Wall clock time and date at job start Mon Mar 30 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48493 * 109.47171 * 240.00505 * 3 2 1 5 5 H 1.48501 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47015 * 119.99981 * 3 2 1 7 7 C 1.39862 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00623 * 162.17583 * 7 2 1 9 9 C 1.41202 * 119.99699 * 342.17516 * 7 2 1 10 10 C 1.40871 * 120.38854 * 155.34362 * 9 7 2 11 11 C 1.36042 * 120.03617 * 180.60073 * 10 9 7 12 12 C 1.40189 * 121.17048 * 359.83062 * 11 10 9 13 13 C 1.39404 * 119.23893 * 359.38960 * 12 11 10 14 14 C 1.38459 * 120.24267 * 0.97264 * 13 12 11 15 15 N 1.40858 * 122.59783 * 181.84538 * 13 12 11 16 16 S 1.66511 * 117.68003 * 344.46833 * 15 13 12 17 17 O 1.42104 * 104.79230 * 282.81508 * 16 15 13 18 18 O 1.42106 * 104.78967 * 153.93870 * 16 15 13 19 19 C 1.82352 * 101.50762 * 38.37693 * 16 15 13 20 20 O 1.35480 * 116.30545 * 179.28646 * 12 11 10 21 21 H 0.97000 * 120.00184 * 359.97438 * 1 2 3 22 22 H 1.08007 * 119.98659 * 0.57173 * 10 9 7 23 23 H 1.07995 * 119.41734 * 179.80257 * 11 10 9 24 24 H 1.07995 * 119.96102 * 179.40284 * 14 13 12 25 25 H 0.96996 * 121.23796 * 164.40983 * 15 13 12 26 26 H 1.09003 * 109.88589 * 66.09339 * 19 16 15 27 27 H 1.09006 * 109.88221 * 187.17343 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2112 -0.0005 8 1 3.0494 -1.2336 -0.2868 9 6 1.3531 -2.4049 0.3733 10 6 1.8216 -3.6500 -0.0900 11 6 1.1776 -4.7947 0.2647 12 6 0.0471 -4.7643 1.0932 13 6 -0.4147 -3.5385 1.5703 14 6 0.2257 -2.3645 1.2117 15 7 -1.5198 -3.4291 2.4368 16 16 -2.5218 -4.7510 2.5832 17 8 -3.3155 -4.7369 1.4046 18 8 -3.1064 -4.6220 3.8720 19 6 -1.3215 -6.1232 2.5454 20 8 -0.5254 -5.9602 1.3718 21 1 -0.4850 0.8400 0.0004 22 1 2.6922 -3.6960 -0.7275 23 1 1.5434 -5.7435 -0.0988 24 1 -0.1417 -1.4167 1.5761 25 1 -1.6918 -2.6131 2.9322 26 1 -0.6877 -6.0860 3.4315 27 1 -1.8492 -7.0763 2.5059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258010483.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:47 Heat of formation + Delta-G solvation = -72.759246 kcal Electronic energy + Delta-G solvation = -16806.992434 eV Core-core repulsion = 13850.613404 eV Total energy + Delta-G solvation = -2956.379029 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34279 -36.98388 -36.70834 -35.80051 -34.52157 -33.38011 -29.75338 -28.13089 -27.57879 -25.01802 -21.76558 -21.21112 -19.03170 -18.22425 -17.44453 -17.31531 -16.31641 -15.70697 -15.40873 -15.30253 -14.90863 -14.12974 -13.43177 -12.98928 -12.64870 -12.53042 -12.18943 -11.96603 -11.85843 -11.73001 -11.63461 -11.24042 -11.22371 -10.82850 -10.34092 -10.01149 -9.92443 -9.68807 -9.19580 -7.44659 -7.18365 -6.91442 -4.52649 0.26416 2.43331 2.67151 2.75799 2.98465 2.99336 3.04199 3.45529 3.77840 3.79810 4.36757 4.62218 4.81871 5.16579 5.26744 5.42389 6.06573 6.30851 6.57957 6.76317 6.89985 7.04057 7.22161 7.44536 7.57182 7.75359 7.91245 8.12989 8.39740 8.66262 8.69886 9.99111 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.007006 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.635512 B = 3995.625529 C = 4590.762005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.450 4.450 8 H 0.084 0.916 9 C 0.119 3.881 10 C -0.209 4.209 11 C -0.065 4.065 12 C -0.095 4.095 13 C 0.136 3.864 14 C -0.180 4.180 15 N -1.041 6.041 16 S 2.562 3.438 17 O -0.934 6.934 18 O -0.962 6.962 19 C -0.406 4.406 20 O -0.281 6.281 21 H 0.285 0.715 22 H 0.107 0.893 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.424 0.576 26 H 0.116 0.884 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.153 -4.678 4.411 6.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.115 3.885 10 C -0.229 4.229 11 C -0.084 4.084 12 C -0.141 4.141 13 C 0.040 3.960 14 C -0.203 4.203 15 N -0.793 5.793 16 S 2.654 3.346 17 O -0.924 6.924 18 O -0.951 6.951 19 C -0.574 4.574 20 O -0.197 6.197 21 H 0.096 0.904 22 H 0.125 0.875 23 H 0.126 0.874 24 H 0.149 0.851 25 H 0.260 0.740 26 H 0.134 0.866 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.365 -4.845 4.325 6.636 hybrid contribution 0.701 1.074 0.418 1.349 sum -0.664 -3.771 4.743 6.096 Atomic orbital electron populations 1.69835 1.07646 1.29852 1.33332 1.25984 0.94791 1.01641 0.92139 0.86292 0.80120 0.79825 0.80136 1.18816 1.20242 1.18684 1.19540 0.98319 0.91001 1.39026 0.89805 1.17449 0.90485 0.92342 0.88216 1.20583 1.03493 0.92188 1.06612 1.19748 0.92061 0.98187 0.98385 1.18163 1.02028 0.80453 1.13469 1.17500 0.89395 0.94143 0.94921 1.20975 1.00978 0.94714 1.03681 1.53268 1.40541 1.30369 1.55109 1.06731 0.75682 0.77468 0.74760 1.93656 1.65161 1.84924 1.48658 1.93601 1.75679 1.84988 1.40878 1.31557 1.10497 1.18958 0.96419 1.85879 1.65488 1.31890 1.36476 0.90392 0.87498 0.87435 0.85149 0.73980 0.86632 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.03 10.98 55.54 0.61 -18.42 15 2 C 0.07 1.72 5.14 -17.35 -0.09 1.63 15 3 Si 0.91 17.36 29.59 -169.99 -5.03 12.32 15 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 15 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 7 C -0.45 -10.94 9.05 -37.85 -0.34 -11.28 15 8 H 0.08 1.92 7.91 -52.49 -0.41 1.51 15 9 C 0.12 2.93 5.57 -106.90 -0.59 2.33 15 10 C -0.21 -4.67 9.73 -39.37 -0.38 -5.06 15 11 C -0.06 -1.37 9.77 -39.64 -0.39 -1.76 15 12 C -0.10 -2.06 6.50 -38.42 -0.25 -2.31 15 13 C 0.14 3.00 6.49 -83.19 -0.54 2.46 15 14 C -0.18 -4.34 8.44 -38.63 -0.33 -4.66 15 15 N -1.04 -19.40 5.96 32.66 0.19 -19.21 15 16 S 2.56 42.91 6.12 -107.50 -0.66 42.25 15 17 O -0.93 -19.21 18.12 -57.47 -1.04 -20.26 15 18 O -0.96 -16.78 18.12 -57.47 -1.04 -17.82 15 19 C -0.41 -5.88 7.84 101.05 0.79 -5.09 15 20 O -0.28 -5.39 10.01 -18.13 -0.18 -5.57 15 21 H 0.29 6.33 8.30 -40.82 -0.34 6.00 15 22 H 0.11 2.17 8.06 -52.48 -0.42 1.75 15 23 H 0.11 2.00 8.06 -52.49 -0.42 1.58 15 24 H 0.13 3.20 6.17 -52.49 -0.32 2.87 15 25 H 0.42 7.05 8.84 -36.36 -0.32 6.72 15 26 H 0.12 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.15 1.58 8.14 -51.93 -0.42 1.16 15 LS Contribution 252.36 15.07 3.80 3.80 Total: -1.00 -30.60 252.36 -7.35 -37.95 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -1.89 Total: 8.68 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.12 Total: -23.73 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.80 Total: -37.63 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -2.26 Total: -43.65 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 42.91 SS G_CDS: -0.66 Total: 42.25 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.60 -7.35 -37.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258010483.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.805 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds