238364744.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.772 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds