Wall clock time and date at job start Mon Mar 30 2020 04:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99661 * 2 1 4 4 H 1.48505 * 109.46935 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47122 * 299.99115 * 3 2 1 6 6 H 1.48491 * 109.47661 * 59.99686 * 3 2 1 7 7 C 1.37873 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99586 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00352 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47517 * 59.99621 * 9 7 2 11 11 N 1.46902 * 109.47050 * 299.99819 * 9 7 2 12 12 C 1.50700 * 109.47399 * 179.97438 * 9 7 2 13 13 C 1.38295 * 120.35065 * 99.97551 * 12 9 7 14 14 C 1.40058 * 118.30561 * 180.02562 * 13 12 9 15 15 C 1.47777 * 120.54538 * 180.02562 * 14 13 12 16 16 N 1.34778 * 119.99763 * 179.97438 * 15 14 13 17 17 O 1.21562 * 120.00104 * 359.95249 * 15 14 13 18 18 C 1.39561 * 118.90691 * 359.97438 * 14 13 12 19 19 N 1.31664 * 120.57889 * 0.02562 * 18 14 13 20 20 C 1.32069 * 121.86320 * 0.02562 * 19 18 14 21 21 Cl 1.73601 * 119.47656 * 179.97438 * 20 19 18 22 22 H 0.96998 * 120.00036 * 0.02562 * 1 2 3 23 23 H 1.00898 * 111.00250 * 299.99887 * 11 9 7 24 24 H 1.00903 * 111.00002 * 63.95625 * 11 9 7 25 25 H 1.08004 * 120.85146 * 0.02562 * 13 12 9 26 26 H 0.96996 * 119.99870 * 0.02562 * 16 15 14 27 27 H 0.97001 * 119.99655 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.70680 * 180.30282 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8896 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6446 0.0005 13 6 2.5273 -4.3101 1.1759 14 6 3.4439 -5.3680 1.1268 15 6 3.7968 -6.1135 2.3529 16 7 4.6797 -7.1300 2.2929 17 8 3.2910 -5.8096 3.4158 18 6 4.0176 -5.7071 -0.0994 19 7 3.7032 -5.0436 -1.1924 20 6 2.8433 -4.0414 -1.1765 21 17 2.4744 -3.2088 -2.6545 22 1 -0.4850 0.8400 -0.0004 23 1 0.9638 -2.5251 2.0390 24 1 -0.3013 -1.8572 1.1908 25 1 2.0643 -4.0214 2.1080 26 1 5.0838 -7.3719 1.4449 27 1 4.9116 -7.6191 3.0978 28 1 4.7222 -6.5239 -0.1530 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238614762.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:22 Heat of formation + Delta-G solvation = -38.953232 kcal Electronic energy + Delta-G solvation = -16387.148826 eV Core-core repulsion = 13462.484780 eV Total energy + Delta-G solvation = -2924.664046 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.70672 -39.96422 -37.52525 -37.04649 -34.88735 -34.02968 -32.74386 -31.34476 -28.12424 -25.74438 -25.37225 -22.89210 -21.39269 -19.18932 -18.64293 -18.39250 -18.01188 -17.17851 -16.63141 -16.11282 -15.98566 -15.23774 -15.12141 -14.79888 -14.47260 -14.18096 -13.82881 -13.19506 -12.87043 -12.81302 -12.61526 -12.21268 -12.03807 -11.99283 -11.33540 -10.90361 -10.74660 -10.62895 -10.61010 -9.86524 -9.25183 -8.14016 -6.36187 -0.56289 0.18225 0.88463 1.36018 1.40476 1.49723 1.71959 2.36491 2.43606 2.72596 3.06042 3.38333 3.63341 3.79837 3.94808 4.02802 4.38787 4.66053 4.91379 4.97860 5.34818 5.55119 5.63661 5.86999 5.98851 6.36773 6.55306 6.59967 6.85602 7.05133 7.26254 7.37642 8.83015 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.007487 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.955529 B = 3738.872262 C = 4408.116187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.031 3.969 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.044 0.956 9 C 0.248 3.752 10 H 0.037 0.963 11 N -0.845 5.845 12 C -0.094 4.094 13 C -0.010 4.010 14 C -0.196 4.196 15 C 0.576 3.424 16 N -0.819 5.819 17 O -0.579 6.579 18 C 0.144 3.856 19 N -0.490 5.490 20 C 0.178 3.822 21 Cl -0.024 7.024 22 H 0.268 0.732 23 H 0.318 0.682 24 H 0.351 0.649 25 H 0.144 0.856 26 H 0.419 0.581 27 H 0.418 0.582 28 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.382 -12.330 0.246 15.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.170 4.170 3 Si 0.777 3.223 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.062 0.938 9 C 0.137 3.863 10 H 0.055 0.945 11 N -0.375 5.375 12 C -0.098 4.098 13 C -0.036 4.036 14 C -0.202 4.202 15 C 0.361 3.639 16 N -0.385 5.385 17 O -0.460 6.460 18 C -0.016 4.016 19 N -0.201 5.201 20 C 0.016 3.984 21 Cl 0.005 6.995 22 H 0.078 0.922 23 H 0.128 0.872 24 H 0.167 0.833 25 H 0.162 0.838 26 H 0.252 0.748 27 H 0.251 0.749 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.950 -12.784 -0.404 15.611 hybrid contribution 0.322 2.215 0.592 2.316 sum 9.272 -10.569 0.188 14.061 Atomic orbital electron populations 1.69814 1.06693 1.27928 1.50592 1.25566 0.95625 1.01806 0.94003 0.85612 0.78915 0.80027 0.77721 1.19847 1.20555 1.20455 1.21752 0.92907 0.91605 1.52147 0.93797 1.17790 0.88869 0.87951 0.91691 0.94486 1.59525 1.18212 1.55731 1.03993 1.21011 0.98817 0.98068 0.91883 1.21570 0.92456 0.91320 0.98295 1.21078 1.02527 1.00340 0.96205 1.17859 0.78958 0.80267 0.86818 1.43420 1.44748 1.34098 1.16215 1.90825 1.54942 1.68487 1.31729 1.23415 0.96306 0.97197 0.84662 1.67058 1.13916 1.06745 1.32367 1.21744 0.95180 0.93240 0.88207 1.98386 1.92344 1.75449 1.33303 0.92237 0.87179 0.83300 0.83794 0.74836 0.74873 0.76710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.99 11.54 21.45 0.25 -48.75 15 2 C 0.03 1.61 5.38 84.65 0.46 2.07 15 3 Si 0.95 42.38 29.54 68.60 2.03 44.41 15 4 H -0.27 -12.16 7.11 99.48 0.71 -11.46 15 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 7 C -0.54 -28.38 8.48 25.60 0.22 -28.17 15 8 H 0.04 2.35 7.74 -2.91 -0.02 2.33 15 9 C 0.25 12.06 2.41 43.42 0.10 12.17 15 10 H 0.04 2.00 7.35 -2.39 -0.02 1.98 15 11 N -0.84 -39.75 8.68 -174.95 -1.52 -41.27 15 12 C -0.09 -3.98 5.04 -19.79 -0.10 -4.08 15 13 C -0.01 -0.37 8.89 22.73 0.20 -0.16 15 14 C -0.20 -5.76 5.89 -19.99 -0.12 -5.88 15 15 C 0.58 15.03 8.05 86.77 0.70 15.73 15 16 N -0.82 -10.91 8.83 -175.65 -1.55 -12.46 15 17 O -0.58 -20.48 17.26 -3.91 -0.07 -20.55 15 18 C 0.14 3.56 10.71 85.04 0.91 4.47 15 19 N -0.49 -16.00 10.32 -185.57 -1.92 -17.92 15 20 C 0.18 7.00 7.26 84.72 0.62 7.62 15 21 Cl -0.02 -0.93 27.46 -2.72 -0.07 -1.00 15 22 H 0.27 13.76 8.31 -92.71 -0.77 12.99 15 23 H 0.32 14.33 7.34 -89.70 -0.66 13.67 15 24 H 0.35 17.72 7.08 -89.69 -0.63 17.08 15 25 H 0.14 5.73 6.04 -2.91 -0.02 5.72 15 26 H 0.42 2.52 6.89 -92.71 -0.64 1.88 15 27 H 0.42 4.17 8.93 -92.71 -0.83 3.34 15 28 H 0.22 2.58 6.42 -2.91 -0.02 2.56 15 Total: -1.00 -65.40 263.16 -1.35 -66.75 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -1.49 Total: 27.02 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 2.99 Total: 3.77 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.74 Total: -120.39 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.07 Total: -20.55 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.07 Total: -1.00 kcal Total: -65.40 -1.35 -66.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238614762.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.798 kcal (2) G-P(sol) polarization free energy of solvation -65.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds