Wall clock time and date at job start Mon Mar 30 2020 05:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.38733 * 119.99732 * 2 1 4 4 C 1.38754 * 120.29437 * 85.29756 * 3 2 1 5 5 C 1.38167 * 120.02262 * 180.27300 * 4 3 2 6 6 C 1.38899 * 120.62806 * 359.72322 * 5 4 3 7 7 C 1.36450 * 120.59826 * 359.96963 * 6 5 4 8 8 C 1.40732 * 119.94840 * 0.02944 * 7 6 5 9 9 C 1.41046 * 120.30467 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00264 * 205.30227 * 9 8 7 11 11 C 1.39925 * 119.99894 * 25.30349 * 9 8 7 12 12 N 1.30876 * 120.00397 * 26.51322 * 11 9 8 13 13 Si 1.86802 * 119.99975 * 206.51147 * 11 9 8 14 14 H 1.48500 * 109.47114 * 179.97438 * 13 11 9 15 15 H 1.48497 * 109.47311 * 300.00169 * 13 11 9 16 16 H 1.48501 * 109.46834 * 60.00275 * 13 11 9 17 17 S 1.65600 * 120.00066 * 179.97438 * 2 1 3 18 18 C 1.81405 * 104.44916 * 270.00126 * 17 2 1 19 19 O 1.42099 * 104.27707 * 26.07210 * 17 2 1 20 20 O 1.42104 * 104.27671 * 153.93176 * 17 2 1 21 21 H 1.08999 * 109.46369 * 90.00099 * 1 2 3 22 22 H 1.09002 * 109.46800 * 210.00086 * 1 2 3 23 23 H 1.08997 * 109.47193 * 330.00120 * 1 2 3 24 24 H 1.07997 * 119.98796 * 359.97438 * 4 3 2 25 25 H 1.07995 * 119.68637 * 179.74021 * 5 4 3 26 26 H 1.07997 * 119.69982 * 179.97438 * 6 5 4 27 27 H 1.07995 * 120.02865 * 180.02562 * 7 6 5 28 28 H 0.97005 * 119.99492 * 5.89504 * 12 11 9 29 29 H 1.09006 * 109.46488 * 60.00280 * 18 17 2 30 30 H 1.08999 * 109.47050 * 179.97438 * 18 17 2 31 31 H 1.09000 * 109.47282 * 300.00299 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1587 1.2015 0.0000 4 6 2.4236 1.8568 1.1940 5 6 3.1099 3.0559 1.1870 6 6 3.5459 3.6147 -0.0075 7 6 3.3048 2.9890 -1.1958 8 6 2.6080 1.7665 -1.2175 9 6 2.3542 1.1135 -2.4416 10 1 1.5152 0.4392 -2.5302 11 6 3.1894 1.3393 -3.5413 12 7 4.4347 1.6963 -3.3549 13 14 2.5271 1.1312 -5.2755 14 1 3.6030 1.4276 -6.2552 15 1 2.0581 -0.2653 -5.4621 16 1 1.3935 2.0667 -5.4880 17 16 2.2931 -1.4341 0.0006 18 6 2.5194 -1.8254 1.7575 19 8 1.3971 -2.3564 -0.6042 20 8 3.5396 -1.1193 -0.6047 21 1 -0.3632 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5138 24 1 2.0889 1.4318 2.1288 25 1 3.3094 3.5634 2.1192 26 1 4.0807 4.5529 0.0045 27 1 3.6484 3.4316 -2.1191 28 1 4.8029 1.7215 -2.4578 29 1 1.5450 -1.9178 2.2375 30 1 3.0619 -2.7659 1.8533 31 1 3.0866 -1.0277 2.2372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258402139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:19 Heat of formation + Delta-G solvation = -47.829687 kcal Electronic energy + Delta-G solvation = -17633.931494 eV Core-core repulsion = 14814.466586 eV Total energy + Delta-G solvation = -2819.464908 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.23716 -36.40223 -35.18733 -34.85863 -33.85332 -29.48340 -29.01980 -28.92680 -25.77156 -24.63869 -21.04905 -20.98140 -18.41380 -17.78002 -16.94890 -15.88954 -15.87744 -14.85830 -14.42691 -14.36245 -13.90025 -13.15848 -13.00567 -12.79713 -12.66241 -12.38369 -12.20787 -12.01112 -11.47269 -11.35935 -11.27515 -11.03171 -10.88315 -10.63598 -10.41428 -10.37790 -10.04115 -9.60593 -9.01856 -8.26456 -7.71100 -7.59257 -7.18272 -4.45056 0.84090 2.65113 2.79078 3.18650 3.29836 3.34501 3.37880 4.03397 4.50399 4.55453 4.69011 5.04453 5.28888 5.42546 5.62349 5.86051 5.96212 6.01956 6.18750 6.27793 6.39971 6.63440 6.85824 7.00174 7.15945 7.39908 7.70618 7.75766 7.85951 7.93188 8.14471 8.29653 8.75608 8.85702 10.02832 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.018825 B = 0.011693 C = 0.008586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.028840 B = 2394.028381 C = 3260.433808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.913 5.913 3 C -0.011 4.011 4 C -0.070 4.070 5 C -0.259 4.259 6 C -0.077 4.077 7 C -0.207 4.207 8 C 0.114 3.886 9 C -0.485 4.485 10 H 0.077 0.923 11 C 0.039 3.961 12 N -0.776 5.776 13 Si 1.059 2.941 14 H -0.272 1.272 15 H -0.273 1.273 16 H -0.273 1.273 17 S 2.593 3.407 18 C -0.685 4.685 19 O -0.974 6.974 20 O -0.926 6.926 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.305 0.695 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 -2.645 6.250 8.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.744 5.744 3 C -0.107 4.107 4 C -0.091 4.091 5 C -0.279 4.279 6 C -0.096 4.096 7 C -0.227 4.227 8 C 0.108 3.892 9 C -0.513 4.513 10 H 0.095 0.905 11 C -0.185 4.185 12 N -0.398 5.398 13 Si 0.883 3.117 14 H -0.197 1.197 15 H -0.199 1.199 16 H -0.198 1.198 17 S 2.687 3.313 18 C -0.832 4.832 19 O -0.964 6.964 20 O -0.916 6.916 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.108 0.892 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.700 -3.064 3.936 6.211 hybrid contribution -0.489 -0.020 2.576 2.623 sum -4.189 -3.084 6.513 8.335 Atomic orbital electron populations 1.21407 0.79780 1.01187 1.01889 1.53999 1.12784 1.19069 1.88573 1.16846 1.11272 0.90026 0.92555 1.20766 0.97709 0.95214 0.95398 1.20113 1.11666 0.99637 0.96479 1.20404 0.98133 0.97885 0.93218 1.20879 1.08045 0.96854 0.96905 1.17729 0.89154 0.90427 0.91895 1.20499 1.12116 1.23222 0.95413 0.90450 1.27056 0.93585 0.91656 1.06249 1.70423 1.12809 1.26854 1.29743 0.83729 0.76608 0.78082 0.73330 1.19652 1.19853 1.19836 1.05930 0.74784 0.73536 0.77020 1.30713 1.10619 1.11180 1.30669 1.93521 1.65373 1.63955 1.73588 1.93636 1.43926 1.82032 1.71973 0.92708 0.92509 0.91659 0.89134 0.89113 0.89151 0.87485 0.88131 0.86403 0.86509 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.18 59.85 0.61 2.33 16 2 N -0.91 -18.36 2.32 -64.95 -0.15 -18.51 16 3 C -0.01 -0.26 4.51 -83.29 -0.38 -0.64 16 4 C -0.07 -1.45 9.96 -39.42 -0.39 -1.84 16 5 C -0.26 -5.42 10.03 -39.36 -0.40 -5.82 16 6 C -0.08 -1.72 9.97 -39.98 -0.40 -2.12 16 7 C -0.21 -5.14 7.93 -39.28 -0.31 -5.46 16 8 C 0.11 2.93 5.06 -106.63 -0.54 2.39 16 9 C -0.48 -12.87 8.16 -37.89 -0.31 -13.18 16 10 H 0.08 2.04 7.66 -52.48 -0.40 1.64 16 11 C 0.04 1.01 4.91 -17.33 -0.09 0.92 16 12 N -0.78 -20.92 12.32 55.55 0.68 -20.23 16 13 Si 1.06 22.15 30.01 -169.99 -5.10 17.04 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 S 2.59 50.62 5.99 -107.50 -0.64 49.98 16 18 C -0.68 -9.45 10.99 101.05 1.11 -8.33 16 19 O -0.97 -20.54 17.09 -57.54 -0.98 -21.52 16 20 O -0.93 -22.41 16.58 -57.54 -0.95 -23.37 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 23 H 0.06 0.99 8.05 -51.93 -0.42 0.58 16 24 H 0.09 1.59 8.06 -52.49 -0.42 1.17 16 25 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 26 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 27 H 0.11 2.73 6.52 -52.49 -0.34 2.39 16 28 H 0.30 8.50 6.78 -40.82 -0.28 8.22 16 29 H 0.12 1.34 8.14 -51.92 -0.42 0.92 16 30 H 0.12 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.12 1.68 8.14 -51.92 -0.42 1.26 16 LS Contribution 280.86 15.07 4.23 4.23 Total: -1.00 -31.24 280.86 -7.60 -38.85 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -3.60 Total: 5.28 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -1.09 Total: -31.75 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.53 Total: -38.75 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.94 Total: -44.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.10 Total: 17.04 kcal Atomic # 16 Polarization: 50.62 SS G_CDS: -0.64 Total: 49.98 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.24 -7.60 -38.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258402139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.985 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds