Wall clock time and date at job start Mon Mar 30 2020 04:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00363 * 2 1 4 4 H 1.48497 * 109.47357 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46790 * 300.00455 * 3 2 1 6 6 H 1.48497 * 109.47074 * 59.99914 * 3 2 1 7 7 C 1.37883 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00226 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47126 * 59.99844 * 9 7 2 11 11 N 1.46891 * 109.47004 * 299.99925 * 9 7 2 12 12 C 1.50700 * 109.46923 * 179.97438 * 9 7 2 13 13 C 1.37925 * 120.06698 * 100.00308 * 12 9 7 14 14 C 1.38389 * 120.18889 * 179.97438 * 13 12 9 15 15 C 1.38316 * 120.32736 * 0.02562 * 14 13 12 16 16 C 1.38105 * 120.13425 * 0.02562 * 15 14 13 17 17 Cl 1.73605 * 120.09336 * 180.02562 * 16 15 14 18 18 C 1.39642 * 120.07293 * 279.97626 * 12 9 7 19 19 C 1.47639 * 120.15847 * 0.04884 * 18 12 9 20 20 O 1.21485 * 120.00055 * 90.00259 * 19 18 12 21 21 O 1.34726 * 120.00159 * 269.99295 * 19 18 12 22 22 H 0.97001 * 119.99905 * 359.97438 * 1 2 3 23 23 H 1.00896 * 111.00445 * 299.99856 * 11 9 7 24 24 H 1.00902 * 111.00617 * 63.95309 * 11 9 7 25 25 H 1.08001 * 119.90636 * 359.69580 * 13 12 9 26 26 H 1.08003 * 119.83583 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.93296 * 179.97438 * 15 14 13 28 28 H 0.96700 * 117.00141 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6239 -2.5575 -0.8880 11 7 0.4069 -2.5762 1.2015 12 6 2.2302 -3.6446 0.0015 13 6 2.5226 -4.3041 1.1770 14 6 3.4211 -5.3566 1.1796 15 6 4.0331 -5.7553 0.0051 16 6 3.7510 -5.1038 -1.1795 17 17 4.5193 -5.6055 -2.6533 18 6 2.8431 -4.0410 -1.1890 19 6 2.5354 -3.3394 -2.4511 20 8 3.1969 -2.3780 -2.7886 21 8 1.5210 -3.7655 -3.2286 22 1 -0.4850 0.8401 0.0004 23 1 0.9652 -2.5242 2.0403 24 1 -0.3005 -1.8567 1.1928 25 1 2.0524 -3.9953 2.0990 26 1 3.6462 -5.8687 2.1035 27 1 4.7337 -6.5773 0.0145 28 1 1.3579 -3.2745 -4.0456 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621778.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:17 Heat of formation + Delta-G solvation = -76.067321 kcal Electronic energy + Delta-G solvation = -16801.636709 eV Core-core repulsion = 13843.070524 eV Total energy + Delta-G solvation = -2958.566185 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.99042 -38.37500 -36.41868 -35.42469 -34.78325 -31.79449 -30.99051 -29.37507 -26.17608 -24.30524 -23.24373 -20.98314 -20.09932 -17.74219 -16.96042 -16.63139 -15.92248 -15.70809 -14.73495 -14.42031 -14.11781 -13.91492 -13.31613 -12.97145 -12.72872 -12.40946 -12.04458 -11.52791 -11.16966 -11.13385 -10.96999 -10.93121 -10.79704 -10.70508 -10.14256 -10.06307 -9.74101 -8.80857 -8.53403 -8.24281 -7.38502 -6.19017 -4.34229 1.32098 1.63835 2.23964 2.75667 3.20306 3.29173 3.36729 3.52110 3.97472 4.31996 5.01485 5.10900 5.26393 5.52740 5.66857 5.72317 5.92484 6.23677 6.27990 6.43937 6.75193 6.77235 6.97953 7.10573 7.42259 7.68963 7.90109 8.42463 8.50661 8.79494 8.93906 9.37938 10.80336 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.008380 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.949391 B = 3340.292356 C = 3831.270068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.234 3.766 10 H 0.054 0.946 11 N -0.848 5.848 12 C 0.021 3.979 13 C -0.109 4.109 14 C -0.092 4.092 15 C -0.138 4.138 16 C -0.003 4.003 17 Cl -0.075 7.075 18 C -0.101 4.101 19 C 0.543 3.457 20 O -0.485 6.485 21 O -0.511 6.511 22 H 0.266 0.734 23 H 0.314 0.686 24 H 0.360 0.640 25 H 0.140 0.860 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 -9.887 -0.474 10.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.124 3.876 10 H 0.072 0.928 11 N -0.379 5.379 12 C 0.020 3.980 13 C -0.127 4.127 14 C -0.111 4.111 15 C -0.157 4.157 16 C -0.030 4.030 17 Cl -0.046 7.046 18 C -0.104 4.104 19 C 0.384 3.616 20 O -0.371 6.371 21 O -0.322 6.322 22 H 0.076 0.924 23 H 0.124 0.876 24 H 0.178 0.822 25 H 0.157 0.843 26 H 0.148 0.852 27 H 0.150 0.850 28 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.470 -10.470 -0.626 11.401 hybrid contribution 0.828 2.251 -0.557 2.462 sum 5.298 -8.219 -1.183 9.850 Atomic orbital electron populations 1.69738 1.05861 1.27367 1.50252 1.24976 0.94954 0.99472 0.93928 0.86388 0.80406 0.82822 0.77623 1.19507 1.20741 1.20891 1.21730 0.93846 0.90269 1.52269 0.92146 1.18100 0.89019 0.87934 0.92539 0.92835 1.59547 1.18305 1.56356 1.03680 1.20599 0.93377 0.94141 0.89882 1.21096 0.97492 0.95347 0.98757 1.21239 0.95746 0.96802 0.97281 1.20744 1.02703 1.01463 0.90744 1.20731 0.97794 0.96426 0.88020 1.98350 1.80345 1.90560 1.35307 1.18672 1.01510 0.97882 0.92304 1.20513 0.76917 0.81167 0.82998 1.90890 1.49389 1.25227 1.71551 1.84654 1.50938 1.59874 1.36752 0.92365 0.87648 0.82250 0.84268 0.85177 0.85001 0.73608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.54 55.43 0.64 -23.58 15 2 C 0.07 1.87 5.38 -17.82 -0.10 1.77 15 3 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.54 -14.53 8.50 -34.44 -0.29 -14.82 15 8 H 0.06 1.70 7.74 -52.48 -0.41 1.30 15 9 C 0.23 5.70 2.44 -70.02 -0.17 5.52 15 10 H 0.05 1.46 7.48 -51.93 -0.39 1.07 15 11 N -0.85 -19.06 8.67 -6.66 -0.06 -19.12 15 12 C 0.02 0.45 5.06 -104.21 -0.53 -0.08 15 13 C -0.11 -1.91 9.24 -39.64 -0.37 -2.28 15 14 C -0.09 -1.33 10.04 -39.50 -0.40 -1.73 15 15 C -0.14 -2.03 9.82 -39.60 -0.39 -2.42 15 16 C 0.00 -0.05 6.35 -39.05 -0.25 -0.30 15 17 Cl -0.07 -1.18 28.04 -51.86 -1.45 -2.63 15 18 C -0.10 -2.09 5.75 -104.96 -0.60 -2.69 15 19 C 0.54 11.58 5.31 34.57 0.18 11.76 15 20 O -0.49 -11.63 17.89 -19.25 -0.34 -11.97 15 21 O -0.51 -9.17 13.44 -40.56 -0.55 -9.72 15 22 H 0.27 6.90 8.31 -40.82 -0.34 6.57 15 23 H 0.31 6.51 7.28 -39.29 -0.29 6.22 15 24 H 0.36 8.77 7.08 -39.29 -0.28 8.49 15 25 H 0.14 2.28 6.24 -52.49 -0.33 1.95 15 26 H 0.13 1.39 8.06 -52.48 -0.42 0.97 15 27 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 28 H 0.41 5.31 9.11 45.56 0.42 5.72 15 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -30.16 267.69 -6.91 -37.07 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -1.25 Total: 14.76 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -2.91 Total: -5.26 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 0.58 Total: -42.70 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.89 Total: -21.69 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.45 Total: -2.63 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.16 -6.91 -37.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621778.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.001 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds