Wall clock time and date at job start Mon Mar 30 2020 04:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.37901 * 119.92824 * 264.72444 * 12 9 7 14 14 C 1.39652 * 119.85547 * 179.79149 * 13 12 9 15 15 C 1.47667 * 120.13507 * 180.25397 * 14 13 12 16 16 O 1.21480 * 119.99763 * 0.24914 * 15 14 13 17 17 O 1.34722 * 120.00102 * 180.25054 * 15 14 13 18 18 C 1.39688 * 119.72896 * 0.50167 * 14 13 12 19 19 C 1.37854 * 119.86108 * 359.72980 * 18 14 13 20 20 C 1.38503 * 119.93252 * 84.99931 * 12 9 7 21 21 Cl 1.73604 * 119.85990 * 359.97438 * 20 12 9 22 22 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.00901 * 110.99547 * 296.04468 * 11 9 7 24 24 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 25 25 H 1.07999 * 120.07405 * 359.97438 * 13 12 9 26 26 H 0.96701 * 116.99814 * 179.97438 * 17 15 14 27 27 H 1.08005 * 120.06492 * 179.70427 * 18 14 13 28 28 H 1.08004 * 119.92707 * 180.02562 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2304 -3.6446 0.0005 13 6 2.5939 -4.2390 -1.1895 14 6 3.5048 -5.2975 -1.1882 15 6 3.9027 -5.9348 -2.4594 16 8 3.4409 -5.5354 -3.5097 17 8 4.7779 -6.9590 -2.4545 18 6 4.0341 -5.7544 0.0211 19 6 3.6591 -5.1550 1.2046 20 6 2.7590 -4.1019 1.1962 21 17 2.2913 -3.3526 2.6908 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3004 -1.8577 -1.1910 24 1 0.9652 -2.5259 -2.0381 25 1 2.1774 -3.8847 -2.1208 26 1 5.0077 -7.3442 -3.3112 27 1 4.7353 -6.5758 0.0289 28 1 4.0680 -5.5071 2.1402 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238587256.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:23 Heat of formation + Delta-G solvation = -98.737845 kcal Electronic energy + Delta-G solvation = -16336.707847 eV Core-core repulsion = 13377.158595 eV Total energy + Delta-G solvation = -2959.549252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.44104 -39.98881 -37.29786 -37.04162 -36.62384 -33.65408 -32.11461 -31.02192 -28.05011 -25.66577 -24.94503 -22.37735 -21.68050 -18.94409 -18.60615 -18.47175 -17.31566 -16.87215 -16.63815 -16.48019 -15.59169 -15.24102 -14.92034 -14.47763 -14.17596 -13.93501 -13.51394 -13.13978 -12.87332 -12.74078 -12.63858 -12.37953 -12.33806 -12.10808 -11.94480 -11.72055 -11.29072 -10.69691 -9.89593 -9.68500 -9.21062 -8.11573 -6.34357 -0.42675 0.38471 1.25531 1.38577 1.39362 1.45808 1.49274 2.05021 2.37177 2.73577 3.07982 3.79645 3.88795 4.13271 4.17929 4.43201 4.60112 4.74967 4.92978 5.12306 5.18682 5.30616 5.57101 5.64767 5.71514 5.73252 6.04461 6.63079 6.89110 6.99371 7.06992 7.39262 8.84358 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.007528 C = 0.006303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.522101 B = 3718.363607 C = 4441.066281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.028 3.972 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.044 0.956 9 C 0.243 3.757 10 H 0.035 0.965 11 N -0.846 5.846 12 C -0.065 4.065 13 C -0.049 4.049 14 C -0.141 4.141 15 C 0.539 3.461 16 O -0.548 6.548 17 O -0.496 6.496 18 C -0.052 4.052 19 C -0.120 4.120 20 C -0.015 4.015 21 Cl -0.064 7.064 22 H 0.267 0.733 23 H 0.349 0.651 24 H 0.316 0.684 25 H 0.128 0.872 26 H 0.434 0.566 27 H 0.180 0.820 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.338 -12.171 0.703 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.173 4.173 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.585 4.585 8 H 0.063 0.937 9 C 0.133 3.867 10 H 0.053 0.947 11 N -0.376 5.376 12 C -0.066 4.066 13 C -0.068 4.068 14 C -0.143 4.143 15 C 0.385 3.615 16 O -0.440 6.440 17 O -0.309 6.309 18 C -0.070 4.070 19 C -0.138 4.138 20 C -0.042 4.042 21 Cl -0.034 7.034 22 H 0.076 0.924 23 H 0.164 0.836 24 H 0.127 0.873 25 H 0.146 0.854 26 H 0.296 0.704 27 H 0.197 0.803 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.695 -12.448 1.214 15.233 hybrid contribution 0.455 2.120 -0.691 2.276 sum 9.150 -10.328 0.523 13.808 Atomic orbital electron populations 1.69815 1.06771 1.27938 1.50768 1.25610 0.95636 1.01912 0.94120 0.85715 0.78505 0.79403 0.78642 1.20008 1.20786 1.19929 1.21775 0.92978 0.91850 1.51932 0.93731 1.17861 0.89084 0.88419 0.91351 0.94738 1.59559 1.18295 1.55557 1.04158 1.20165 0.97998 0.96854 0.91577 1.20953 0.94297 0.93395 0.98112 1.19217 1.02899 0.99852 0.92301 1.20685 0.75266 0.77186 0.88350 1.90889 1.54789 1.63715 1.34617 1.84490 1.57757 1.45823 1.42874 1.21578 0.97533 0.98817 0.89095 1.21314 0.97013 0.94654 1.00814 1.21368 0.99188 0.96522 0.87141 1.98355 1.91225 1.82075 1.31783 0.92354 0.83637 0.87346 0.85425 0.70370 0.80288 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.16 11.54 21.45 0.25 -49.92 15 2 C 0.03 1.48 5.38 84.65 0.46 1.93 15 3 Si 0.95 42.88 29.54 68.60 2.03 44.91 15 4 H -0.27 -12.21 7.11 99.48 0.71 -11.51 15 5 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 7 C -0.55 -28.93 8.71 25.60 0.22 -28.71 15 8 H 0.04 2.40 7.74 -2.91 -0.02 2.38 15 9 C 0.24 12.02 2.45 43.42 0.11 12.12 15 10 H 0.03 1.89 7.11 -2.39 -0.02 1.88 15 11 N -0.85 -40.98 8.78 -174.95 -1.54 -42.52 15 12 C -0.06 -2.72 4.99 -19.88 -0.10 -2.82 15 13 C -0.05 -1.88 8.81 22.53 0.20 -1.68 15 14 C -0.14 -4.37 5.87 -20.09 -0.12 -4.49 15 15 C 0.54 15.11 8.27 70.31 0.58 15.70 15 16 O -0.55 -19.20 17.13 19.90 0.34 -18.85 15 17 O -0.50 -8.73 12.68 -56.32 -0.71 -9.45 15 18 C -0.05 -1.28 9.61 22.53 0.22 -1.06 15 19 C -0.12 -3.21 9.81 22.25 0.22 -2.99 15 20 C -0.01 -0.54 6.32 22.40 0.14 -0.40 15 21 Cl -0.06 -2.34 27.37 -2.72 -0.07 -2.42 15 22 H 0.27 14.07 8.31 -92.71 -0.77 13.30 15 23 H 0.35 18.07 7.08 -89.69 -0.63 17.43 15 24 H 0.32 14.76 7.20 -89.70 -0.65 14.12 15 25 H 0.13 5.29 5.87 -2.91 -0.02 5.27 15 26 H 0.43 3.46 9.11 -74.06 -0.67 2.79 15 27 H 0.18 2.93 7.61 -2.91 -0.02 2.90 15 28 H 0.17 3.31 8.06 -2.91 -0.02 3.29 15 Total: -1.00 -63.57 266.68 1.51 -62.06 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -0.71 Total: 28.58 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 1.92 Total: -12.40 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -1.29 Total: -92.43 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.37 Total: -28.30 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.07 Total: -2.42 kcal Total: -63.57 1.51 -62.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238587256.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.674 kcal (2) G-P(sol) polarization free energy of solvation -63.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds