Wall clock time and date at job start Mon Mar 30 2020 05:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81397 * 109.47235 * 2 1 4 4 O 1.42105 * 110.54275 * 68.37271 * 3 2 1 5 5 O 1.42101 * 110.54298 * 291.62373 * 3 2 1 6 6 C 1.76193 * 104.44909 * 179.97438 * 3 2 1 7 7 C 1.38333 * 119.90971 * 269.72487 * 6 3 2 8 8 C 1.38051 * 120.08779 * 179.72480 * 7 6 3 9 9 C 1.39087 * 119.91109 * 0.57180 * 8 7 6 10 10 N 1.39295 * 120.09055 * 179.68261 * 9 8 7 11 11 C 1.36853 * 119.99950 * 0.02562 * 10 9 8 12 12 H 1.07999 * 120.00024 * 0.02562 * 11 10 9 13 13 C 1.38792 * 119.99733 * 180.02562 * 11 10 9 14 14 N 1.31593 * 120.00346 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99871 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47366 * 59.99932 * 15 13 11 17 17 H 1.48501 * 109.47225 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46930 * 299.99744 * 15 13 11 19 19 C 1.39078 * 119.81817 * 359.70669 * 9 8 7 20 20 C 1.38049 * 119.91094 * 359.97438 * 19 9 8 21 21 H 1.08995 * 109.47216 * 300.00010 * 1 2 3 22 22 H 1.09000 * 109.46805 * 60.00123 * 1 2 3 23 23 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47149 * 240.00025 * 2 1 3 25 25 H 1.09000 * 109.46805 * 119.99877 * 2 1 3 26 26 H 1.07996 * 119.95664 * 359.97438 * 7 6 3 27 27 H 1.08006 * 120.04781 * 180.25425 * 8 7 6 28 28 H 0.97001 * 120.00152 * 180.02562 * 10 9 8 29 29 H 0.97000 * 120.00388 * 180.02562 * 14 13 11 30 30 H 1.07995 * 120.04467 * 179.97438 * 19 9 8 31 31 H 1.08004 * 119.95227 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 6 3.8899 1.5559 0.0008 7 6 4.5771 1.5015 1.2001 8 6 5.9517 1.3749 1.2051 9 6 6.6470 1.3141 0.0019 10 7 8.0346 1.1931 0.0026 11 6 8.7157 1.1332 1.1880 12 1 8.1773 1.1795 2.1231 13 6 10.0985 1.0132 1.1886 14 7 10.7545 0.9563 0.0493 15 14 11.0281 0.9308 2.8067 16 1 10.5655 -0.2468 3.5841 17 1 12.4828 0.8041 2.5360 18 1 10.7752 2.1691 3.5865 19 6 5.9529 1.3750 -1.2017 20 6 4.5776 1.4950 -1.1980 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0370 1.5540 2.1339 27 1 6.4872 1.3283 2.1419 28 1 8.5182 1.1512 -0.8373 29 1 11.7208 0.8720 0.0497 30 1 6.4890 1.3286 -2.1380 31 1 4.0379 1.5419 -2.1323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258800523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:14 Heat of formation + Delta-G solvation = -54.277863 kcal Electronic energy + Delta-G solvation = -16295.337765 eV Core-core repulsion = 13475.593243 eV Total energy + Delta-G solvation = -2819.744522 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.48429 -36.53406 -35.46436 -35.26074 -33.03571 -32.26416 -30.08306 -28.46056 -25.12078 -23.87127 -22.04421 -21.24416 -18.40742 -17.99365 -17.29979 -16.48273 -15.77776 -15.60284 -14.93607 -14.42093 -14.06066 -13.69994 -13.24199 -13.12731 -12.65593 -12.61165 -12.44630 -12.36727 -11.73408 -11.58070 -11.52872 -11.44660 -11.44465 -10.93346 -10.64977 -10.59345 -10.32180 -10.05208 -9.78113 -9.09534 -8.19111 -7.18993 -6.92468 -4.08014 0.65469 1.99438 2.39243 2.99466 3.00038 3.01880 3.60517 3.79683 4.15989 4.52277 4.52443 4.78907 4.91473 4.96202 5.05555 5.19613 5.58706 5.69373 5.73984 5.75902 5.87157 6.17307 6.38885 6.68323 6.86211 6.91570 7.07404 7.18017 7.28593 7.44555 7.91099 8.39465 8.94967 9.14088 10.21879 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.046433 B = 0.004631 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.869917 B = 6045.368625 C = 6311.937239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.621 4.621 3 S 2.507 3.493 4 O -0.959 6.959 5 O -0.960 6.960 6 C -0.781 4.781 7 C 0.023 3.977 8 C -0.233 4.233 9 C 0.224 3.776 10 N -0.526 5.526 11 C -0.308 4.308 12 H 0.110 0.890 13 C 0.026 3.974 14 N -0.876 5.876 15 Si 0.939 3.061 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.268 1.268 19 C -0.250 4.250 20 C 0.025 3.975 21 H 0.069 0.931 22 H 0.069 0.931 23 H 0.075 0.925 24 H 0.129 0.871 25 H 0.130 0.870 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.403 0.597 29 H 0.282 0.718 30 H 0.109 0.891 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 -3.500 0.232 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.748 4.748 3 S 2.691 3.309 4 O -0.956 6.956 5 O -0.957 6.957 6 C -0.879 4.879 7 C 0.001 3.999 8 C -0.258 4.258 9 C 0.096 3.904 10 N -0.121 5.121 11 C -0.438 4.438 12 H 0.128 0.872 13 C -0.180 4.180 14 N -0.510 5.510 15 Si 0.764 3.236 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.193 1.193 19 C -0.275 4.275 20 C 0.004 3.996 21 H 0.088 0.912 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.148 0.852 25 H 0.148 0.852 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.238 0.762 29 H 0.092 0.908 30 H 0.127 0.873 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.624 -2.807 0.339 10.994 hybrid contribution 1.547 -0.872 0.289 1.800 sum -9.076 -3.679 0.628 9.814 Atomic orbital electron populations 1.21524 0.91491 1.04395 1.03186 1.30352 1.05940 1.27000 1.11504 1.04552 0.75518 0.76793 0.74004 1.93488 1.85028 1.72154 1.44943 1.93484 1.85048 1.72174 1.44987 1.28901 1.21470 1.38017 0.99465 1.20246 0.93927 0.90488 0.95221 1.20450 0.93678 1.14986 0.96660 1.18014 0.83657 0.94639 0.94132 1.41389 1.02350 1.58876 1.09489 1.19918 0.89905 1.47271 0.86662 0.87232 1.25486 0.96816 0.96108 0.99590 1.69671 1.10063 1.45172 1.26109 0.85760 0.78158 0.79534 0.80111 1.19303 1.20391 1.19250 1.20270 0.94323 1.17250 0.95659 1.20133 0.93651 0.90559 0.95266 0.91180 0.91204 0.90593 0.85242 0.85202 0.86445 0.86229 0.76160 0.90762 0.87282 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.92 37.16 0.37 -1.06 16 2 C -0.62 -6.90 6.70 37.16 0.25 -6.65 16 3 S 2.51 39.00 5.16 -107.50 -0.55 38.45 16 4 O -0.96 -17.40 17.11 -57.54 -0.98 -18.38 16 5 O -0.96 -17.29 17.12 -57.54 -0.99 -18.27 16 6 C -0.78 -14.18 5.66 -39.51 -0.22 -14.41 16 7 C 0.02 0.43 9.46 -39.62 -0.37 0.06 16 8 C -0.23 -4.87 9.30 -39.34 -0.37 -5.24 16 9 C 0.22 4.89 6.62 -83.84 -0.55 4.34 16 10 N -0.53 -12.25 5.43 -9.60 -0.05 -12.30 16 11 C -0.31 -7.39 9.56 -15.11 -0.14 -7.54 16 12 H 0.11 2.52 5.68 -52.49 -0.30 2.22 16 13 C 0.03 0.62 5.50 -17.45 -0.10 0.53 16 14 N -0.88 -21.79 13.05 55.49 0.72 -21.06 16 15 Si 0.94 18.44 29.55 -169.99 -5.02 13.42 16 16 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 17 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 C -0.25 -4.98 9.90 -39.34 -0.39 -5.37 16 20 C 0.03 0.47 9.46 -39.62 -0.37 0.10 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.13 1.26 8.14 -51.92 -0.42 0.83 16 25 H 0.13 1.27 8.14 -51.92 -0.42 0.85 16 26 H 0.12 1.97 7.55 -52.49 -0.40 1.58 16 27 H 0.12 2.44 5.96 -52.48 -0.31 2.12 16 28 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 31 H 0.12 1.90 7.57 -52.48 -0.40 1.50 16 LS Contribution 282.56 15.07 4.26 4.26 Total: -1.00 -29.25 282.56 -7.92 -37.17 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -3.40 Total: 11.97 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: -1.91 Total: -35.25 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.67 Total: -33.36 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -1.97 Total: -36.65 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Atomic # 16 Polarization: 39.00 SS G_CDS: -0.55 Total: 38.45 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.25 -7.92 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258800523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.109 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds