Wall clock time and date at job start Mon Mar 30 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34229 * 116.99764 * 2 1 4 4 O 1.20824 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99843 * 180.27445 * 3 2 1 6 6 C 1.53005 * 109.47248 * 179.72621 * 5 3 2 7 7 H 1.08994 * 109.46772 * 55.00243 * 6 5 3 8 8 N 1.46896 * 109.46912 * 294.99966 * 6 5 3 9 9 C 1.50701 * 109.47036 * 175.00049 * 6 5 3 10 10 C 1.34537 * 122.32946 * 80.02711 * 9 6 5 11 11 S 1.75789 * 110.14578 * 179.97438 * 10 9 6 12 12 C 1.75896 * 91.12998 * 359.97438 * 11 10 9 13 13 C 1.39912 * 125.40658 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99638 * 173.37756 * 13 12 11 15 15 C 1.40061 * 120.00517 * 353.37848 * 13 12 11 16 16 N 1.30873 * 119.99780 * 6.50496 * 15 13 12 17 17 Si 1.86804 * 120.00363 * 186.50697 * 15 13 12 18 18 H 1.48493 * 109.47167 * 94.98556 * 17 15 13 19 19 H 1.48504 * 109.46988 * 214.98875 * 17 15 13 20 20 H 1.48503 * 109.46840 * 334.98209 * 17 15 13 21 21 C 1.36805 * 122.32756 * 259.73885 * 9 6 5 22 22 H 1.08996 * 109.47159 * 59.99838 * 1 2 3 23 23 H 1.08996 * 109.46650 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47033 * 299.99553 * 1 2 3 25 25 H 1.09006 * 109.47482 * 299.72801 * 5 3 2 26 26 H 1.09003 * 109.47071 * 59.72633 * 5 3 2 27 27 H 1.00904 * 110.99443 * 176.04338 * 8 6 5 28 28 H 1.00899 * 111.00241 * 300.00058 * 8 6 5 29 29 H 1.08003 * 124.92279 * 359.96322 * 10 9 6 30 30 H 0.97000 * 119.99891 * 179.97438 * 16 15 13 31 31 H 1.08003 * 122.90197 * 359.96241 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0063 6 6 4.0001 2.7422 -0.0118 7 1 3.5413 3.2598 0.8305 8 7 3.5726 3.3744 -1.2670 9 6 5.5003 2.8229 0.1058 10 6 6.3158 2.6343 -0.9476 11 16 7.9940 2.8011 -0.4516 12 6 7.5076 3.1290 1.2067 13 6 8.3786 3.3836 2.2716 14 1 7.9844 3.6797 3.2326 15 6 9.7615 3.2546 2.0916 16 7 10.2471 3.0211 0.8989 17 14 10.9130 3.4159 3.5537 18 1 11.2153 2.0672 4.0968 19 1 12.1742 4.0694 3.1208 20 1 10.2646 4.2393 4.6058 21 6 6.1276 3.0986 1.2899 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.9597 0.7831 0.8834 26 1 3.9524 0.7785 -0.8965 27 1 3.7903 4.3596 -1.2679 28 1 3.9848 2.9121 -2.0635 29 1 5.9869 2.4124 -1.9521 30 1 11.2050 2.9322 0.7742 31 1 5.5913 3.2757 2.2105 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238364744.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:24 Heat of formation + Delta-G solvation = -98.915186 kcal Electronic energy + Delta-G solvation = -16205.651759 eV Core-core repulsion = 13383.971617 eV Total energy + Delta-G solvation = -2821.680142 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40280 -39.03580 -37.36500 -36.26695 -34.62255 -31.05745 -30.60163 -28.29728 -26.84534 -25.40183 -22.62847 -21.32935 -19.79350 -19.26304 -18.25861 -17.80272 -17.42623 -17.08780 -16.72238 -16.15341 -15.63544 -14.91002 -14.51218 -14.12163 -14.08232 -13.84987 -13.54596 -13.16342 -12.98843 -12.89007 -12.80490 -12.54841 -12.10510 -11.96823 -11.87365 -11.70068 -11.42195 -11.21841 -10.86971 -9.64794 -9.28716 -8.80623 -8.62345 -6.46528 0.79779 1.33030 1.37235 1.47953 1.53359 1.70975 1.82973 2.08674 2.26794 2.28443 3.09815 3.66039 3.96421 4.10500 4.29324 4.36060 4.38045 4.58955 4.74369 4.80627 4.84280 4.88579 5.01812 5.33074 5.46070 5.65408 5.89665 6.12698 6.17570 6.37019 6.60423 6.65223 6.69249 6.89299 8.07284 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.040040 B = 0.004663 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.125355 B = 6002.924298 C = 6324.441888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.371 6.371 3 C 0.468 3.532 4 O -0.515 6.515 5 C -0.093 4.093 6 C 0.173 3.827 7 H 0.067 0.933 8 N -0.825 5.825 9 C -0.067 4.067 10 C -0.402 4.402 11 S 0.100 5.900 12 C 0.008 3.992 13 C -0.427 4.427 14 H 0.092 0.908 15 C 0.016 3.984 16 N -0.808 5.808 17 Si 1.006 2.994 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.257 1.257 21 C -0.371 4.371 22 H 0.060 0.940 23 H 0.131 0.869 24 H 0.059 0.941 25 H 0.111 0.889 26 H 0.114 0.886 27 H 0.343 0.657 28 H 0.339 0.661 29 H 0.139 0.861 30 H 0.305 0.695 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 -4.973 -0.976 8.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.311 3.689 4 O -0.403 6.403 5 C -0.131 4.131 6 C 0.059 3.941 7 H 0.086 0.914 8 N -0.353 5.353 9 C -0.080 4.080 10 C -0.538 4.538 11 S 0.361 5.639 12 C -0.112 4.112 13 C -0.462 4.462 14 H 0.110 0.890 15 C -0.201 4.201 16 N -0.435 5.435 17 Si 0.825 3.175 18 H -0.184 1.184 19 H -0.186 1.186 20 H -0.180 1.180 21 C -0.397 4.397 22 H 0.078 0.922 23 H 0.149 0.851 24 H 0.077 0.923 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.118 0.882 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.503 -5.038 -1.709 8.402 hybrid contribution -0.012 0.549 1.094 1.224 sum -6.515 -4.489 -0.615 7.936 Atomic orbital electron populations 1.23490 0.75136 1.05446 1.02309 1.86510 1.24842 1.33179 1.84303 1.23783 0.92163 0.81144 0.71824 1.90645 1.67374 1.36989 1.45261 1.21376 0.86951 0.98200 1.06553 1.19647 0.87956 0.92927 0.93599 0.91434 1.59126 1.65276 1.07722 1.03185 1.18968 0.95953 1.00319 0.92761 1.25301 0.99311 1.27509 1.01634 1.84376 1.03442 1.73074 1.03054 1.22206 0.95783 0.96815 0.96382 1.19478 0.91510 1.37652 0.97584 0.88974 1.27107 1.00434 0.91876 1.00725 1.68956 1.17220 1.33027 1.24269 0.84778 0.76414 0.79776 0.76482 1.18385 1.18573 1.18025 1.19775 0.92455 1.29017 0.98413 0.92168 0.85093 0.92254 0.87064 0.86806 0.84500 0.84794 0.84316 0.88176 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.37 -9.97 10.57 -51.41 -0.54 -10.51 16 3 C 0.47 14.74 7.82 71.23 0.56 15.30 16 4 O -0.52 -18.89 15.10 21.97 0.33 -18.56 16 5 C -0.09 -2.92 5.44 29.85 0.16 -2.76 16 6 C 0.17 6.36 2.62 44.17 0.12 6.47 16 7 H 0.07 2.69 7.89 -2.39 -0.02 2.67 16 8 N -0.83 -27.47 8.23 -171.81 -1.41 -28.88 16 9 C -0.07 -2.92 4.83 -21.05 -0.10 -3.02 16 10 C -0.40 -17.67 10.42 66.97 0.70 -16.98 16 11 S 0.10 4.96 20.30 -56.49 -1.15 3.81 16 12 C 0.01 0.44 6.18 22.69 0.14 0.58 16 13 C -0.43 -22.08 9.28 23.12 0.21 -21.87 16 14 H 0.09 4.58 7.86 -2.91 -0.02 4.56 16 15 C 0.02 0.77 5.49 85.28 0.47 1.23 16 16 N -0.81 -38.92 10.70 21.86 0.23 -38.69 16 17 Si 1.01 35.28 29.57 68.60 2.03 37.31 16 18 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 19 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 20 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 21 C -0.37 -18.59 9.94 21.94 0.22 -18.37 16 22 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 23 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 25 H 0.11 3.42 8.14 -2.38 -0.02 3.41 16 26 H 0.11 3.29 8.14 -2.39 -0.02 3.28 16 27 H 0.34 11.32 9.06 -89.69 -0.81 10.51 16 28 H 0.34 10.39 7.71 -89.69 -0.69 9.70 16 29 H 0.14 5.37 7.16 -2.91 -0.02 5.35 16 30 H 0.31 13.09 8.30 -92.71 -0.77 12.32 16 31 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -59.78 285.09 2.82 -56.95 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.34 Total: 36.21 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 3.67 Total: -37.65 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: -1.18 Total: -67.57 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.21 Total: -29.07 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.15 Total: 3.81 kcal Total: -59.78 2.82 -56.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238364744.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.960 kcal (2) G-P(sol) polarization free energy of solvation -59.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds