Wall clock time and date at job start Mon Mar 30 2020 04:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99698 * 2 1 4 4 H 1.48504 * 109.47054 * 85.00785 * 3 2 1 5 5 H 1.48504 * 109.46716 * 205.00598 * 3 2 1 6 6 H 1.48499 * 109.47302 * 325.00551 * 3 2 1 7 7 C 1.37878 * 119.99829 * 179.72249 * 2 1 3 8 8 H 1.07995 * 119.99942 * 182.96082 * 7 2 1 9 9 C 1.50702 * 120.00461 * 2.96956 * 7 2 1 10 10 H 1.09003 * 109.47191 * 59.12050 * 9 7 2 11 11 N 1.46903 * 109.46858 * 299.13009 * 9 7 2 12 12 C 1.50694 * 109.47183 * 179.12774 * 9 7 2 13 13 C 1.38090 * 120.08461 * 76.96679 * 12 9 7 14 14 Cl 1.73599 * 119.93763 * 359.97438 * 13 12 9 15 15 C 1.38451 * 120.11950 * 179.74252 * 13 12 9 16 16 C 1.38371 * 120.29363 * 0.50834 * 15 13 12 17 17 C 1.37927 * 120.16458 * 359.76285 * 16 15 13 18 18 C 1.39593 * 120.08351 * 257.23369 * 12 9 7 19 19 C 1.47741 * 120.14079 * 0.03063 * 18 12 9 20 20 O 1.21464 * 119.99966 * 6.64895 * 19 18 12 21 21 O 1.34715 * 119.99406 * 186.64712 * 19 18 12 22 22 H 0.97001 * 120.00474 * 0.02562 * 1 2 3 23 23 H 1.00906 * 110.99546 * 322.95456 * 11 9 7 24 24 H 1.00894 * 111.00183 * 86.90306 * 11 9 7 25 25 H 1.08009 * 119.85291 * 180.25286 * 15 13 12 26 26 H 1.08001 * 119.91742 * 179.75030 * 16 15 13 27 27 H 1.07998 * 120.06023 * 179.97438 * 17 16 15 28 28 H 0.96700 * 116.99287 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.3910 2.1074 1.3948 5 1 3.5954 1.4120 -0.5919 6 1 1.5032 2.6199 -0.8029 7 6 2.0045 -1.1941 0.0058 8 1 3.0833 -1.1945 0.0541 9 6 1.2525 -2.4987 -0.0555 10 1 0.6543 -2.5308 -0.9662 11 7 0.3704 -2.6108 1.1138 12 6 2.2323 -3.6436 -0.0573 13 6 2.8501 -4.0278 1.1164 14 17 2.4976 -3.1901 2.5955 15 6 3.7464 -5.0831 1.1166 16 6 4.0370 -5.7522 -0.0592 17 6 3.4311 -5.3748 -1.2393 18 6 2.5220 -4.3148 -1.2465 19 6 1.8700 -3.9051 -2.5073 20 8 1.1746 -2.9097 -2.5359 21 8 2.0469 -4.6357 -3.6253 22 1 -0.4851 0.8400 -0.0004 23 1 0.8083 -2.2220 1.9356 24 1 -0.5211 -2.1724 0.9376 25 1 4.2240 -5.3826 2.0379 26 1 4.7402 -6.5719 -0.0528 27 1 3.6595 -5.8980 -2.1561 28 1 1.6004 -4.3279 -4.4259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238612384.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:01 Heat of formation + Delta-G solvation = -78.754393 kcal Electronic energy + Delta-G solvation = -16950.902502 eV Core-core repulsion = 13992.219797 eV Total energy + Delta-G solvation = -2958.682705 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.50793 -39.69500 -37.25562 -37.12833 -36.17451 -33.45293 -32.15035 -30.96797 -27.85729 -25.77087 -24.48764 -22.51709 -21.65748 -19.01534 -18.71276 -18.06943 -17.21611 -16.66541 -16.47589 -16.18497 -15.86256 -15.30567 -14.86984 -14.38711 -14.27225 -14.01251 -13.32205 -13.06657 -12.88090 -12.69742 -12.53416 -12.44492 -12.16760 -11.92898 -11.74249 -11.40692 -10.88939 -10.17423 -9.88741 -9.46813 -9.10872 -8.07504 -6.23333 -0.23588 0.41123 1.33570 1.34686 1.41237 1.44911 1.63031 2.19797 2.38019 2.82171 3.15659 3.97638 4.06460 4.09502 4.28800 4.50630 4.75074 4.91122 5.10743 5.13931 5.34812 5.37144 5.64137 5.66995 5.85590 6.04473 6.15744 6.78222 6.97430 7.12801 7.26532 7.44436 8.91515 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.010786 C = 0.007964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.105626 B = 2595.272081 C = 3514.964625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.037 0.963 9 C 0.199 3.801 10 H 0.076 0.924 11 N -0.840 5.840 12 C 0.005 3.995 13 C -0.056 4.056 14 Cl -0.059 7.059 15 C -0.076 4.076 16 C -0.129 4.129 17 C -0.052 4.052 18 C -0.154 4.154 19 C 0.517 3.483 20 O -0.519 6.519 21 O -0.502 6.502 22 H 0.261 0.739 23 H 0.327 0.673 24 H 0.323 0.677 25 H 0.162 0.838 26 H 0.183 0.817 27 H 0.168 0.832 28 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.316 -12.395 -1.581 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.055 0.945 9 C 0.090 3.910 10 H 0.093 0.907 11 N -0.372 5.372 12 C 0.003 3.997 13 C -0.083 4.083 14 Cl -0.030 7.030 15 C -0.094 4.094 16 C -0.147 4.147 17 C -0.070 4.070 18 C -0.156 4.156 19 C 0.362 3.638 20 O -0.410 6.410 21 O -0.316 6.316 22 H 0.071 0.929 23 H 0.143 0.857 24 H 0.134 0.866 25 H 0.180 0.820 26 H 0.200 0.800 27 H 0.185 0.815 28 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 8.199 -12.861 -1.217 15.301 hybrid contribution -0.361 2.781 -0.397 2.832 sum 7.838 -10.080 -1.614 12.871 Atomic orbital electron populations 1.69954 1.06830 1.27245 1.51451 1.25606 0.95679 1.01855 0.94781 0.85687 0.78703 0.79997 0.78110 1.19929 1.19889 1.20900 1.21583 0.92411 0.91869 1.50331 0.94516 1.18777 0.90777 0.87984 0.93477 0.90728 1.59950 1.07478 1.63013 1.06748 1.20561 0.93990 0.94048 0.91082 1.20769 1.01635 0.98353 0.87531 1.98272 1.93728 1.77941 1.33104 1.21694 0.94371 0.92099 1.01273 1.21448 1.01451 1.01541 0.90213 1.21771 0.91956 0.92554 1.00758 1.18972 1.04648 1.02063 0.89893 1.21113 0.77805 0.80126 0.84708 1.90882 1.38400 1.27157 1.84537 1.84464 1.71105 1.55331 1.20665 0.92950 0.85667 0.86592 0.82023 0.79970 0.81484 0.71045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.20 12.00 21.45 0.26 -53.94 15 2 C 0.02 1.17 5.40 84.66 0.46 1.62 15 3 Si 0.95 45.77 29.54 68.60 2.03 47.79 15 4 H -0.27 -12.74 7.11 99.48 0.71 -12.04 15 5 H -0.27 -13.05 7.11 99.48 0.71 -12.34 15 6 H -0.28 -13.44 7.11 99.48 0.71 -12.73 15 7 C -0.52 -29.86 7.99 25.60 0.20 -29.66 15 8 H 0.04 2.13 7.74 -2.91 -0.02 2.11 15 9 C 0.20 10.64 2.17 43.42 0.09 10.73 15 10 H 0.08 4.49 4.51 -36.87 -0.17 4.32 15 11 N -0.84 -43.48 8.11 -174.95 -1.42 -44.90 15 12 C 0.01 0.23 4.93 -19.57 -0.10 0.13 15 13 C -0.06 -2.15 6.18 22.29 0.14 -2.01 15 14 Cl -0.06 -2.33 24.30 -2.72 -0.07 -2.40 15 15 C -0.08 -2.08 9.82 22.35 0.22 -1.86 15 16 C -0.13 -2.85 10.03 22.23 0.22 -2.63 15 17 C -0.05 -1.39 9.61 22.54 0.22 -1.17 15 18 C -0.15 -5.82 5.87 -20.10 -0.12 -5.94 15 19 C 0.52 19.86 8.22 70.33 0.58 20.44 15 20 O -0.52 -25.36 13.87 19.95 0.28 -25.08 15 21 O -0.50 -13.13 12.70 -56.25 -0.71 -13.84 15 22 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 23 H 0.33 16.67 5.47 -89.69 -0.49 16.18 15 24 H 0.32 17.85 7.96 -89.70 -0.71 17.14 15 25 H 0.16 3.33 8.06 -2.91 -0.02 3.31 15 26 H 0.18 2.21 8.06 -2.91 -0.02 2.19 15 27 H 0.17 3.27 7.63 -2.91 -0.02 3.25 15 28 H 0.43 7.37 9.11 -74.06 -0.67 6.69 15 Total: -1.00 -72.10 258.91 1.49 -70.61 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -0.79 Total: 32.11 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 1.92 Total: -10.34 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -1.16 Total: -98.85 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.44 Total: -38.92 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -0.07 Total: -2.40 kcal Total: -72.10 1.49 -70.61 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612384.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.145 kcal (2) G-P(sol) polarization free energy of solvation -72.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds