Wall clock time and date at job start Mon Mar 30 2020 04:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 119.99990 * 2 1 4 4 H 1.48507 * 109.47252 * 90.00097 * 3 2 1 5 5 H 1.48502 * 109.47510 * 330.00470 * 3 2 1 6 6 H 1.48503 * 109.47467 * 210.00293 * 3 2 1 7 7 C 1.37877 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00043 * 6.62795 * 7 2 1 9 9 C 1.50695 * 120.00312 * 186.63116 * 7 2 1 10 10 H 1.09004 * 109.47208 * 305.18812 * 9 7 2 11 11 N 1.46903 * 109.47217 * 65.18230 * 9 7 2 12 12 C 1.50697 * 109.47636 * 185.18587 * 9 7 2 13 13 C 1.38426 * 119.84114 * 99.99449 * 12 9 7 14 14 C 1.37878 * 120.19234 * 179.97438 * 13 12 9 15 15 C 1.39682 * 119.86145 * 359.97438 * 14 13 12 16 16 C 1.47647 * 120.16351 * 180.02562 * 15 14 13 17 17 O 1.21479 * 120.00066 * 179.97438 * 16 15 14 18 18 O 1.34713 * 119.99757 * 359.97438 * 16 15 14 19 19 C 1.39752 * 119.67705 * 359.97438 * 15 14 13 20 20 Cl 1.73595 * 120.09849 * 180.02562 * 19 15 14 21 21 C 1.38153 * 119.80464 * 359.77544 * 19 15 14 22 22 H 0.96999 * 119.99591 * 174.93718 * 1 2 3 23 23 H 1.00902 * 110.99919 * 293.55004 * 11 9 7 24 24 H 1.00902 * 111.00142 * 57.49779 * 11 9 7 25 25 H 1.08000 * 119.90088 * 359.97438 * 13 12 9 26 26 H 1.07999 * 120.07480 * 179.97438 * 14 13 12 27 27 H 0.96703 * 117.00156 * 180.02562 * 18 16 15 28 28 H 1.08003 * 119.92327 * 180.22916 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4700 -2.1262 -0.1089 9 6 3.5040 -1.1985 0.1502 10 1 3.9478 -0.5595 -0.6133 11 7 3.8638 -0.6928 1.4816 12 6 4.0208 -2.6051 -0.0095 13 6 4.5691 -3.0046 -1.2161 14 6 5.0447 -4.2896 -1.3699 15 6 4.9729 -5.1900 -0.3044 16 6 5.4807 -6.5674 -0.4617 17 8 5.4172 -7.3479 0.4671 18 8 6.0143 -6.9587 -1.6351 19 6 4.4192 -4.7803 0.9115 20 17 4.3252 -5.8900 2.2432 21 6 3.9516 -3.4880 1.0524 22 1 -0.4849 -0.8368 -0.0741 23 1 3.6218 0.2823 1.5756 24 1 3.4308 -1.2443 2.2071 25 1 4.6246 -2.3077 -2.0393 26 1 5.4717 -4.5994 -2.3123 27 1 6.3329 -7.8701 -1.6904 28 1 3.5267 -3.1683 1.9925 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238591309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:30 Heat of formation + Delta-G solvation = -71.725012 kcal Electronic energy + Delta-G solvation = -16220.509429 eV Core-core repulsion = 13262.131541 eV Total energy + Delta-G solvation = -2958.377888 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.26903 -38.75830 -36.37724 -35.87236 -35.01165 -32.15837 -30.55251 -30.35023 -26.33801 -24.31910 -22.67908 -21.51367 -20.10335 -18.12288 -17.83121 -17.34354 -15.92780 -15.56041 -15.17464 -14.84572 -14.11697 -13.74533 -13.64106 -13.28812 -12.91243 -12.67133 -12.49935 -12.02227 -11.47208 -11.29126 -11.17499 -11.05733 -10.96124 -10.52849 -10.11105 -9.77864 -9.38205 -8.79361 -8.64104 -8.50408 -7.79523 -6.64419 -4.43848 0.87421 1.49949 2.34338 2.73565 3.07176 3.17088 3.25759 3.38024 3.96288 4.21837 4.90177 4.98822 5.15056 5.25066 5.48634 5.62605 5.79973 5.93993 6.05245 6.32289 6.45033 6.50609 6.53937 6.96384 7.09727 7.52409 7.96217 7.99606 8.11865 8.25152 8.61937 9.30993 10.67287 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.033833 B = 0.005941 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.402902 B = 4712.269165 C = 5066.145376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.032 3.968 3 Si 1.047 2.953 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.625 4.625 8 H 0.060 0.940 9 C 0.199 3.801 10 H 0.059 0.941 11 N -0.851 5.851 12 C 0.036 3.964 13 C -0.138 4.138 14 C -0.049 4.049 15 C -0.156 4.156 16 C 0.525 3.475 17 O -0.502 6.502 18 O -0.516 6.516 19 C 0.024 3.976 20 Cl -0.048 7.048 21 C -0.115 4.115 22 H 0.271 0.729 23 H 0.325 0.675 24 H 0.331 0.669 25 H 0.134 0.866 26 H 0.139 0.861 27 H 0.410 0.590 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.640 -8.001 -1.756 13.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.875 3.125 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.665 4.665 8 H 0.078 0.922 9 C 0.090 3.910 10 H 0.077 0.923 11 N -0.383 5.383 12 C 0.034 3.966 13 C -0.156 4.156 14 C -0.067 4.067 15 C -0.158 4.158 16 C 0.369 3.631 17 O -0.391 6.391 18 O -0.328 6.328 19 C -0.003 4.003 20 Cl -0.018 7.018 21 C -0.134 4.134 22 H 0.082 0.918 23 H 0.139 0.861 24 H 0.143 0.857 25 H 0.152 0.848 26 H 0.157 0.843 27 H 0.268 0.732 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.013 -6.442 -1.497 12.846 hybrid contribution -0.849 -2.266 0.049 2.420 sum 10.164 -8.709 -1.449 13.463 Atomic orbital electron populations 1.70799 1.06713 1.31028 1.44434 1.25872 0.96397 1.02473 0.92743 0.83929 0.75394 0.75582 0.77619 1.20564 1.20999 1.19965 1.22620 0.90701 0.95839 1.57310 0.92163 1.18658 0.95121 0.87751 0.89460 0.92312 1.59717 1.66190 1.06804 1.05559 1.20462 0.87828 0.96998 0.91277 1.21143 1.00109 0.96107 0.98260 1.21292 0.95806 0.92428 0.97215 1.18586 1.10015 0.92009 0.95220 1.20791 0.74494 0.88135 0.79635 1.90948 1.53301 1.54530 1.40326 1.84561 1.73386 1.37206 1.37609 1.20993 0.99164 0.91724 0.88419 1.98382 1.96422 1.61931 1.45081 1.20837 1.01295 0.90250 1.00974 0.91838 0.86062 0.85651 0.84780 0.84284 0.73230 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 13.70 55.43 0.76 -25.12 15 2 C 0.03 0.85 5.46 -17.82 -0.10 0.76 15 3 Si 1.05 22.94 25.54 -169.99 -4.34 18.60 15 4 H -0.28 -5.73 6.93 56.52 0.39 -5.34 15 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.27 -5.57 6.36 56.52 0.36 -5.21 15 7 C -0.63 -16.00 9.06 -34.44 -0.31 -16.31 15 8 H 0.06 1.71 7.98 -52.48 -0.42 1.29 15 9 C 0.20 4.30 2.46 -70.02 -0.17 4.13 15 10 H 0.06 1.28 6.47 -51.93 -0.34 0.94 15 11 N -0.85 -17.07 8.98 -6.65 -0.06 -17.13 15 12 C 0.04 0.69 4.91 -104.54 -0.51 0.17 15 13 C -0.14 -2.30 9.65 -39.64 -0.38 -2.69 15 14 C -0.05 -0.73 9.62 -39.17 -0.38 -1.11 15 15 C -0.16 -2.55 5.88 -104.95 -0.62 -3.16 15 16 C 0.52 7.84 8.26 34.57 0.29 8.12 15 17 O -0.50 -8.50 14.76 -19.25 -0.28 -8.79 15 18 O -0.52 -5.69 12.68 -40.53 -0.51 -6.20 15 19 C 0.02 0.43 6.35 -39.05 -0.25 0.18 15 20 Cl -0.05 -0.80 26.03 -51.86 -1.35 -2.15 15 21 C -0.11 -2.12 9.07 -39.60 -0.36 -2.48 15 22 H 0.27 7.87 8.72 -40.82 -0.36 7.51 15 23 H 0.33 6.53 5.48 -39.29 -0.22 6.31 15 24 H 0.33 6.42 7.40 -39.29 -0.29 6.13 15 25 H 0.13 2.01 8.03 -52.49 -0.42 1.59 15 26 H 0.14 1.69 7.61 -52.49 -0.40 1.29 15 27 H 0.41 2.51 9.11 45.56 0.42 2.93 15 28 H 0.14 2.52 6.68 -52.48 -0.35 2.17 15 LS Contribution 260.28 15.07 3.92 3.92 Total: -1.00 -29.72 260.28 -5.88 -35.60 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -1.22 Total: 13.66 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.79 Total: -12.39 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.70 Total: -42.25 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.80 Total: -14.99 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.34 Total: 18.60 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.35 Total: -2.15 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.72 -5.88 -35.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238591309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.122 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds