Wall clock time and date at job start Mon Mar 30 2020 05:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 110.54275 * 2 1 4 4 O 1.42093 * 110.54935 * 223.24568 * 2 1 3 5 5 C 1.76208 * 104.44772 * 111.62134 * 2 1 3 6 6 C 1.38251 * 119.99674 * 90.00599 * 5 2 1 7 7 C 1.38223 * 119.99605 * 180.02562 * 6 5 2 8 8 C 1.38251 * 120.00156 * 359.97438 * 7 6 5 9 9 C 1.38216 * 120.00055 * 359.96475 * 8 7 6 10 10 C 1.50693 * 119.99851 * 180.02562 * 9 8 7 11 11 H 1.09010 * 109.46918 * 199.99533 * 10 9 8 12 12 N 1.46898 * 109.47183 * 319.99295 * 10 9 8 13 13 C 1.50696 * 109.47459 * 79.99768 * 10 9 8 14 14 H 1.07995 * 120.00332 * 359.97438 * 13 10 9 15 15 C 1.37880 * 119.99983 * 180.02562 * 13 10 9 16 16 N 1.31517 * 120.00210 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00019 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.46845 * 269.99914 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99403 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00010 * 17 15 13 21 21 C 1.38213 * 119.99862 * 270.21165 * 5 2 1 22 22 H 1.08996 * 109.47342 * 308.37460 * 1 2 3 23 23 H 1.09002 * 109.46846 * 68.38139 * 1 2 3 24 24 H 1.09007 * 109.46983 * 188.37587 * 1 2 3 25 25 H 1.07996 * 120.00651 * 359.97438 * 6 5 2 26 26 H 1.08000 * 119.99892 * 179.97438 * 7 6 5 27 27 H 1.07999 * 120.00348 * 179.97438 * 8 7 6 28 28 H 1.00899 * 111.00188 * 296.04594 * 12 10 9 29 29 H 1.00896 * 111.00080 * 60.00784 * 12 10 9 30 30 H 0.97000 * 119.99462 * 359.97438 * 16 15 13 31 31 H 1.08004 * 120.00591 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3128 -0.9692 -0.9116 5 6 2.2536 -0.6287 1.5863 6 6 2.4262 -1.9884 1.7673 7 6 2.7705 -2.4817 3.0118 8 6 2.9429 -1.6153 4.0753 9 6 2.7716 -0.2558 3.8940 10 6 2.9600 0.6885 5.0531 11 1 2.4571 1.6317 4.8388 12 7 2.3873 0.0932 6.2678 13 6 4.4311 0.9399 5.2623 14 1 5.1570 0.4632 4.6204 15 6 4.8502 1.7777 6.2739 16 7 3.9663 2.3579 7.0560 17 14 6.6737 2.0888 6.5337 18 1 7.2178 1.0816 7.4798 19 1 7.3843 1.9816 5.2341 20 1 6.8688 3.4502 7.0939 21 6 2.4217 0.2370 2.6505 22 1 -0.3634 0.6379 0.8056 23 1 -0.3633 0.3786 -0.9554 24 1 -0.3633 -1.0168 0.1497 25 1 2.2912 -2.6653 0.9367 26 1 2.9049 -3.5439 3.1533 27 1 3.2115 -2.0007 5.0478 28 1 1.3895 -0.0255 6.1765 29 1 2.8371 -0.7827 6.4879 30 1 3.0194 2.1967 6.9208 31 1 2.2833 1.2989 2.5099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238387041.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:51 Heat of formation + Delta-G solvation = -45.449880 kcal Electronic energy + Delta-G solvation = -16696.375697 eV Core-core repulsion = 13877.013985 eV Total energy + Delta-G solvation = -2819.361712 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10149 -37.04162 -35.88645 -35.04461 -31.68743 -30.96729 -29.73963 -29.46097 -25.72634 -23.27095 -22.54927 -20.85203 -18.71171 -17.53686 -16.68738 -16.21616 -15.92468 -15.75130 -14.98557 -14.40447 -14.07720 -13.67450 -13.46252 -13.41387 -13.31656 -12.77719 -12.19830 -12.08392 -12.03311 -11.91901 -11.65544 -11.16549 -11.08469 -10.75480 -10.36532 -10.30367 -10.07137 -9.17171 -8.94779 -8.40075 -8.13903 -7.62762 -6.24735 -4.08767 0.09030 1.15330 1.67851 2.92785 3.45688 3.49759 3.65135 3.70587 4.08852 4.12734 4.57293 4.62776 4.80506 5.09791 5.17697 5.37047 5.43894 5.46409 5.63028 5.77544 5.96044 6.02642 6.29169 6.37134 6.60804 6.68185 7.16654 7.21793 7.87157 8.17994 8.56045 8.64183 8.98237 9.74746 11.15443 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.006034 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.746849 B = 4639.585054 C = 4899.082290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.501 3.499 3 O -0.937 6.937 4 O -0.946 6.946 5 C -0.658 4.658 6 C -0.052 4.052 7 C -0.141 4.141 8 C -0.067 4.067 9 C -0.085 4.085 10 C 0.236 3.764 11 H 0.042 0.958 12 N -0.829 5.829 13 C -0.612 4.612 14 H 0.048 0.952 15 C 0.040 3.960 16 N -0.888 5.888 17 Si 1.066 2.934 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.284 1.284 21 C -0.027 4.027 22 H 0.132 0.868 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.123 0.877 27 H 0.125 0.875 28 H 0.302 0.698 29 H 0.326 0.674 30 H 0.290 0.710 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 -7.906 -10.728 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.682 3.318 3 O -0.934 6.934 4 O -0.943 6.943 5 C -0.746 4.746 6 C -0.071 4.071 7 C -0.160 4.160 8 C -0.086 4.086 9 C -0.089 4.089 10 C 0.127 3.873 11 H 0.060 0.940 12 N -0.356 5.356 13 C -0.650 4.650 14 H 0.066 0.934 15 C -0.170 4.170 16 N -0.522 5.522 17 Si 0.895 3.105 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.046 4.046 22 H 0.150 0.850 23 H 0.146 0.854 24 H 0.148 0.852 25 H 0.150 0.850 26 H 0.141 0.859 27 H 0.143 0.857 28 H 0.113 0.887 29 H 0.139 0.861 30 H 0.102 0.898 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.810 -6.142 -10.042 13.599 hybrid contribution -1.735 -2.079 -0.856 2.841 sum -8.545 -8.221 -10.899 16.105 Atomic orbital electron populations 1.30240 1.26496 1.11833 1.11550 1.05009 0.77590 0.74643 0.74596 1.93598 1.76998 1.36579 1.86228 1.93551 1.77288 1.61834 1.61603 1.30271 1.20056 1.03043 1.21205 1.20693 0.95933 0.92984 0.97481 1.21187 1.01980 0.99666 0.93213 1.21323 0.94822 0.93481 0.98944 1.21700 0.93785 0.95648 0.97722 1.18432 0.97146 0.90456 0.81315 0.94005 1.59445 1.05181 1.31599 1.39417 1.21695 0.89258 1.33839 1.20229 0.93407 1.25648 1.06119 0.92736 0.92516 1.70541 1.04984 1.39963 1.36720 0.83604 0.74529 0.76655 0.75703 1.21570 1.21613 1.20985 1.20900 0.93390 0.99082 0.91273 0.84961 0.85363 0.85209 0.85027 0.85867 0.85739 0.88697 0.86054 0.89768 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -5.00 10.80 101.05 1.09 -3.91 16 2 S 2.50 31.90 5.80 -107.50 -0.62 31.27 16 3 O -0.94 -15.57 17.13 -57.54 -0.99 -16.56 16 4 O -0.95 -14.24 17.13 -57.54 -0.99 -15.22 16 5 C -0.66 -10.17 5.66 -39.59 -0.22 -10.39 16 6 C -0.05 -0.75 9.47 -39.58 -0.37 -1.13 16 7 C -0.14 -2.12 10.05 -39.58 -0.40 -2.52 16 8 C -0.07 -1.18 9.29 -39.58 -0.37 -1.55 16 9 C -0.09 -1.71 4.88 -104.62 -0.51 -2.22 16 10 C 0.24 5.56 2.47 -70.02 -0.17 5.39 16 11 H 0.04 1.07 7.87 -51.92 -0.41 0.66 16 12 N -0.83 -17.89 7.62 -6.65 -0.05 -17.94 16 13 C -0.61 -16.76 8.70 -34.44 -0.30 -17.06 16 14 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 15 C 0.04 1.13 5.39 -17.82 -0.10 1.03 16 16 N -0.89 -26.34 13.50 55.43 0.75 -25.59 16 17 Si 1.07 25.27 29.90 -169.99 -5.08 20.19 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.03 -0.49 9.09 -39.58 -0.36 -0.85 16 22 H 0.13 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 24 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 25 H 0.13 1.57 7.57 -52.49 -0.40 1.17 16 26 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.12 2.09 6.66 -52.49 -0.35 1.74 16 28 H 0.30 5.64 9.06 -39.29 -0.36 5.28 16 29 H 0.33 6.71 7.34 -39.29 -0.29 6.42 16 30 H 0.29 8.52 6.39 -40.82 -0.26 8.26 16 31 H 0.14 2.45 7.55 -52.48 -0.40 2.06 16 LS Contribution 280.88 15.07 4.23 4.23 Total: -1.00 -35.11 280.88 -7.81 -42.92 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.35 Total: 9.91 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: -1.71 Total: -33.22 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.70 Total: -43.53 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.97 Total: -31.78 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.08 Total: 20.19 kcal Atomic # 16 Polarization: 31.90 SS G_CDS: -0.62 Total: 31.27 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -35.11 -7.81 -42.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238387041.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.525 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds