Wall clock time and date at job start Mon Mar 30 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30891 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48493 * 109.47171 * 240.00505 * 3 2 1 5 5 H 1.48501 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47015 * 119.99981 * 3 2 1 7 7 C 1.39862 * 120.00343 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00623 * 162.17583 * 7 2 1 9 9 C 1.41202 * 119.99699 * 342.17516 * 7 2 1 10 10 C 1.40871 * 120.38854 * 155.34362 * 9 7 2 11 11 C 1.36042 * 120.03617 * 180.60073 * 10 9 7 12 12 C 1.40189 * 121.17048 * 359.83062 * 11 10 9 13 13 C 1.39404 * 119.23893 * 359.38960 * 12 11 10 14 14 C 1.38459 * 120.24267 * 0.97264 * 13 12 11 15 15 N 1.40858 * 122.59783 * 181.84538 * 13 12 11 16 16 S 1.66511 * 117.68003 * 344.46833 * 15 13 12 17 17 O 1.42104 * 104.79230 * 282.81508 * 16 15 13 18 18 O 1.42106 * 104.78967 * 153.93870 * 16 15 13 19 19 C 1.82352 * 101.50762 * 38.37693 * 16 15 13 20 20 O 1.35480 * 116.30545 * 179.28646 * 12 11 10 21 21 H 0.97000 * 120.00184 * 359.97438 * 1 2 3 22 22 H 1.08007 * 119.98659 * 0.57173 * 10 9 7 23 23 H 1.07995 * 119.41734 * 179.80257 * 11 10 9 24 24 H 1.07995 * 119.96102 * 179.40284 * 14 13 12 25 25 H 0.96996 * 121.23796 * 164.40983 * 15 13 12 26 26 H 1.09003 * 109.88589 * 66.09339 * 19 16 15 27 27 H 1.09006 * 109.88221 * 187.17343 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0083 -1.2112 -0.0005 8 1 3.0494 -1.2336 -0.2868 9 6 1.3531 -2.4049 0.3733 10 6 1.8216 -3.6500 -0.0900 11 6 1.1776 -4.7947 0.2647 12 6 0.0471 -4.7643 1.0932 13 6 -0.4147 -3.5385 1.5703 14 6 0.2257 -2.3645 1.2117 15 7 -1.5198 -3.4291 2.4368 16 16 -2.5218 -4.7510 2.5832 17 8 -3.3155 -4.7369 1.4046 18 8 -3.1064 -4.6220 3.8720 19 6 -1.3215 -6.1232 2.5454 20 8 -0.5254 -5.9602 1.3718 21 1 -0.4850 0.8400 0.0004 22 1 2.6922 -3.6960 -0.7275 23 1 1.5434 -5.7435 -0.0988 24 1 -0.1417 -1.4167 1.5761 25 1 -1.6918 -2.6131 2.9322 26 1 -0.6877 -6.0860 3.4315 27 1 -1.8492 -7.0763 2.5059 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258010483.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:47 Heat of formation + Delta-G solvation = -96.181855 kcal Electronic energy + Delta-G solvation = -16808.008114 eV Core-core repulsion = 13850.613404 eV Total energy + Delta-G solvation = -2957.394710 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93345 -38.51034 -38.24101 -37.25544 -36.12401 -35.07083 -31.41990 -29.79162 -28.99455 -26.71136 -23.46055 -22.83471 -20.51789 -19.74519 -19.08340 -18.81140 -17.80885 -17.24300 -16.93897 -16.79281 -16.39096 -15.65726 -15.08547 -14.57397 -14.24026 -14.11519 -13.71999 -13.46880 -13.35466 -13.30050 -13.13595 -12.82621 -12.75034 -12.36748 -11.93765 -11.70803 -11.57137 -11.19788 -10.89440 -9.17669 -8.87901 -8.62213 -6.33588 -1.08402 0.76672 0.99018 1.26013 1.42245 1.51171 1.54667 2.02181 2.21150 2.44676 2.66644 3.26873 3.58572 3.66116 3.76978 4.10653 4.40976 4.71234 4.91214 5.05969 5.21675 5.32332 5.55219 5.72337 5.94274 6.00432 6.18465 6.44374 6.65908 6.88702 6.95017 8.29047 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.033499 B = 0.007006 C = 0.006098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.635512 B = 3995.625529 C = 4590.762005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.483 4.483 8 H 0.088 0.912 9 C 0.089 3.911 10 C -0.217 4.217 11 C -0.069 4.069 12 C -0.094 4.094 13 C 0.132 3.868 14 C -0.205 4.205 15 N -1.044 6.044 16 S 2.573 3.427 17 O -0.977 6.977 18 O -0.967 6.967 19 C -0.393 4.393 20 O -0.288 6.288 21 H 0.289 0.711 22 H 0.121 0.879 23 H 0.137 0.863 24 H 0.116 0.884 25 H 0.429 0.571 26 H 0.149 0.851 27 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.343 -5.961 5.059 7.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.512 4.512 8 H 0.106 0.894 9 C 0.085 3.915 10 C -0.237 4.237 11 C -0.088 4.088 12 C -0.140 4.140 13 C 0.036 3.964 14 C -0.229 4.229 15 N -0.794 5.794 16 S 2.668 3.332 17 O -0.967 6.967 18 O -0.957 6.957 19 C -0.564 4.564 20 O -0.204 6.204 21 H 0.100 0.900 22 H 0.139 0.861 23 H 0.155 0.845 24 H 0.134 0.866 25 H 0.266 0.734 26 H 0.167 0.833 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.891 -6.115 4.981 7.937 hybrid contribution 0.472 1.258 0.291 1.375 sum -0.419 -4.857 5.272 7.180 Atomic orbital electron populations 1.69903 1.09120 1.30862 1.34588 1.26795 0.95397 1.04700 0.91154 0.85222 0.78696 0.75461 0.80210 1.18208 1.19773 1.18301 1.19820 0.98763 0.91968 1.40609 0.89415 1.17833 0.91233 0.93543 0.88891 1.20809 1.04177 0.91948 1.06785 1.20100 0.91851 0.99050 0.97759 1.18334 1.01809 0.81072 1.12827 1.17582 0.89823 0.93922 0.95106 1.20955 1.01989 0.95029 1.04930 1.53328 1.39661 1.31795 1.54638 1.06381 0.75557 0.77591 0.73630 1.93606 1.67080 1.85692 1.50276 1.93591 1.76203 1.85289 1.40664 1.31789 1.09183 1.19228 0.96198 1.85831 1.65542 1.30148 1.38852 0.89993 0.86056 0.84478 0.86607 0.73444 0.83295 0.78051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.11 10.98 21.81 0.24 -40.87 15 2 C 0.04 1.68 5.14 85.23 0.44 2.12 15 3 Si 0.98 35.88 29.59 68.60 2.03 37.91 15 4 H -0.26 -9.09 7.11 99.48 0.71 -8.38 15 5 H -0.27 -9.64 7.11 99.48 0.71 -8.93 15 6 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 7 C -0.48 -24.03 9.05 23.39 0.21 -23.82 15 8 H 0.09 4.10 7.91 -2.91 -0.02 4.08 15 9 C 0.09 4.45 5.57 -21.34 -0.12 4.33 15 10 C -0.22 -9.68 9.73 22.40 0.22 -9.46 15 11 C -0.07 -2.81 9.77 22.23 0.22 -2.59 15 12 C -0.09 -3.91 6.50 23.03 0.15 -3.76 15 13 C 0.13 5.81 6.49 38.02 0.25 6.06 15 14 C -0.21 -10.17 8.44 22.89 0.19 -9.97 15 15 N -1.04 -38.47 5.96 -50.59 -0.30 -38.78 15 16 S 2.57 81.56 6.12 -56.49 -0.35 81.22 15 17 O -0.98 -39.39 18.12 -127.72 -2.31 -41.70 15 18 O -0.97 -31.88 18.12 -127.72 -2.31 -34.19 15 19 C -0.39 -9.69 7.84 113.37 0.89 -8.80 15 20 O -0.29 -10.04 10.01 -87.80 -0.88 -10.92 15 21 H 0.29 13.25 8.30 -92.71 -0.77 12.48 15 22 H 0.12 4.88 8.06 -2.91 -0.02 4.86 15 23 H 0.14 4.70 8.06 -2.91 -0.02 4.68 15 24 H 0.12 5.95 6.17 -2.91 -0.02 5.94 15 25 H 0.43 14.44 8.84 -95.55 -0.84 13.60 15 26 H 0.15 2.90 8.14 -2.39 -0.02 2.88 15 27 H 0.20 3.02 8.14 -2.38 -0.02 3.00 15 Total: -1.00 -66.46 252.36 -1.06 -67.52 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.38 Total: 25.70 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 2.44 Total: -45.89 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -0.06 Total: -79.65 kcal Atomic # 8 Polarization: -81.31 SS G_CDS: -5.51 Total: -86.81 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Atomic # 16 Polarization: 81.56 SS G_CDS: -0.35 Total: 81.22 kcal Total: -66.46 -1.06 -67.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258010483.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.664 kcal (2) G-P(sol) polarization free energy of solvation -66.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds