Wall clock time and date at job start Mon Mar 30 2020 04:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00307 * 2 1 4 4 H 1.48501 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46821 * 299.99877 * 3 2 1 6 6 H 1.48494 * 109.47204 * 60.00209 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99815 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 300.00000 * 9 7 2 11 11 N 1.46893 * 109.47621 * 59.99802 * 9 7 2 12 12 C 1.50706 * 109.47178 * 180.02562 * 9 7 2 13 13 C 1.37922 * 120.06471 * 264.72333 * 12 9 7 14 14 C 1.38390 * 120.18379 * 179.77176 * 13 12 9 15 15 C 1.38316 * 120.33061 * 0.50266 * 14 13 12 16 16 C 1.38107 * 120.13290 * 359.74782 * 15 14 13 17 17 Cl 1.73600 * 120.09704 * 179.97438 * 16 15 14 18 18 C 1.39635 * 120.07323 * 84.99590 * 12 9 7 19 19 C 1.47653 * 120.15834 * 359.95731 * 18 12 9 20 20 O 1.21476 * 120.00009 * 90.00263 * 19 18 12 21 21 O 1.34721 * 119.99811 * 269.99592 * 19 18 12 22 22 H 0.97001 * 119.99839 * 359.97438 * 1 2 3 23 23 H 1.00899 * 110.99958 * 59.99981 * 11 9 7 24 24 H 1.00900 * 111.00360 * 183.95344 * 11 9 7 25 25 H 1.07995 * 119.91009 * 359.97438 * 13 12 9 26 26 H 1.08002 * 119.83640 * 180.23045 * 14 13 12 27 27 H 1.07992 * 119.93497 * 179.72744 * 15 14 13 28 28 H 0.96702 * 116.99943 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 1 0.6239 -2.5574 0.8880 11 7 0.4068 -2.5762 -1.2014 12 6 2.2302 -3.6447 -0.0015 13 6 2.5966 -4.2407 -1.1900 14 6 3.4993 -5.2897 -1.1931 15 6 4.0329 -5.7555 -0.0051 16 6 3.6714 -5.1719 1.1933 17 17 4.3412 -5.7577 2.6839 18 6 2.7640 -4.1086 1.2025 19 6 2.3724 -3.4787 2.4792 20 8 1.4142 -3.9000 3.0957 21 8 3.0778 -2.4367 2.9605 22 1 -0.4850 0.8401 0.0004 23 1 0.9651 -2.5242 -2.0403 24 1 -0.1572 -3.4128 -1.1936 25 1 2.1805 -3.8856 -2.1212 26 1 3.7852 -5.7498 -2.1275 27 1 4.7334 -6.5773 -0.0145 28 1 2.7831 -2.0571 3.7997 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238595105.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:13 Heat of formation + Delta-G solvation = -68.768075 kcal Electronic energy + Delta-G solvation = -16788.607637 eV Core-core repulsion = 13830.357972 eV Total energy + Delta-G solvation = -2958.249666 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.08123 -38.47423 -36.50505 -35.45567 -34.67823 -31.81395 -31.11973 -29.40930 -26.22961 -24.32902 -23.23879 -20.99657 -20.18416 -17.78305 -17.00452 -16.57255 -15.89579 -15.81004 -14.66032 -14.39632 -14.19656 -14.00124 -13.44852 -13.28537 -12.87714 -12.51848 -11.99535 -11.57982 -11.26259 -11.15514 -10.97347 -10.93142 -10.84500 -10.64358 -10.16747 -9.91622 -9.43547 -8.65028 -8.53433 -8.27522 -7.30757 -5.96565 -4.13130 1.19907 1.51515 2.15647 2.65573 3.28856 3.37367 3.41736 3.49492 3.87829 4.43171 4.97052 5.15095 5.26939 5.40839 5.56673 5.59969 5.83191 6.06330 6.18565 6.30070 6.52749 6.62216 6.94677 6.99176 7.26023 7.82027 7.99911 8.38539 8.45866 8.83677 9.00786 9.56381 11.07687 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.008300 C = 0.007264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.289049 B = 3372.833656 C = 3853.900655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.086 3.914 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.247 3.753 10 H 0.053 0.947 11 N -0.806 5.806 12 C -0.021 4.021 13 C -0.128 4.128 14 C -0.086 4.086 15 C -0.138 4.138 16 C 0.000 4.000 17 Cl -0.072 7.072 18 C -0.101 4.101 19 C 0.553 3.447 20 O -0.511 6.511 21 O -0.492 6.492 22 H 0.257 0.743 23 H 0.320 0.680 24 H 0.302 0.698 25 H 0.134 0.866 26 H 0.131 0.869 27 H 0.133 0.867 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 -9.330 0.208 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.122 4.122 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.137 3.863 10 H 0.071 0.929 11 N -0.333 5.333 12 C -0.024 4.024 13 C -0.146 4.146 14 C -0.105 4.105 15 C -0.157 4.157 16 C -0.027 4.027 17 Cl -0.043 7.043 18 C -0.103 4.103 19 C 0.396 3.604 20 O -0.400 6.400 21 O -0.301 6.301 22 H 0.067 0.933 23 H 0.134 0.866 24 H 0.113 0.887 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.151 0.849 28 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.823 -8.856 0.399 11.186 hybrid contribution 0.914 0.224 0.435 1.037 sum 7.737 -8.631 0.834 11.621 Atomic orbital electron populations 1.70117 1.05745 1.25889 1.46042 1.24933 0.94643 0.98681 0.93937 0.86626 0.80352 0.83931 0.77575 1.19662 1.20998 1.20999 1.20747 0.92341 0.88643 1.55150 0.92298 1.18417 0.87408 0.88688 0.91752 0.92905 1.59109 1.27732 1.42379 1.04080 1.22019 0.95434 0.95204 0.89722 1.21081 0.98759 0.96450 0.98347 1.21203 0.95844 0.96084 0.97339 1.20758 1.02719 1.01864 0.90370 1.20845 0.97145 0.96985 0.87696 1.98357 1.84448 1.87808 1.33705 1.18776 1.01615 0.97511 0.92434 1.20476 0.79254 0.76703 0.84017 1.90865 1.27206 1.62930 1.59010 1.84703 1.57204 1.45547 1.42688 0.93300 0.86595 0.88697 0.84870 0.85134 0.84886 0.73612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.98 12.77 55.43 0.71 -23.28 15 2 C 0.09 2.31 5.39 -17.82 -0.10 2.22 15 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 7 C -0.53 -13.98 8.71 -34.44 -0.30 -14.28 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.25 5.94 2.37 -70.02 -0.17 5.78 15 10 H 0.05 1.47 7.28 -51.93 -0.38 1.09 15 11 N -0.81 -17.95 8.13 -6.65 -0.05 -18.00 15 12 C -0.02 -0.42 5.02 -104.21 -0.52 -0.94 15 13 C -0.13 -2.13 9.26 -39.64 -0.37 -2.50 15 14 C -0.09 -1.19 10.04 -39.50 -0.40 -1.59 15 15 C -0.14 -1.97 9.82 -39.60 -0.39 -2.36 15 16 C 0.00 0.00 6.35 -39.05 -0.25 -0.24 15 17 Cl -0.07 -1.11 28.04 -51.86 -1.45 -2.56 15 18 C -0.10 -2.02 5.76 -104.95 -0.60 -2.62 15 19 C 0.55 11.57 5.39 34.57 0.19 11.76 15 20 O -0.51 -11.62 17.89 -19.25 -0.34 -11.97 15 21 O -0.49 -9.21 13.44 -40.55 -0.54 -9.76 15 22 H 0.26 6.99 8.31 -40.82 -0.34 6.65 15 23 H 0.32 6.54 7.21 -39.29 -0.28 6.26 15 24 H 0.30 6.02 9.06 -39.29 -0.36 5.66 15 25 H 0.13 2.02 6.28 -52.49 -0.33 1.69 15 26 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 15 28 H 0.41 5.59 9.11 45.56 0.42 6.00 15 LS Contribution 270.34 15.07 4.07 4.07 Total: -1.00 -31.53 270.34 -6.86 -38.39 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -1.32 Total: 12.06 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.90 Total: -4.78 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.65 Total: -41.28 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.89 Total: -21.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.45 Total: -2.56 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.53 -6.86 -38.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595105.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.382 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds