Wall clock time and date at job start Mon Mar 30 2020 05:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81397 * 109.47235 * 2 1 4 4 O 1.42105 * 110.54275 * 68.37271 * 3 2 1 5 5 O 1.42101 * 110.54298 * 291.62373 * 3 2 1 6 6 C 1.76193 * 104.44909 * 179.97438 * 3 2 1 7 7 C 1.38333 * 119.90971 * 269.72487 * 6 3 2 8 8 C 1.38051 * 120.08779 * 179.72480 * 7 6 3 9 9 C 1.39087 * 119.91109 * 0.57180 * 8 7 6 10 10 N 1.39295 * 120.09055 * 179.68261 * 9 8 7 11 11 C 1.36853 * 119.99950 * 0.02562 * 10 9 8 12 12 H 1.07999 * 120.00024 * 0.02562 * 11 10 9 13 13 C 1.38792 * 119.99733 * 180.02562 * 11 10 9 14 14 N 1.31593 * 120.00346 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99871 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47366 * 59.99932 * 15 13 11 17 17 H 1.48501 * 109.47225 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46930 * 299.99744 * 15 13 11 19 19 C 1.39078 * 119.81817 * 359.70669 * 9 8 7 20 20 C 1.38049 * 119.91094 * 359.97438 * 19 9 8 21 21 H 1.08995 * 109.47216 * 300.00010 * 1 2 3 22 22 H 1.09000 * 109.46805 * 60.00123 * 1 2 3 23 23 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47149 * 240.00025 * 2 1 3 25 25 H 1.09000 * 109.46805 * 119.99877 * 2 1 3 26 26 H 1.07996 * 119.95664 * 359.97438 * 7 6 3 27 27 H 1.08006 * 120.04781 * 180.25425 * 8 7 6 28 28 H 0.97001 * 120.00152 * 180.02562 * 10 9 8 29 29 H 0.97000 * 120.00388 * 180.02562 * 14 13 11 30 30 H 1.07995 * 120.04467 * 179.97438 * 19 9 8 31 31 H 1.08004 * 119.95227 * 180.02562 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 6 3.8899 1.5559 0.0008 7 6 4.5771 1.5015 1.2001 8 6 5.9517 1.3749 1.2051 9 6 6.6470 1.3141 0.0019 10 7 8.0346 1.1931 0.0026 11 6 8.7157 1.1332 1.1880 12 1 8.1773 1.1795 2.1231 13 6 10.0985 1.0132 1.1886 14 7 10.7545 0.9563 0.0493 15 14 11.0281 0.9308 2.8067 16 1 10.5655 -0.2468 3.5841 17 1 12.4828 0.8041 2.5360 18 1 10.7752 2.1691 3.5865 19 6 5.9529 1.3750 -1.2017 20 6 4.5776 1.4950 -1.1980 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 4.0370 1.5540 2.1339 27 1 6.4872 1.3283 2.1419 28 1 8.5182 1.1512 -0.8373 29 1 11.7208 0.8720 0.0497 30 1 6.4890 1.3286 -2.1380 31 1 4.0379 1.5419 -2.1323 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258800523.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:14 Heat of formation + Delta-G solvation = -74.197908 kcal Electronic energy + Delta-G solvation = -16296.201563 eV Core-core repulsion = 13475.593243 eV Total energy + Delta-G solvation = -2820.608320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10675 -37.89872 -37.00456 -36.71341 -33.95294 -33.88601 -31.66922 -30.08289 -26.81111 -24.78887 -23.62894 -22.80183 -19.81877 -19.59191 -18.78903 -17.96146 -17.01878 -16.89657 -16.52857 -15.93247 -15.26292 -15.12355 -14.69284 -14.37243 -14.16571 -14.08698 -13.89455 -13.33983 -13.26119 -13.02138 -12.95860 -12.85650 -12.57719 -12.27905 -12.19169 -12.15617 -11.67688 -11.56214 -11.12765 -10.77797 -9.76755 -8.86054 -8.63388 -5.88712 -0.57798 0.43299 0.77308 1.39733 1.45840 1.50285 2.19527 2.28267 2.65800 3.10484 3.25151 3.34448 3.43474 3.89080 4.03280 4.16906 4.24421 4.50377 4.62130 4.77330 4.89303 4.96896 5.05016 5.16714 5.19477 5.30093 5.45387 5.55954 5.66517 5.78307 6.31308 6.66260 7.27864 7.42408 8.53099 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.046433 B = 0.004631 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.869917 B = 6045.368625 C = 6311.937239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.589 4.589 3 S 2.516 3.484 4 O -0.987 6.987 5 O -0.985 6.985 6 C -0.777 4.777 7 C 0.021 3.979 8 C -0.254 4.254 9 C 0.216 3.784 10 N -0.556 5.556 11 C -0.330 4.330 12 H 0.111 0.889 13 C -0.021 4.021 14 N -0.918 5.918 15 Si 1.001 2.999 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.262 4.262 20 C 0.023 3.977 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.105 0.895 24 H 0.154 0.846 25 H 0.152 0.848 26 H 0.141 0.859 27 H 0.117 0.883 28 H 0.396 0.604 29 H 0.281 0.719 30 H 0.121 0.879 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.572 -4.557 0.575 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.722 4.722 3 S 2.702 3.298 4 O -0.984 6.984 5 O -0.983 6.983 6 C -0.870 4.870 7 C 0.001 3.999 8 C -0.279 4.279 9 C 0.092 3.908 10 N -0.155 5.155 11 C -0.459 4.459 12 H 0.128 0.872 13 C -0.221 4.221 14 N -0.555 5.555 15 Si 0.824 3.176 16 H -0.187 1.187 17 H -0.203 1.203 18 H -0.190 1.190 19 C -0.286 4.286 20 C 0.002 3.998 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.123 0.877 24 H 0.172 0.828 25 H 0.170 0.830 26 H 0.158 0.842 27 H 0.135 0.865 28 H 0.230 0.770 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.503 -3.808 0.693 14.047 hybrid contribution 1.892 -0.553 0.097 1.974 sum -11.611 -4.360 0.790 12.428 Atomic orbital electron populations 1.21747 0.89873 1.06490 1.03834 1.30066 1.07124 1.21027 1.13984 1.04429 0.73751 0.78810 0.72787 1.93457 1.84538 1.74584 1.45832 1.93455 1.84521 1.74548 1.45749 1.29599 1.24154 1.34334 0.98934 1.20579 0.93292 0.89315 0.96750 1.20654 0.94738 1.15994 0.96484 1.18448 0.83642 0.93465 0.95243 1.41309 1.02627 1.62652 1.08910 1.20129 0.90501 1.48194 0.87075 0.87177 1.26283 0.97334 0.96068 1.02458 1.69766 1.09967 1.48042 1.27753 0.84834 0.76756 0.79504 0.76516 1.18692 1.20348 1.19032 1.20574 0.95225 1.17167 0.95678 1.20533 0.93207 0.89322 0.96716 0.90773 0.90699 0.87667 0.82839 0.82978 0.84171 0.86470 0.76954 0.91008 0.86083 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.92 71.99 0.71 -1.57 16 2 C -0.59 -9.99 6.70 71.99 0.48 -9.51 16 3 S 2.52 70.09 5.16 -56.49 -0.29 69.79 16 4 O -0.99 -33.21 17.11 -127.65 -2.18 -35.39 16 5 O -0.99 -32.70 17.12 -127.65 -2.19 -34.88 16 6 C -0.78 -26.29 5.66 22.31 0.13 -26.16 16 7 C 0.02 0.78 9.46 22.25 0.21 0.99 16 8 C -0.25 -10.62 9.30 22.43 0.21 -10.41 16 9 C 0.22 9.59 6.62 38.36 0.25 9.84 16 10 N -0.56 -27.03 5.43 -184.29 -1.00 -28.03 16 11 C -0.33 -16.50 9.56 84.04 0.80 -15.70 16 12 H 0.11 5.26 5.68 -2.91 -0.02 5.24 16 13 C -0.02 -1.01 5.50 84.86 0.47 -0.55 16 14 N -0.92 -47.82 13.05 21.65 0.28 -47.54 16 15 Si 1.00 38.87 29.55 68.60 2.03 40.89 16 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 17 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 18 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 19 C -0.26 -10.29 9.90 22.43 0.22 -10.07 16 20 C 0.02 0.80 9.46 22.25 0.21 1.01 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.15 2.08 8.14 -2.39 -0.02 2.07 16 26 H 0.14 4.39 7.55 -2.91 -0.02 4.37 16 27 H 0.12 4.87 5.96 -2.91 -0.02 4.85 16 28 H 0.40 19.56 7.90 -92.71 -0.73 18.83 16 29 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 30 H 0.12 4.38 8.06 -2.91 -0.02 4.36 16 31 H 0.14 4.23 7.57 -2.91 -0.02 4.21 16 Total: -1.00 -64.44 282.56 0.77 -63.67 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.42 Total: 33.62 kcal Atomic # 6 Polarization: -65.83 SS G_CDS: 3.70 Total: -62.13 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -0.72 Total: -75.57 kcal Atomic # 8 Polarization: -65.91 SS G_CDS: -4.37 Total: -70.28 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Atomic # 16 Polarization: 70.09 SS G_CDS: -0.29 Total: 69.79 kcal Total: -64.44 0.77 -63.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258800523.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.528 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds