Wall clock time and date at job start Mon Mar 30 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36849 * 120.00115 * 2 1 4 4 H 1.07996 * 119.99905 * 205.29569 * 3 2 1 5 5 C 1.38787 * 120.00020 * 25.30387 * 3 2 1 6 6 N 1.31592 * 120.00398 * 14.85475 * 5 3 2 7 7 Si 1.86800 * 120.00040 * 194.86318 * 5 3 2 8 8 H 1.48500 * 109.47519 * 89.99529 * 7 5 3 9 9 H 1.48505 * 109.47400 * 209.99818 * 7 5 3 10 10 H 1.48498 * 109.46923 * 329.99621 * 7 5 3 11 11 C 1.39303 * 119.99906 * 180.02562 * 2 1 3 12 12 C 1.39076 * 120.08655 * 359.97438 * 11 2 1 13 13 C 1.38052 * 119.91033 * 180.02562 * 12 11 2 14 14 C 1.38335 * 120.08633 * 0.02562 * 13 12 11 15 15 S 1.76200 * 119.90776 * 180.02562 * 14 13 12 16 16 C 1.81395 * 104.45125 * 89.99902 * 15 14 13 17 17 O 1.42102 * 104.27584 * 333.92583 * 15 14 13 18 18 O 1.42101 * 104.27359 * 206.06906 * 15 14 13 19 19 C 1.38325 * 120.18198 * 0.27237 * 14 13 12 20 20 C 1.38054 * 120.08741 * 359.44893 * 19 14 13 21 21 H 1.09004 * 109.47225 * 264.85058 * 1 2 3 22 22 H 1.09004 * 109.46834 * 24.84602 * 1 2 3 23 23 H 1.08994 * 109.47645 * 144.84577 * 1 2 3 24 24 H 0.96994 * 120.00413 * 180.02562 * 6 5 3 25 25 H 1.08007 * 120.04901 * 0.02562 * 12 11 2 26 26 H 1.08003 * 119.95794 * 179.97438 * 13 12 11 27 27 H 1.09003 * 109.47157 * 300.00050 * 16 15 14 28 28 H 1.08996 * 109.47432 * 180.02562 * 16 15 14 29 29 H 1.08996 * 109.47233 * 59.99469 * 16 15 14 30 30 H 1.07995 * 119.95985 * 179.70765 * 19 14 13 31 31 H 1.08000 * 120.04632 * 180.24728 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1515 1.2299 -0.3996 5 6 1.5552 2.3294 0.5137 6 7 0.4735 2.2324 1.2568 7 14 2.2910 4.0075 0.1501 8 1 1.6891 4.5532 -1.0929 9 1 2.0095 4.9272 1.2816 10 1 3.7595 3.8761 -0.0273 11 6 2.1615 -1.2064 -0.0005 12 6 1.4679 -2.4119 -0.0005 13 6 2.1618 -3.6053 -0.0005 14 6 3.5452 -3.6032 0.0000 15 16 4.4261 -5.1292 -0.0007 16 6 4.6530 -5.5200 -1.7574 17 8 3.5297 -6.0515 0.6036 18 8 5.6723 -4.8145 0.6052 19 6 4.2387 -2.4064 0.0062 20 6 3.5523 -1.2086 0.0004 21 1 -0.3634 -0.0922 1.0235 22 1 -0.3633 0.9326 -0.4318 23 1 -0.3634 -0.8402 -0.5917 24 1 0.0581 3.0321 1.6155 25 1 0.3878 -2.4144 -0.0005 26 1 1.6240 -4.5419 -0.0001 27 1 3.6790 -5.6123 -2.2379 28 1 5.1955 -6.4606 -1.8533 29 1 5.2205 -4.7224 -2.2368 30 1 5.3187 -2.4089 0.0114 31 1 4.0945 -0.2746 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258698783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:56 Heat of formation + Delta-G solvation = -32.370925 kcal Electronic energy + Delta-G solvation = -16600.253251 eV Core-core repulsion = 13781.458685 eV Total energy + Delta-G solvation = -2818.794566 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.67254 -36.54285 -35.87826 -35.37117 -32.33187 -30.20692 -29.35054 -28.73000 -26.82684 -24.23272 -21.69544 -20.78771 -18.42835 -17.55720 -17.30821 -16.06204 -15.70010 -15.37405 -14.77526 -14.28476 -13.80483 -13.58751 -13.18920 -13.08970 -12.89383 -12.63840 -12.29444 -11.84692 -11.61323 -11.57620 -11.49364 -11.41664 -11.03102 -10.92329 -10.66804 -10.58152 -10.00122 -9.83795 -9.67225 -8.93172 -8.15652 -7.06271 -6.68306 -4.10469 0.66425 2.03103 2.41186 2.98331 3.02606 3.05821 3.58688 3.80747 4.21691 4.55051 4.59148 4.64894 4.88734 5.00650 5.29684 5.69134 5.75051 5.81177 6.08594 6.24389 6.41617 6.53194 6.67961 6.90177 6.91053 7.03187 7.08780 7.20686 7.32047 7.59554 7.93932 8.31106 8.92116 9.21861 10.27321 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.005213 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.922331 B = 5369.896506 C = 5750.880139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.416 5.416 3 C -0.318 4.318 4 H 0.104 0.896 5 C 0.034 3.966 6 N -0.859 5.859 7 Si 0.933 3.067 8 H -0.274 1.274 9 H -0.280 1.280 10 H -0.265 1.265 11 C 0.231 3.769 12 C -0.250 4.250 13 C 0.024 3.976 14 C -0.776 4.776 15 S 2.509 3.491 16 C -0.658 4.658 17 O -0.961 6.961 18 O -0.960 6.960 19 C 0.019 3.981 20 C -0.226 4.226 21 H 0.058 0.942 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.276 0.724 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -6.761 -6.055 9.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.094 5.094 3 C -0.446 4.446 4 H 0.121 0.879 5 C -0.174 4.174 6 N -0.492 5.492 7 Si 0.758 3.242 8 H -0.199 1.199 9 H -0.205 1.205 10 H -0.190 1.190 11 C 0.106 3.894 12 C -0.275 4.275 13 C 0.002 3.998 14 C -0.873 4.873 15 S 2.693 3.307 16 C -0.806 4.806 17 O -0.958 6.958 18 O -0.957 6.957 19 C -0.003 4.003 20 C -0.250 4.250 21 H 0.076 0.924 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.130 0.870 26 H 0.135 0.865 27 H 0.144 0.856 28 H 0.135 0.865 29 H 0.144 0.856 30 H 0.136 0.864 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.635 -6.743 -5.230 8.931 hybrid contribution -0.186 1.503 -0.735 1.683 sum 2.449 -5.240 -5.965 8.309 Atomic orbital electron populations 1.21597 0.80195 1.00414 1.01177 1.42967 1.04923 1.02750 1.58732 1.19792 1.01659 0.84509 1.38686 0.87861 1.25508 0.96648 1.00835 0.94360 1.70073 1.19994 1.30828 1.28287 0.85811 0.79709 0.80351 0.78308 1.19924 1.20493 1.18956 1.18184 0.91780 0.85871 0.93581 1.20403 0.98669 0.91383 1.17025 1.20181 0.91790 0.97117 0.90670 1.28948 1.04987 1.16271 1.37061 1.04302 0.74375 0.75197 0.76798 1.30338 1.11315 1.11016 1.27965 1.93498 1.65076 1.63878 1.73363 1.93502 1.44410 1.84526 1.73273 1.20256 0.98073 0.90997 0.90925 1.20502 0.92503 0.97716 1.14263 0.92388 0.90722 0.94439 0.91407 0.86968 0.86456 0.85634 0.86529 0.85581 0.86403 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.35 8.33 59.85 0.50 2.85 16 2 N -0.42 -9.79 3.12 -120.50 -0.38 -10.17 16 3 C -0.32 -7.75 8.94 -15.11 -0.14 -7.89 16 4 H 0.10 2.43 6.26 -52.49 -0.33 2.11 16 5 C 0.03 0.80 4.98 -17.45 -0.09 0.72 16 6 N -0.86 -21.25 11.03 55.49 0.61 -20.64 16 7 Si 0.93 18.51 29.58 -169.99 -5.03 13.48 16 8 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 9 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 10 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 11 C 0.23 5.16 6.52 -83.84 -0.55 4.61 16 12 C -0.25 -5.06 9.20 -39.34 -0.36 -5.42 16 13 C 0.02 0.44 9.46 -39.61 -0.37 0.06 16 14 C -0.78 -13.97 5.66 -39.51 -0.22 -14.19 16 15 S 2.51 37.67 5.80 -107.50 -0.62 37.05 16 16 C -0.66 -6.72 10.80 101.05 1.09 -5.63 16 17 O -0.96 -17.04 17.12 -57.54 -0.98 -18.03 16 18 O -0.96 -17.20 17.11 -57.54 -0.98 -18.18 16 19 C 0.02 0.36 9.46 -39.62 -0.37 -0.01 16 20 C -0.23 -4.81 9.27 -39.34 -0.36 -5.18 16 21 H 0.06 1.30 7.85 -51.93 -0.41 0.89 16 22 H 0.07 1.65 6.86 -51.93 -0.36 1.30 16 23 H 0.04 0.69 6.49 -51.93 -0.34 0.36 16 24 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 25 H 0.11 2.09 6.26 -52.48 -0.33 1.76 16 26 H 0.12 1.89 7.56 -52.48 -0.40 1.49 16 27 H 0.12 1.13 8.14 -51.92 -0.42 0.71 16 28 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.12 1.99 7.56 -52.49 -0.40 1.59 16 31 H 0.12 2.54 6.21 -52.49 -0.33 2.22 16 LS Contribution 275.47 15.07 4.15 4.15 Total: -1.00 -30.19 275.47 -7.39 -37.58 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.28 Total: 4.83 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: -0.88 Total: -30.08 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.24 Total: -30.81 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -1.97 Total: -36.21 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 16 Polarization: 37.67 SS G_CDS: -0.62 Total: 37.05 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.19 -7.39 -37.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258698783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.211 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds