Wall clock time and date at job start Mon Mar 30 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42106 * 110.54553 * 2 1 4 4 O 1.42101 * 110.54514 * 223.24802 * 2 1 3 5 5 C 1.76200 * 104.44993 * 111.62499 * 2 1 3 6 6 C 1.38261 * 120.00050 * 111.22123 * 5 2 1 7 7 C 1.38209 * 119.99835 * 179.97438 * 6 5 2 8 8 C 1.38254 * 120.00139 * 0.02903 * 7 6 5 9 9 C 1.38211 * 120.00307 * 359.97254 * 8 7 6 10 10 C 1.38219 * 119.99868 * 291.24395 * 5 2 1 11 11 C 1.50700 * 120.00079 * 0.27998 * 10 5 2 12 12 H 1.08995 * 109.46729 * 31.52107 * 11 10 5 13 13 N 1.46899 * 109.46846 * 151.51929 * 11 10 5 14 14 C 1.50701 * 109.46982 * 271.51901 * 11 10 5 15 15 H 1.07999 * 119.99714 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99952 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99995 * 0.02562 * 16 14 11 19 19 H 1.48497 * 109.47161 * 90.00023 * 18 16 14 20 20 H 1.48503 * 109.47035 * 209.99924 * 18 16 14 21 21 H 1.48498 * 109.47120 * 330.00210 * 18 16 14 22 22 H 1.09001 * 109.47459 * 314.49867 * 1 2 3 23 23 H 1.09002 * 109.47196 * 74.49459 * 1 2 3 24 24 H 1.09002 * 109.47653 * 194.49703 * 1 2 3 25 25 H 1.07994 * 119.99957 * 0.06812 * 6 5 2 26 26 H 1.07996 * 119.99793 * 180.02562 * 7 6 5 27 27 H 1.08006 * 120.00259 * 179.97438 * 8 7 6 28 28 H 1.08000 * 120.00260 * 180.02562 * 9 8 7 29 29 H 1.00904 * 110.99840 * 60.00177 * 13 11 10 30 30 H 1.00907 * 110.99723 * 183.94986 * 13 11 10 31 31 H 0.97000 * 119.99659 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.8458 -1.8733 1.6966 7 6 3.1911 -2.3662 2.9408 8 6 2.9439 -1.6152 4.0749 9 6 2.3519 -0.3712 3.9646 10 6 2.0060 0.1218 2.7200 11 6 1.3543 1.4753 2.6002 12 1 0.6758 1.4776 1.7472 13 7 0.5999 1.7658 3.8268 14 6 2.4147 2.5276 2.4016 15 1 3.4563 2.2444 2.3652 16 6 2.0550 3.8516 2.2651 17 7 2.9803 4.7697 2.0912 18 14 0.2534 4.3412 2.3273 19 1 -0.1305 4.6392 3.7304 20 1 0.0391 5.5478 1.4885 21 1 -0.5808 3.2257 1.8122 22 1 -0.3634 0.7203 0.7330 23 1 -0.3634 0.2747 -0.9903 24 1 -0.3634 -0.9949 0.2573 25 1 3.0399 -2.4595 0.8106 26 1 3.6541 -3.3381 3.0270 27 1 3.2134 -2.0006 5.0472 28 1 2.1591 0.2156 4.8505 29 1 1.2073 1.7693 4.6326 30 1 0.1011 2.6392 3.7462 31 1 2.7273 5.7013 1.9956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238387807.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:56 Heat of formation + Delta-G solvation = -19.972227 kcal Electronic energy + Delta-G solvation = -17619.033450 eV Core-core repulsion = 14800.776532 eV Total energy + Delta-G solvation = -2818.256918 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.04145 -36.59926 -35.26582 -34.97733 -31.90826 -30.97613 -29.83718 -29.16849 -26.21738 -23.25251 -22.68665 -20.23189 -18.50487 -17.32715 -16.97970 -15.94879 -15.67952 -15.32695 -14.89370 -14.37671 -14.07037 -13.94629 -13.22449 -13.01267 -12.88038 -12.57699 -12.37013 -12.06515 -11.58553 -11.40970 -11.29210 -11.20746 -10.83016 -10.64934 -10.47213 -10.35706 -9.90258 -9.47290 -8.90703 -8.68366 -8.38453 -7.67745 -6.13071 -4.12050 0.61939 1.35129 1.81814 3.11178 3.19930 3.27713 3.41816 3.94244 4.26386 4.39345 4.72026 5.04597 5.11358 5.13667 5.25993 5.31747 5.46382 5.52872 5.81237 5.90633 5.99114 6.18123 6.28213 6.50260 6.57330 6.77559 6.96796 7.27014 7.40750 7.91030 8.12468 8.43457 8.95568 9.43822 11.00988 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.011090 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.297811 B = 2524.182596 C = 3158.096250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.664 4.664 2 S 2.481 3.519 3 O -0.878 6.878 4 O -0.961 6.961 5 C -0.659 4.659 6 C -0.028 4.028 7 C -0.165 4.165 8 C -0.072 4.072 9 C -0.131 4.131 10 C 0.072 3.928 11 C 0.183 3.817 12 H 0.047 0.953 13 N -0.849 5.849 14 C -0.509 4.509 15 H 0.081 0.919 16 C 0.081 3.919 17 N -0.884 5.884 18 Si 0.862 3.138 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.263 1.263 22 H 0.137 0.863 23 H 0.125 0.875 24 H 0.125 0.875 25 H 0.136 0.864 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.335 0.665 30 H 0.323 0.677 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.288 -11.308 0.908 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.813 4.813 2 S 2.660 3.340 3 O -0.874 6.874 4 O -0.958 6.958 5 C -0.746 4.746 6 C -0.047 4.047 7 C -0.184 4.184 8 C -0.090 4.090 9 C -0.150 4.150 10 C 0.071 3.929 11 C 0.074 3.926 12 H 0.065 0.935 13 N -0.384 5.384 14 C -0.549 4.549 15 H 0.099 0.901 16 C -0.123 4.123 17 N -0.522 5.522 18 Si 0.691 3.309 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.188 1.188 22 H 0.155 0.845 23 H 0.144 0.856 24 H 0.143 0.857 25 H 0.154 0.846 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.139 0.861 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.116 -11.523 0.049 12.607 hybrid contribution -0.747 0.965 0.824 1.472 sum -5.862 -10.558 0.873 12.108 Atomic orbital electron populations 1.30433 1.27708 1.11639 1.11482 1.05887 0.77753 0.75774 0.74586 1.93881 1.75181 1.33546 1.84839 1.93490 1.77592 1.63197 1.61565 1.30259 1.17861 1.05683 1.20821 1.20833 0.92856 0.92733 0.98316 1.21061 1.04007 1.00568 0.92768 1.21356 0.95062 0.94266 0.98304 1.21055 1.00218 0.95878 0.97885 1.19763 0.88721 0.92892 0.91558 1.18928 0.93213 0.89928 0.90482 0.93532 1.59801 1.33285 1.38977 1.06341 1.21150 0.94263 0.89697 1.49764 0.90086 1.24860 0.96569 0.96509 0.94325 1.69852 1.32559 1.01247 1.48536 0.87221 0.86684 0.78918 0.78125 1.20239 1.21386 1.18790 0.84472 0.85606 0.85658 0.84593 0.86059 0.86122 0.85230 0.85143 0.86096 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -9.24 10.47 101.05 1.06 -8.18 16 2 S 2.48 45.23 5.15 -107.50 -0.55 44.68 16 3 O -0.88 -20.48 14.52 -57.54 -0.84 -21.32 16 4 O -0.96 -18.20 16.75 -57.54 -0.96 -19.17 16 5 C -0.66 -12.34 5.60 -39.58 -0.22 -12.57 16 6 C -0.03 -0.47 9.50 -39.58 -0.38 -0.84 16 7 C -0.17 -2.41 10.05 -39.59 -0.40 -2.81 16 8 C -0.07 -1.07 10.05 -39.59 -0.40 -1.47 16 9 C -0.13 -2.32 9.28 -39.58 -0.37 -2.69 16 10 C 0.07 1.45 4.96 -104.62 -0.52 0.94 16 11 C 0.18 4.12 1.74 -70.02 -0.12 4.00 16 12 H 0.05 1.03 3.01 -51.93 -0.16 0.87 16 13 N -0.85 -17.32 8.81 -6.65 -0.06 -17.38 16 14 C -0.51 -13.88 7.21 -34.44 -0.25 -14.13 16 15 H 0.08 2.49 7.98 -52.49 -0.42 2.07 16 16 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 17 N -0.88 -26.75 13.96 55.43 0.77 -25.98 16 18 Si 0.86 20.41 24.61 -169.99 -4.18 16.23 16 19 H -0.28 -6.15 7.01 56.52 0.40 -5.76 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 22 H 0.14 2.06 5.83 -51.92 -0.30 1.76 16 23 H 0.13 1.42 8.14 -51.92 -0.42 1.00 16 24 H 0.12 1.39 8.14 -51.92 -0.42 0.97 16 25 H 0.14 2.00 7.23 -52.49 -0.38 1.62 16 26 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.13 2.12 6.34 -52.49 -0.33 1.79 16 29 H 0.34 6.37 7.18 -39.29 -0.28 6.09 16 30 H 0.32 6.75 4.30 -39.29 -0.17 6.58 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 261.38 15.07 3.94 3.94 Total: -1.00 -33.96 261.38 -6.48 -40.44 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -2.90 Total: 14.12 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: -1.69 Total: -35.57 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.71 Total: -43.36 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.80 Total: -40.48 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.18 Total: 16.23 kcal Atomic # 16 Polarization: 45.23 SS G_CDS: -0.55 Total: 44.68 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.96 -6.48 -40.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238387807.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.467 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds