Wall clock time and date at job start Mon Mar 30 2020 04:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99990 * 2 1 4 4 H 1.48507 * 109.46909 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47197 * 300.00079 * 3 2 1 6 6 H 1.48494 * 109.47237 * 60.00375 * 3 2 1 7 7 C 1.37878 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00017 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99879 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47368 * 60.00179 * 9 7 2 11 11 N 1.46902 * 109.47048 * 300.00129 * 9 7 2 12 12 C 1.50701 * 109.47004 * 180.02562 * 9 7 2 13 13 C 1.38135 * 120.48572 * 100.00189 * 12 9 7 14 14 N 1.31818 * 120.91134 * 179.97438 * 13 12 9 15 15 C 1.31916 * 122.03331 * 0.02562 * 14 13 12 16 16 Cl 1.73601 * 119.57060 * 180.02562 * 15 14 13 17 17 C 1.38305 * 120.86354 * 359.97438 * 15 14 13 18 18 C 1.39787 * 118.98540 * 359.97438 * 17 15 14 19 19 C 1.48151 * 120.90934 * 179.97438 * 18 17 15 20 20 N 1.34777 * 120.00454 * 0.02562 * 19 18 17 21 21 O 1.21522 * 119.99968 * 180.02562 * 19 18 17 22 22 H 0.97005 * 119.99777 * 359.97438 * 1 2 3 23 23 H 1.00902 * 110.99610 * 300.00152 * 11 9 7 24 24 H 1.00902 * 111.00109 * 63.95291 * 11 9 7 25 25 H 1.07988 * 119.54206 * 0.02562 * 13 12 9 26 26 H 1.07995 * 120.50718 * 179.72970 * 17 15 14 27 27 H 0.96995 * 119.99733 * 0.02562 * 20 19 18 28 28 H 0.97001 * 120.00337 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4069 -2.5772 1.1992 12 6 2.2303 -3.6446 -0.0005 13 6 2.5285 -4.3116 1.1718 14 7 3.3834 -5.3149 1.1813 15 6 3.9904 -5.7275 0.0852 16 17 5.1045 -7.0560 0.1711 17 6 3.7500 -5.1160 -1.1319 18 6 2.8494 -4.0484 -1.1874 19 6 2.5606 -3.3622 -2.4683 20 7 3.1691 -3.7656 -3.6012 21 8 1.7751 -2.4354 -2.4975 22 1 -0.4850 0.8401 0.0004 23 1 0.9652 -2.5259 2.0381 24 1 -0.3005 -1.8576 1.1911 25 1 2.0541 -4.0074 2.0929 26 1 4.2534 -5.4556 -2.0249 27 1 3.7958 -4.5056 -3.5780 28 1 2.9803 -3.3161 -4.4397 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238623374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:07 Heat of formation + Delta-G solvation = -28.877888 kcal Electronic energy + Delta-G solvation = -16705.966965 eV Core-core repulsion = 13781.739819 eV Total energy + Delta-G solvation = -2924.227146 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.74901 -39.78613 -37.73387 -36.74466 -34.91483 -33.76246 -33.02289 -31.01542 -28.03111 -25.98149 -25.29316 -22.32972 -21.92929 -19.25219 -18.59771 -18.34345 -17.27226 -16.85874 -16.52919 -16.10696 -15.88623 -15.73054 -15.08617 -14.75348 -14.70784 -14.34041 -13.31390 -13.24992 -12.84717 -12.73583 -12.53964 -12.32053 -11.97002 -11.86893 -11.28916 -10.93764 -10.75874 -10.55724 -10.27298 -9.76239 -9.18908 -8.07124 -6.25103 -0.33987 -0.03720 0.74608 1.34695 1.37753 1.46906 1.93204 2.38740 2.48670 2.77231 3.14400 3.43845 3.72070 3.77638 4.05274 4.17037 4.47835 4.63207 4.72911 5.02845 5.43206 5.65995 5.77913 5.99381 6.07147 6.48906 6.61093 6.72373 6.91640 7.13432 7.43703 7.45306 8.91166 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.007168 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.157104 B = 3905.160576 C = 4341.841094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.035 0.965 9 C 0.244 3.756 10 H 0.048 0.952 11 N -0.846 5.846 12 C -0.049 4.049 13 C 0.114 3.886 14 N -0.474 5.474 15 C 0.137 3.863 16 Cl -0.018 7.018 17 C -0.105 4.105 18 C -0.101 4.101 19 C 0.547 3.453 20 N -0.829 5.829 21 O -0.530 6.530 22 H 0.264 0.736 23 H 0.318 0.682 24 H 0.350 0.650 25 H 0.176 0.824 26 H 0.186 0.814 27 H 0.414 0.586 28 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 -11.243 -4.409 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.174 4.174 3 Si 0.777 3.223 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.053 0.947 9 C 0.133 3.867 10 H 0.066 0.934 11 N -0.376 5.376 12 C -0.052 4.052 13 C -0.043 4.043 14 N -0.185 5.185 15 C -0.027 4.027 16 Cl 0.011 6.989 17 C -0.126 4.126 18 C -0.112 4.112 19 C 0.331 3.669 20 N -0.396 5.396 21 O -0.405 6.405 22 H 0.073 0.927 23 H 0.128 0.872 24 H 0.165 0.835 25 H 0.193 0.807 26 H 0.203 0.797 27 H 0.247 0.753 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 8.778 -11.828 -3.755 15.200 hybrid contribution 0.711 2.204 -0.835 2.462 sum 9.489 -9.624 -4.590 14.273 Atomic orbital electron populations 1.69827 1.06690 1.27356 1.51530 1.25542 0.95638 1.01715 0.94458 0.85634 0.78777 0.80348 0.77515 1.19987 1.21268 1.20072 1.21570 0.92159 0.91805 1.50650 0.94707 1.17963 0.89353 0.87792 0.91553 0.93407 1.59634 1.18221 1.55606 1.04151 1.21693 0.95114 0.95404 0.93038 1.22542 0.93140 0.90038 0.98600 1.66884 1.07315 1.13391 1.30893 1.21639 0.96519 0.94142 0.90384 1.98378 1.58489 1.43501 1.98576 1.22121 0.97289 0.94253 0.98968 1.20264 0.99112 0.97396 0.94467 1.18248 0.81104 0.82903 0.84635 1.43426 1.47805 1.39123 1.09273 1.91007 1.34953 1.28589 1.85951 0.92703 0.87182 0.83519 0.80723 0.79661 0.75343 0.75371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.91 11.54 21.45 0.25 -51.66 15 2 C 0.03 1.44 5.38 84.65 0.46 1.90 15 3 Si 0.95 44.41 29.54 68.60 2.03 46.43 15 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 15 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 15 7 C -0.52 -28.47 7.53 25.60 0.19 -28.28 15 8 H 0.03 1.94 7.74 -2.91 -0.02 1.92 15 9 C 0.24 12.27 2.24 43.42 0.10 12.37 15 10 H 0.05 2.82 6.04 -2.39 -0.01 2.80 15 11 N -0.85 -39.84 8.68 -174.95 -1.52 -41.36 15 12 C -0.05 -2.05 5.07 -19.50 -0.10 -2.15 15 13 C 0.11 4.31 10.42 84.67 0.88 5.19 15 14 N -0.47 -16.32 10.31 -186.86 -1.93 -18.25 15 15 C 0.14 4.02 7.27 84.70 0.62 4.63 15 16 Cl -0.02 -0.41 29.10 -2.72 -0.08 -0.49 15 17 C -0.11 -2.81 9.38 22.66 0.21 -2.60 15 18 C -0.10 -3.59 5.91 -19.89 -0.12 -3.71 15 19 C 0.55 19.75 8.03 86.88 0.70 20.45 15 20 N -0.83 -18.31 8.83 -175.39 -1.55 -19.86 15 21 O -0.53 -25.55 13.44 -3.79 -0.05 -25.60 15 22 H 0.26 14.31 8.31 -92.70 -0.77 13.54 15 23 H 0.32 13.72 7.31 -89.69 -0.66 13.07 15 24 H 0.35 17.97 7.08 -89.69 -0.63 17.34 15 25 H 0.18 6.29 6.26 -2.92 -0.02 6.27 15 26 H 0.19 3.00 6.54 -2.91 -0.02 2.98 15 27 H 0.41 5.64 6.97 -92.71 -0.65 4.99 15 28 H 0.41 7.94 8.93 -92.71 -0.83 7.11 15 Total: -1.00 -67.94 259.16 -1.40 -69.34 By element: Atomic # 1 Polarization: 35.13 SS G_CDS: -1.49 Total: 33.65 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 2.94 Total: 7.80 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -4.75 Total: -131.12 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -0.08 Total: -0.49 kcal Total: -67.94 -1.40 -69.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.463 kcal (2) G-P(sol) polarization free energy of solvation -67.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds