Wall clock time and date at job start Mon Mar 30 2020 04:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48505 * 109.46998 * 270.00067 * 3 2 1 5 5 H 1.48499 * 109.47094 * 30.00070 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00167 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 300.00000 * 9 7 2 11 11 N 1.46893 * 109.47621 * 59.99802 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.38325 * 119.92654 * 264.72439 * 12 9 7 14 14 C 1.38384 * 120.32207 * 179.72359 * 13 12 9 15 15 C 1.37925 * 120.18944 * 0.54770 * 14 13 12 16 16 C 1.39639 * 119.86028 * 359.72949 * 15 14 13 17 17 C 1.47648 * 120.16285 * 180.02562 * 16 15 14 18 18 O 1.21475 * 120.00206 * 179.97438 * 17 16 15 19 19 O 1.34726 * 119.99593 * 359.97438 * 17 16 15 20 20 C 1.38096 * 119.93168 * 84.99534 * 12 9 7 21 21 Cl 1.73595 * 120.09670 * 0.02562 * 20 12 9 22 22 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99958 * 59.99981 * 11 9 7 24 24 H 1.00900 * 111.00360 * 183.95344 * 11 9 7 25 25 H 1.07999 * 119.83651 * 359.97438 * 13 12 9 26 26 H 1.07995 * 119.90602 * 180.27636 * 14 13 12 27 27 H 1.08002 * 120.07121 * 179.70356 * 15 14 13 28 28 H 0.96707 * 116.99604 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 0.4068 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.5957 -4.2403 -1.1952 14 6 3.4986 -5.2890 -1.2050 15 6 4.0325 -5.7557 -0.0220 16 6 3.6645 -5.1639 1.1881 17 6 4.2323 -5.6577 2.4584 18 8 3.9105 -5.1405 3.5093 19 8 5.1073 -6.6821 2.4519 20 6 2.7564 -4.1011 1.1910 21 17 2.2909 -3.3578 2.6891 22 1 -0.4850 0.8401 0.0004 23 1 0.9651 -2.5242 -2.0403 24 1 -0.1572 -3.4128 -1.1936 25 1 2.1775 -3.8825 -2.1244 26 1 3.7827 -5.7462 -2.1413 27 1 4.7333 -6.5774 -0.0314 28 1 5.4517 -6.9708 3.3082 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238594884.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:30 Heat of formation + Delta-G solvation = -60.069875 kcal Electronic energy + Delta-G solvation = -16490.838189 eV Core-core repulsion = 13532.965706 eV Total energy + Delta-G solvation = -2957.872483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.21364 -38.69441 -36.04123 -35.60999 -34.73974 -31.82044 -30.70088 -29.57850 -26.12778 -24.43843 -23.03846 -21.34576 -20.11741 -17.73628 -17.12884 -16.53180 -15.89019 -15.48617 -15.16488 -14.63023 -14.34439 -13.92019 -13.38952 -13.09408 -12.95417 -12.35587 -11.75323 -11.49018 -11.40720 -11.23207 -10.94537 -10.89317 -10.71265 -10.62643 -9.94635 -9.51067 -9.29033 -8.65011 -8.44457 -8.08811 -7.23525 -5.89454 -4.04191 0.86960 1.58580 2.74487 2.76922 3.12027 3.33940 3.41052 3.45049 3.97672 4.49211 4.95963 5.15819 5.22582 5.33692 5.58119 5.65145 5.82893 6.11833 6.21411 6.37773 6.52812 6.60337 6.66139 7.04053 7.38522 7.87676 8.01811 8.12002 8.53178 8.90009 9.08047 9.64085 11.15043 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.007615 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.073279 B = 3675.860954 C = 4160.000902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.087 3.913 3 Si 0.883 3.117 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.053 0.947 9 C 0.253 3.747 10 H 0.063 0.937 11 N -0.809 5.809 12 C -0.079 4.079 13 C -0.084 4.084 14 C -0.134 4.134 15 C -0.079 4.079 16 C -0.132 4.132 17 C 0.520 3.480 18 O -0.493 6.493 19 O -0.517 6.517 20 C 0.023 3.977 21 Cl -0.023 7.023 22 H 0.256 0.744 23 H 0.318 0.682 24 H 0.300 0.700 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.136 0.864 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.031 -12.339 -0.261 14.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.120 4.120 3 Si 0.711 3.289 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.071 0.929 9 C 0.143 3.857 10 H 0.081 0.919 11 N -0.335 5.335 12 C -0.083 4.083 13 C -0.103 4.103 14 C -0.152 4.152 15 C -0.097 4.097 16 C -0.134 4.134 17 C 0.364 3.636 18 O -0.381 6.381 19 O -0.330 6.330 20 C -0.005 4.005 21 Cl 0.007 6.993 22 H 0.066 0.934 23 H 0.131 0.869 24 H 0.111 0.889 25 H 0.150 0.850 26 H 0.146 0.854 27 H 0.153 0.847 28 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 6.199 -11.178 0.062 12.782 hybrid contribution 1.351 -0.100 0.402 1.413 sum 7.550 -11.278 0.464 13.580 Atomic orbital electron populations 1.70090 1.05635 1.25792 1.46396 1.24884 0.94621 0.98438 0.94065 0.86758 0.80129 0.83994 0.78028 1.20716 1.21231 1.19934 1.20650 0.92038 0.88931 1.54765 0.92907 1.18382 0.87462 0.88236 0.91640 0.91937 1.59164 1.27915 1.42186 1.04244 1.21848 0.98646 0.97761 0.90016 1.21306 0.96210 0.94584 0.98180 1.21117 0.98300 0.97903 0.97866 1.21176 0.98761 0.98992 0.90773 1.18809 1.02816 1.00268 0.91523 1.20862 0.76239 0.77008 0.89473 1.90975 1.57853 1.56036 1.33241 1.84556 1.57846 1.49592 1.40969 1.20944 0.96282 0.93450 0.89811 1.98400 1.90210 1.80894 1.29830 0.93371 0.86880 0.88931 0.84998 0.85416 0.84657 0.73252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.08 12.77 55.43 0.71 -23.37 15 2 C 0.09 2.38 5.39 -17.82 -0.10 2.28 15 3 Si 0.88 21.23 29.54 -169.99 -5.02 16.21 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 15 6 H -0.27 -6.61 7.11 56.52 0.40 -6.20 15 7 C -0.53 -13.95 8.71 -34.44 -0.30 -14.25 15 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 15 9 C 0.25 5.98 2.36 -70.02 -0.17 5.81 15 10 H 0.06 1.65 7.12 -51.93 -0.37 1.29 15 11 N -0.81 -17.77 8.13 -6.65 -0.05 -17.82 15 12 C -0.08 -1.60 4.98 -104.64 -0.52 -2.12 15 13 C -0.08 -1.39 9.27 -39.50 -0.37 -1.76 15 14 C -0.13 -1.84 10.03 -39.64 -0.40 -2.24 15 15 C -0.08 -1.11 9.62 -39.17 -0.38 -1.49 15 16 C -0.13 -2.25 5.88 -104.95 -0.62 -2.87 15 17 C 0.52 8.26 8.26 34.57 0.29 8.55 15 18 O -0.49 -9.10 14.76 -19.25 -0.28 -9.38 15 19 O -0.52 -5.91 12.68 -40.56 -0.51 -6.42 15 20 C 0.02 0.46 6.35 -39.05 -0.25 0.22 15 21 Cl -0.02 -0.49 24.46 -51.86 -1.27 -1.76 15 22 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 23 H 0.32 6.47 7.20 -39.29 -0.28 6.19 15 24 H 0.30 5.83 9.06 -39.29 -0.36 5.47 15 25 H 0.13 1.99 6.27 -52.49 -0.33 1.66 15 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.14 1.55 7.61 -52.49 -0.40 1.15 15 28 H 0.41 2.70 9.11 45.56 0.42 3.12 15 LS Contribution 264.97 15.07 3.99 3.99 Total: -1.00 -31.36 264.97 -6.53 -37.89 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -1.29 Total: 8.53 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -2.80 Total: -7.86 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.65 Total: -41.19 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.80 Total: -15.81 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.27 Total: -1.76 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.36 -6.53 -37.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238594884.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.183 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds