Wall clock time and date at job start Mon Mar 30 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36849 * 120.00115 * 2 1 4 4 H 1.07996 * 119.99905 * 205.29569 * 3 2 1 5 5 C 1.38787 * 120.00020 * 25.30387 * 3 2 1 6 6 N 1.31592 * 120.00398 * 14.85475 * 5 3 2 7 7 Si 1.86800 * 120.00040 * 194.86318 * 5 3 2 8 8 H 1.48500 * 109.47519 * 89.99529 * 7 5 3 9 9 H 1.48505 * 109.47400 * 209.99818 * 7 5 3 10 10 H 1.48498 * 109.46923 * 329.99621 * 7 5 3 11 11 C 1.39303 * 119.99906 * 180.02562 * 2 1 3 12 12 C 1.39076 * 120.08655 * 359.97438 * 11 2 1 13 13 C 1.38052 * 119.91033 * 180.02562 * 12 11 2 14 14 C 1.38335 * 120.08633 * 0.02562 * 13 12 11 15 15 S 1.76200 * 119.90776 * 180.02562 * 14 13 12 16 16 C 1.81395 * 104.45125 * 89.99902 * 15 14 13 17 17 O 1.42102 * 104.27584 * 333.92583 * 15 14 13 18 18 O 1.42101 * 104.27359 * 206.06906 * 15 14 13 19 19 C 1.38325 * 120.18198 * 0.27237 * 14 13 12 20 20 C 1.38054 * 120.08741 * 359.44893 * 19 14 13 21 21 H 1.09004 * 109.47225 * 264.85058 * 1 2 3 22 22 H 1.09004 * 109.46834 * 24.84602 * 1 2 3 23 23 H 1.08994 * 109.47645 * 144.84577 * 1 2 3 24 24 H 0.96994 * 120.00413 * 180.02562 * 6 5 3 25 25 H 1.08007 * 120.04901 * 0.02562 * 12 11 2 26 26 H 1.08003 * 119.95794 * 179.97438 * 13 12 11 27 27 H 1.09003 * 109.47157 * 300.00050 * 16 15 14 28 28 H 1.08996 * 109.47432 * 180.02562 * 16 15 14 29 29 H 1.08996 * 109.47233 * 59.99469 * 16 15 14 30 30 H 1.07995 * 119.95985 * 179.70765 * 19 14 13 31 31 H 1.08000 * 120.04632 * 180.24728 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1492 1.1851 0.0000 4 1 3.1515 1.2299 -0.3996 5 6 1.5552 2.3294 0.5137 6 7 0.4735 2.2324 1.2568 7 14 2.2910 4.0075 0.1501 8 1 1.6891 4.5532 -1.0929 9 1 2.0095 4.9272 1.2816 10 1 3.7595 3.8761 -0.0273 11 6 2.1615 -1.2064 -0.0005 12 6 1.4679 -2.4119 -0.0005 13 6 2.1618 -3.6053 -0.0005 14 6 3.5452 -3.6032 0.0000 15 16 4.4261 -5.1292 -0.0007 16 6 4.6530 -5.5200 -1.7574 17 8 3.5297 -6.0515 0.6036 18 8 5.6723 -4.8145 0.6052 19 6 4.2387 -2.4064 0.0062 20 6 3.5523 -1.2086 0.0004 21 1 -0.3634 -0.0922 1.0235 22 1 -0.3633 0.9326 -0.4318 23 1 -0.3634 -0.8402 -0.5917 24 1 0.0581 3.0321 1.6155 25 1 0.3878 -2.4144 -0.0005 26 1 1.6240 -4.5419 -0.0001 27 1 3.6790 -5.6123 -2.2379 28 1 5.1955 -6.4606 -1.8533 29 1 5.2205 -4.7224 -2.2368 30 1 5.3187 -2.4089 0.0114 31 1 4.0945 -0.2746 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258698783.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:56 Heat of formation + Delta-G solvation = -52.949119 kcal Electronic energy + Delta-G solvation = -16601.145589 eV Core-core repulsion = 13781.458685 eV Total energy + Delta-G solvation = -2819.686903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.29620 -37.86956 -37.49603 -36.70501 -34.04096 -31.79744 -30.60157 -29.98373 -28.52717 -25.90256 -23.29261 -22.37639 -19.77622 -19.22623 -18.78383 -17.62389 -16.90197 -16.73552 -16.36898 -15.85809 -15.37012 -15.26740 -14.68432 -14.20201 -14.06092 -13.79510 -13.74924 -13.43713 -13.23789 -13.05517 -12.92046 -12.84178 -12.66055 -12.56410 -12.15735 -11.86168 -11.58597 -11.34086 -11.27106 -10.62726 -9.73272 -8.76344 -8.39608 -5.91933 -0.51157 0.47525 0.79331 1.39525 1.41871 1.51200 2.18021 2.30954 2.69282 3.00615 3.07259 3.38420 3.49238 4.13304 4.24502 4.25402 4.38519 4.47142 4.66033 4.80616 4.91048 5.04324 5.07516 5.19647 5.26546 5.33406 5.47894 5.57924 5.70802 5.90902 6.32877 6.59306 7.23257 7.51194 8.55656 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.042613 B = 0.005213 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.922331 B = 5369.896506 C = 5750.880139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.450 5.450 3 C -0.340 4.340 4 H 0.099 0.901 5 C -0.010 4.010 6 N -0.896 5.896 7 Si 0.995 3.005 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.262 1.262 11 C 0.216 3.784 12 C -0.262 4.262 13 C 0.022 3.978 14 C -0.772 4.772 15 S 2.524 3.476 16 C -0.627 4.627 17 O -0.989 6.989 18 O -0.991 6.991 19 C 0.018 3.982 20 C -0.250 4.250 21 H 0.036 0.964 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.275 0.725 25 H 0.124 0.876 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -9.107 -7.736 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.132 5.132 3 C -0.468 4.468 4 H 0.116 0.884 5 C -0.212 4.212 6 N -0.531 5.531 7 Si 0.818 3.182 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.186 1.186 11 C 0.095 3.905 12 C -0.286 4.286 13 C 0.001 3.999 14 C -0.864 4.864 15 S 2.709 3.291 16 C -0.780 4.780 17 O -0.986 6.986 18 O -0.989 6.989 19 C -0.002 4.002 20 C -0.274 4.274 21 H 0.055 0.945 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.142 0.858 26 H 0.164 0.836 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.975 -9.081 -6.866 12.059 hybrid contribution -0.411 1.779 -0.288 1.849 sum 3.564 -7.302 -7.154 10.826 Atomic orbital electron populations 1.21386 0.79816 1.00536 1.00098 1.43013 1.05244 1.02783 1.62179 1.19945 1.01967 0.85534 1.39373 0.88351 1.26277 0.97128 1.03708 0.94110 1.70171 1.21553 1.31314 1.30085 0.84877 0.78981 0.76325 0.77972 1.19338 1.20673 1.18603 1.18619 0.92469 0.86463 0.92930 1.20689 0.99590 0.91332 1.17026 1.20592 0.92306 0.97630 0.89352 1.29697 1.05357 1.17988 1.33385 1.03992 0.72761 0.73185 0.79143 1.30037 1.13720 1.13409 1.20860 1.93469 1.65754 1.63383 1.76004 1.93470 1.44888 1.84500 1.76002 1.20576 0.99325 0.90620 0.89716 1.20668 0.92562 0.98543 1.15641 0.94501 0.92268 0.91986 0.91590 0.85813 0.83621 0.83344 0.83140 0.83555 0.84216 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.58 8.33 127.77 1.06 6.64 16 2 N -0.45 -21.98 3.12 -535.16 -1.67 -23.65 16 3 C -0.34 -17.29 8.94 84.04 0.75 -16.54 16 4 H 0.10 4.87 6.26 -2.91 -0.02 4.85 16 5 C -0.01 -0.47 4.98 84.86 0.42 -0.05 16 6 N -0.90 -46.45 11.03 21.64 0.24 -46.21 16 7 Si 1.00 39.17 29.58 68.60 2.03 41.20 16 8 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 9 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 10 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 11 C 0.22 9.80 6.52 38.36 0.25 10.05 16 12 C -0.26 -10.39 9.20 22.43 0.21 -10.18 16 13 C 0.02 0.75 9.46 22.25 0.21 0.96 16 14 C -0.77 -25.77 5.66 22.31 0.13 -25.64 16 15 S 2.52 66.34 5.80 -56.49 -0.33 66.01 16 16 C -0.63 -8.79 10.80 113.37 1.22 -7.56 16 17 O -0.99 -31.83 17.12 -127.65 -2.18 -34.02 16 18 O -0.99 -32.66 17.11 -127.65 -2.18 -34.84 16 19 C 0.02 0.67 9.46 22.25 0.21 0.88 16 20 C -0.25 -10.74 9.27 22.43 0.21 -10.53 16 21 H 0.04 1.74 7.85 -2.38 -0.02 1.72 16 22 H 0.06 2.76 6.86 -2.39 -0.02 2.74 16 23 H 0.06 2.34 6.49 -2.39 -0.02 2.32 16 24 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 25 H 0.12 4.52 6.26 -2.91 -0.02 4.50 16 26 H 0.15 4.20 7.56 -2.91 -0.02 4.18 16 27 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.14 4.43 7.56 -2.91 -0.02 4.40 16 31 H 0.11 4.91 6.21 -2.91 -0.02 4.89 16 Total: -1.00 -67.37 275.47 1.72 -65.65 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 1.14 Total: 17.83 kcal Atomic # 6 Polarization: -56.64 SS G_CDS: 4.67 Total: -51.97 kcal Atomic # 7 Polarization: -68.43 SS G_CDS: -1.43 Total: -69.86 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -4.37 Total: -68.86 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Atomic # 16 Polarization: 66.34 SS G_CDS: -0.33 Total: 66.01 kcal Total: -67.37 1.72 -65.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258698783.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.702 kcal (2) G-P(sol) polarization free energy of solvation -67.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds