Wall clock time and date at job start Mon Mar 30 2020 05:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 O 1.42106 * 110.54553 * 2 1 4 4 O 1.42101 * 110.54514 * 223.24802 * 2 1 3 5 5 C 1.76200 * 104.44993 * 111.62499 * 2 1 3 6 6 C 1.38261 * 120.00050 * 111.22123 * 5 2 1 7 7 C 1.38209 * 119.99835 * 179.97438 * 6 5 2 8 8 C 1.38254 * 120.00139 * 0.02903 * 7 6 5 9 9 C 1.38211 * 120.00307 * 359.97254 * 8 7 6 10 10 C 1.38219 * 119.99868 * 291.24395 * 5 2 1 11 11 C 1.50700 * 120.00079 * 0.27998 * 10 5 2 12 12 H 1.08995 * 109.46729 * 31.52107 * 11 10 5 13 13 N 1.46899 * 109.46846 * 151.51929 * 11 10 5 14 14 C 1.50701 * 109.46982 * 271.51901 * 11 10 5 15 15 H 1.07999 * 119.99714 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99955 * 179.97438 * 14 11 10 17 17 N 1.31510 * 119.99952 * 180.02562 * 16 14 11 18 18 Si 1.86804 * 119.99995 * 0.02562 * 16 14 11 19 19 H 1.48497 * 109.47161 * 90.00023 * 18 16 14 20 20 H 1.48503 * 109.47035 * 209.99924 * 18 16 14 21 21 H 1.48498 * 109.47120 * 330.00210 * 18 16 14 22 22 H 1.09001 * 109.47459 * 314.49867 * 1 2 3 23 23 H 1.09002 * 109.47196 * 74.49459 * 1 2 3 24 24 H 1.09002 * 109.47653 * 194.49703 * 1 2 3 25 25 H 1.07994 * 119.99957 * 0.06812 * 6 5 2 26 26 H 1.07996 * 119.99793 * 180.02562 * 7 6 5 27 27 H 1.08006 * 120.00259 * 179.97438 * 8 7 6 28 28 H 1.08000 * 120.00260 * 180.02562 * 9 8 7 29 29 H 1.00904 * 110.99840 * 60.00177 * 13 11 10 30 30 H 1.00907 * 110.99723 * 183.94986 * 13 11 10 31 31 H 0.97000 * 119.99659 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.8458 -1.8733 1.6966 7 6 3.1911 -2.3662 2.9408 8 6 2.9439 -1.6152 4.0749 9 6 2.3519 -0.3712 3.9646 10 6 2.0060 0.1218 2.7200 11 6 1.3543 1.4753 2.6002 12 1 0.6758 1.4776 1.7472 13 7 0.5999 1.7658 3.8268 14 6 2.4147 2.5276 2.4016 15 1 3.4563 2.2444 2.3652 16 6 2.0550 3.8516 2.2651 17 7 2.9803 4.7697 2.0912 18 14 0.2534 4.3412 2.3273 19 1 -0.1305 4.6392 3.7304 20 1 0.0391 5.5478 1.4885 21 1 -0.5808 3.2257 1.8122 22 1 -0.3634 0.7203 0.7330 23 1 -0.3634 0.2747 -0.9903 24 1 -0.3634 -0.9949 0.2573 25 1 3.0399 -2.4595 0.8106 26 1 3.6541 -3.3381 3.0270 27 1 3.2134 -2.0006 5.0472 28 1 2.1591 0.2156 4.8505 29 1 1.2073 1.7693 4.6326 30 1 0.1011 2.6392 3.7462 31 1 2.7273 5.7013 1.9956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238387807.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:56 Heat of formation + Delta-G solvation = -48.547652 kcal Electronic energy + Delta-G solvation = -17620.272574 eV Core-core repulsion = 14800.776532 eV Total energy + Delta-G solvation = -2819.496041 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.39570 -38.10512 -36.80601 -36.64152 -33.92867 -32.27782 -31.24386 -30.34697 -28.10733 -24.89352 -23.99461 -21.77031 -19.92682 -19.14950 -18.54086 -17.52951 -17.10741 -16.76226 -16.44748 -16.04042 -15.48140 -15.30013 -14.85602 -14.47454 -14.27782 -14.00465 -13.73207 -13.39393 -13.23660 -12.94663 -12.84408 -12.80836 -12.64532 -12.28163 -11.94504 -11.82718 -11.61953 -11.16603 -10.78537 -10.18099 -9.80911 -9.37183 -8.26521 -6.29284 -0.72718 0.03264 0.50560 1.23248 1.31370 1.39881 2.04776 2.27679 2.64469 3.03104 3.06890 3.44215 3.71821 3.93216 4.02363 4.09799 4.19684 4.21696 4.45595 4.60783 4.73653 4.88616 4.95139 5.14041 5.30520 5.40970 5.50735 5.54329 6.02215 6.10704 6.32798 6.57519 6.74399 7.30270 8.92280 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.011090 C = 0.008864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.297811 B = 2524.182596 C = 3158.096250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.475 3.525 3 O -0.946 6.946 4 O -0.978 6.978 5 C -0.672 4.672 6 C -0.041 4.041 7 C -0.154 4.154 8 C -0.065 4.065 9 C -0.147 4.147 10 C 0.036 3.964 11 C 0.187 3.813 12 H 0.054 0.946 13 N -0.833 5.833 14 C -0.500 4.500 15 H 0.024 0.976 16 C 0.014 3.986 17 N -0.945 5.945 18 Si 0.920 3.080 19 H -0.249 1.249 20 H -0.295 1.295 21 H -0.235 1.235 22 H 0.133 0.867 23 H 0.157 0.843 24 H 0.162 0.838 25 H 0.150 0.850 26 H 0.163 0.837 27 H 0.162 0.838 28 H 0.136 0.864 29 H 0.343 0.657 30 H 0.321 0.679 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 -13.953 1.914 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.659 3.341 3 O -0.944 6.944 4 O -0.975 6.975 5 C -0.760 4.760 6 C -0.060 4.060 7 C -0.172 4.172 8 C -0.083 4.083 9 C -0.166 4.166 10 C 0.034 3.966 11 C 0.077 3.923 12 H 0.072 0.928 13 N -0.368 5.368 14 C -0.540 4.540 15 H 0.042 0.958 16 C -0.183 4.183 17 N -0.586 5.586 18 Si 0.745 3.255 19 H -0.174 1.174 20 H -0.222 1.222 21 H -0.158 1.158 22 H 0.151 0.849 23 H 0.175 0.825 24 H 0.180 0.820 25 H 0.168 0.832 26 H 0.181 0.819 27 H 0.179 0.821 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.137 0.863 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.431 -14.196 1.075 16.060 hybrid contribution 0.067 1.601 0.508 1.681 sum -7.364 -12.595 1.583 14.676 Atomic orbital electron populations 1.30218 1.21594 1.13994 1.13483 1.05605 0.80038 0.74129 0.74306 1.93814 1.78259 1.36530 1.85747 1.93456 1.79419 1.62679 1.61975 1.30234 1.18923 1.06670 1.20182 1.21172 0.92613 0.92149 1.00019 1.21585 1.02063 1.01885 0.91684 1.21806 0.93186 0.92847 1.00413 1.21297 1.00714 0.97379 0.97176 1.19655 0.91230 0.92459 0.93235 1.18765 0.92132 0.90056 0.91353 0.92847 1.59755 1.32690 1.38566 1.05744 1.21300 0.93165 0.91317 1.48266 0.95798 1.25798 1.01821 0.96497 0.94219 1.70049 1.35421 1.01637 1.51447 0.86248 0.80789 0.78926 0.79579 1.17418 1.22239 1.15796 0.84909 0.82453 0.81951 0.83191 0.81943 0.82090 0.84635 0.84371 0.86286 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -15.78 10.47 113.37 1.19 -14.59 16 2 S 2.47 89.84 5.15 -56.49 -0.29 89.55 16 3 O -0.95 -46.25 14.52 -127.65 -1.85 -48.10 16 4 O -0.98 -36.69 16.75 -127.65 -2.14 -38.83 16 5 C -0.67 -24.72 5.60 22.27 0.12 -24.59 16 6 C -0.04 -1.25 9.50 22.27 0.21 -1.04 16 7 C -0.15 -3.90 10.05 22.27 0.22 -3.68 16 8 C -0.06 -1.70 10.05 22.27 0.22 -1.48 16 9 C -0.15 -4.95 9.28 22.27 0.21 -4.74 16 10 C 0.04 1.42 4.96 -19.86 -0.10 1.32 16 11 C 0.19 8.34 1.74 43.42 0.08 8.42 16 12 H 0.05 2.30 3.01 -2.39 -0.01 2.30 16 13 N -0.83 -32.62 8.81 -174.96 -1.54 -34.16 16 14 C -0.50 -28.47 7.21 25.60 0.18 -28.28 16 15 H 0.02 1.58 7.98 -2.91 -0.02 1.55 16 16 C 0.01 0.83 5.47 84.65 0.46 1.29 16 17 N -0.94 -60.29 13.96 21.45 0.30 -59.99 16 18 Si 0.92 41.99 24.61 68.60 1.69 43.67 16 19 H -0.25 -10.23 7.01 99.48 0.70 -9.54 16 20 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 21 H -0.23 -9.50 6.54 99.48 0.65 -8.85 16 22 H 0.13 3.57 5.83 -2.39 -0.01 3.56 16 23 H 0.16 2.95 8.14 -2.39 -0.02 2.93 16 24 H 0.16 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.15 4.09 7.23 -2.91 -0.02 4.07 16 26 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 27 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 28 H 0.14 4.24 6.34 -2.91 -0.02 4.22 16 29 H 0.34 12.62 7.18 -89.69 -0.64 11.98 16 30 H 0.32 12.66 4.30 -89.69 -0.39 12.27 16 31 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -79.42 261.38 -0.95 -80.37 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.08 Total: 34.86 kcal Atomic # 6 Polarization: -70.18 SS G_CDS: 2.80 Total: -67.37 kcal Atomic # 7 Polarization: -92.91 SS G_CDS: -1.24 Total: -94.15 kcal Atomic # 8 Polarization: -82.94 SS G_CDS: -3.99 Total: -86.94 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.69 Total: 43.67 kcal Atomic # 16 Polarization: 89.84 SS G_CDS: -0.29 Total: 89.55 kcal Total: -79.42 -0.95 -80.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238387807.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.826 kcal (2) G-P(sol) polarization free energy of solvation -79.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds