Wall clock time and date at job start Mon Mar 30 2020 05:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.39688 * 120.00098 * 2 1 4 4 C 1.39335 * 119.95008 * 154.72582 * 3 2 1 5 5 C 1.38482 * 120.41996 * 179.72342 * 4 3 2 6 6 C 1.37691 * 120.32345 * 0.55085 * 5 4 3 7 7 C 1.40738 * 119.89382 * 359.72860 * 6 5 4 8 8 C 1.41413 * 120.20945 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00215 * 154.96075 * 8 7 6 10 10 C 1.39933 * 119.99702 * 334.96806 * 8 7 6 11 11 N 1.30827 * 120.00187 * 342.55027 * 10 8 7 12 12 Si 1.86803 * 119.99776 * 162.54877 * 10 8 7 13 13 H 1.48493 * 109.47158 * 60.00240 * 12 10 8 14 14 H 1.48504 * 109.46770 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47346 * 299.99943 * 12 10 8 16 16 C 1.38277 * 119.95056 * 335.00168 * 3 2 1 17 17 S 1.65599 * 120.00057 * 180.02562 * 2 1 3 18 18 C 1.81405 * 104.44701 * 269.99794 * 17 2 1 19 19 O 1.42095 * 104.28021 * 153.92892 * 17 2 1 20 20 O 1.42096 * 104.27691 * 26.06537 * 17 2 1 21 21 H 1.09008 * 109.47257 * 270.00343 * 1 2 3 22 22 H 1.09003 * 109.47153 * 29.99828 * 1 2 3 23 23 H 1.08993 * 109.47330 * 150.00248 * 1 2 3 24 24 H 1.07996 * 119.79005 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.83651 * 180.28506 * 5 4 3 26 26 H 1.08001 * 120.04991 * 179.74917 * 6 5 4 27 27 H 0.96998 * 120.00281 * 180.02562 * 11 10 8 28 28 H 1.08003 * 120.16279 * 359.97438 * 16 3 2 29 29 H 1.09000 * 109.47333 * 300.00170 * 18 17 2 30 30 H 1.09005 * 109.47271 * 59.99679 * 18 17 2 31 31 H 1.08997 * 109.46902 * 179.97438 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 3.4567 1.2663 0.5154 5 6 4.1601 2.4591 0.5151 6 6 3.5843 3.6056 0.0152 7 6 2.2766 3.5651 -0.5034 8 6 1.6789 4.7384 -1.0190 9 1 0.8929 4.6650 -1.7561 10 6 2.1060 5.9945 -0.5742 11 7 2.7917 6.0973 0.5352 12 14 1.6970 7.5247 -1.5647 13 1 0.2227 7.6647 -1.6731 14 1 2.2585 8.7193 -0.8844 15 1 2.2843 7.4065 -2.9235 16 6 1.5682 2.3505 -0.5063 17 16 2.2930 -1.4341 -0.0006 18 6 2.5193 -1.8268 1.7559 19 8 3.5394 -1.1189 -0.6057 20 8 1.3969 -2.3558 -0.6061 21 1 -0.3634 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8899 -0.5138 24 1 3.9152 0.3731 0.9133 25 1 5.1637 2.4912 0.9128 26 1 4.1354 4.5344 0.0208 27 1 3.0874 6.9681 0.8437 28 1 0.5643 2.3087 -0.9024 29 1 3.0866 -1.0296 2.2363 30 1 1.5451 -1.9196 2.2360 31 1 3.0618 -2.7674 1.8509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258576916.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:21 Heat of formation + Delta-G solvation = -62.893869 kcal Electronic energy + Delta-G solvation = -16952.260821 eV Core-core repulsion = 14132.142681 eV Total energy + Delta-G solvation = -2820.118140 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.94228 -38.26646 -37.14358 -36.88781 -35.03335 -31.85192 -30.36280 -30.20691 -27.76173 -26.52307 -23.05525 -22.29646 -20.33140 -19.27918 -18.12535 -17.68973 -17.44613 -16.92600 -16.32006 -16.02808 -15.28811 -14.90364 -14.73219 -14.29145 -14.06247 -13.94225 -13.52514 -13.45580 -13.33373 -13.22065 -13.04069 -12.74930 -12.59679 -12.40591 -12.11649 -11.99137 -11.68750 -11.39363 -11.12095 -10.70169 -9.39432 -8.65481 -8.58383 -6.34887 -0.76441 0.99171 1.11481 1.40690 1.51189 1.54220 1.57388 2.22796 2.71915 2.92349 3.14849 3.66724 3.81905 4.06946 4.12057 4.49869 4.52411 4.61672 4.75464 4.88294 4.92759 5.04848 5.13611 5.17461 5.32453 5.51034 5.81884 5.97318 6.11855 6.15168 6.40401 6.72042 6.96045 7.04078 8.34983 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.043515 B = 0.005783 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.307579 B = 4840.217326 C = 5172.245287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.945 5.945 3 C 0.191 3.809 4 C -0.273 4.273 5 C -0.083 4.083 6 C -0.207 4.207 7 C 0.099 3.901 8 C -0.499 4.499 9 H 0.076 0.924 10 C 0.038 3.962 11 N -0.821 5.821 12 Si 0.981 3.019 13 H -0.259 1.259 14 H -0.267 1.267 15 H -0.264 1.264 16 C -0.267 4.267 17 S 2.603 3.397 18 C -0.646 4.646 19 O -0.983 6.983 20 O -0.984 6.984 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.289 0.711 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.155 0.845 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.560 -9.382 4.236 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.771 5.771 3 C 0.096 3.904 4 C -0.296 4.296 5 C -0.102 4.102 6 C -0.227 4.227 7 C 0.096 3.904 8 C -0.528 4.528 9 H 0.094 0.906 10 C -0.177 4.177 11 N -0.446 5.446 12 Si 0.802 3.198 13 H -0.183 1.183 14 H -0.191 1.191 15 H -0.188 1.188 16 C -0.290 4.290 17 S 2.702 3.298 18 C -0.800 4.800 19 O -0.974 6.974 20 O -0.974 6.974 21 H 0.102 0.898 22 H 0.094 0.906 23 H 0.113 0.887 24 H 0.138 0.862 25 H 0.135 0.865 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.125 0.875 29 H 0.158 0.842 30 H 0.173 0.827 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -2.265 -9.771 3.616 10.662 hybrid contribution -0.167 1.017 0.190 1.048 sum -2.432 -8.753 3.806 9.850 Atomic orbital electron populations 1.21940 0.76897 1.04809 1.04093 1.55195 1.16144 1.19283 1.86428 1.17196 0.91760 0.85003 0.96447 1.20484 0.95605 0.98748 1.14724 1.20748 0.98689 0.92372 0.98365 1.21280 0.96048 0.97516 1.07832 1.17788 0.91289 0.92447 0.88854 1.19782 1.19331 0.91138 1.22545 0.90633 1.26718 0.92761 1.03676 0.94576 1.69868 1.28751 1.27966 1.18046 0.85272 0.79728 0.75877 0.78939 1.18310 1.19113 1.18815 1.20854 1.00836 0.93302 1.14003 1.04990 0.72904 0.72037 0.79896 1.30347 1.14115 1.13720 1.21829 1.93610 1.44940 1.82676 1.76131 1.93530 1.65330 1.62506 1.76077 0.89753 0.90621 0.88677 0.86207 0.86459 0.87911 0.90060 0.87502 0.84218 0.82682 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 10.45 127.77 1.33 3.16 16 2 N -0.94 -32.03 3.32 -360.98 -1.20 -33.23 16 3 C 0.19 8.29 6.05 38.16 0.23 8.52 16 4 C -0.27 -11.90 8.43 22.59 0.19 -11.71 16 5 C -0.08 -3.88 10.02 22.20 0.22 -3.66 16 6 C -0.21 -10.96 8.69 22.75 0.20 -10.76 16 7 C 0.10 5.39 5.57 -21.31 -0.12 5.27 16 8 C -0.50 -26.82 9.05 23.46 0.21 -26.61 16 9 H 0.08 3.91 7.90 -2.91 -0.02 3.89 16 10 C 0.04 1.91 5.14 85.25 0.44 2.35 16 11 N -0.82 -42.40 10.97 21.82 0.24 -42.16 16 12 Si 0.98 37.91 29.59 68.60 2.03 39.94 16 13 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 14 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 16 C -0.27 -13.02 9.08 22.86 0.21 -12.82 16 17 S 2.60 76.13 5.43 -56.49 -0.31 75.82 16 18 C -0.65 -11.05 10.85 113.37 1.23 -9.82 16 19 O -0.98 -37.47 15.18 -127.65 -1.94 -39.41 16 20 O -0.98 -31.62 16.57 -127.65 -2.12 -33.73 16 21 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 22 H 0.08 2.25 5.88 -2.39 -0.01 2.23 16 23 H 0.09 2.32 6.91 -2.39 -0.02 2.31 16 24 H 0.12 4.42 5.10 -2.91 -0.01 4.40 16 25 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 26 H 0.10 5.66 6.18 -2.91 -0.02 5.64 16 27 H 0.29 13.46 8.30 -92.71 -0.77 12.70 16 28 H 0.11 4.89 6.15 -2.91 -0.02 4.87 16 29 H 0.14 2.44 7.15 -2.39 -0.02 2.42 16 30 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.54 271.76 2.01 -67.53 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 1.15 Total: 21.31 kcal Atomic # 6 Polarization: -60.21 SS G_CDS: 4.15 Total: -56.07 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -0.96 Total: -75.39 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -4.05 Total: -73.15 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 16 Polarization: 76.13 SS G_CDS: -0.31 Total: 75.82 kcal Total: -69.54 2.01 -67.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258576916.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.638 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds