Wall clock time and date at job start Mon Mar 30 2020 04:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.38576 * 119.95637 * 254.72223 * 12 9 7 14 14 C 1.39212 * 119.93393 * 179.76811 * 13 12 9 15 15 C 1.38559 * 119.90972 * 0.50837 * 14 13 12 16 16 C 1.38605 * 120.01991 * 359.74563 * 15 14 13 17 17 O 1.36032 * 119.99699 * 180.02562 * 16 15 14 18 18 C 1.38336 * 119.96097 * 74.99965 * 12 9 7 19 19 F 1.35097 * 119.98098 * 359.95498 * 18 12 9 20 20 O 1.36559 * 108.64847 * 180.30626 * 14 13 12 21 21 C 1.43986 * 105.48971 * 17.52307 * 20 14 13 22 22 O 1.36607 * 131.43802 * 0.63853 * 13 12 9 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.00907 * 110.99792 * 176.04814 * 11 9 7 25 25 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 26 26 H 1.08003 * 119.99332 * 179.72245 * 15 14 13 27 27 H 0.96701 * 113.99960 * 269.97753 * 17 16 15 28 28 H 1.08998 * 110.56904 * 91.41697 * 21 20 14 29 29 H 1.09001 * 110.57358 * 214.29697 * 21 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.4395 -4.3710 -1.1718 14 6 3.3478 -5.4260 -1.1772 15 6 4.0327 -5.7539 -0.0182 16 6 3.8173 -5.0288 1.1433 17 8 4.4904 -5.3509 2.2807 18 6 2.9148 -3.9733 1.1459 19 9 2.7057 -3.2668 2.2783 20 8 3.3772 -5.9705 -2.4292 21 6 2.7895 -4.9800 -3.2932 22 8 1.9055 -4.2487 -2.4232 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1577 -3.4189 1.1814 25 1 0.9642 -2.5347 2.0330 26 1 4.7344 -6.5749 -0.0197 27 1 4.0363 -5.9992 2.8362 28 1 3.5577 -4.3220 -3.6995 29 1 2.2282 -5.4570 -4.0966 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260137747.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:43 Heat of formation + Delta-G solvation = -136.293008 kcal Electronic energy + Delta-G solvation = -19286.112664 eV Core-core repulsion = 15896.598522 eV Total energy + Delta-G solvation = -3389.514142 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.98078 -43.19527 -39.86697 -37.99415 -37.18281 -35.73352 -33.57144 -30.85210 -30.10147 -28.05558 -26.65406 -25.02371 -23.95363 -22.39954 -19.92244 -19.40576 -19.03951 -18.52645 -18.11572 -17.36716 -16.86410 -16.57337 -16.31105 -16.04884 -15.78972 -15.43799 -14.99349 -14.97022 -14.58864 -14.18777 -13.97655 -13.49792 -13.18723 -13.12200 -12.77022 -12.58980 -12.15900 -11.75216 -11.48515 -11.25737 -10.60272 -9.75483 -9.04808 -8.99310 -8.03765 -6.25997 -0.20426 -0.03650 1.39211 1.41076 1.52169 1.61967 2.19395 2.41034 2.45596 2.98919 3.19359 3.33294 3.38647 3.79846 3.98248 4.05385 4.12360 4.33082 4.40366 4.70839 4.82245 4.87908 4.93287 5.28150 5.40072 5.67898 5.97339 6.05751 6.54944 6.68617 7.01943 7.16146 7.45684 9.00685 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.008768 C = 0.007149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.168675 B = 3192.624915 C = 3915.435044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.036 3.964 3 Si 0.951 3.049 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.042 0.958 9 C 0.268 3.732 10 H 0.017 0.983 11 N -0.824 5.824 12 C -0.111 4.111 13 C 0.035 3.965 14 C 0.040 3.960 15 C -0.105 4.105 16 C 0.097 3.903 17 O -0.482 6.482 18 C 0.068 3.932 19 F -0.126 7.126 20 O -0.307 6.307 21 C 0.203 3.797 22 O -0.323 6.323 23 H 0.258 0.742 24 H 0.309 0.691 25 H 0.331 0.669 26 H 0.183 0.817 27 H 0.415 0.585 28 H 0.101 0.899 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 -13.620 -1.838 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.168 4.168 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.060 0.940 9 C 0.158 3.842 10 H 0.035 0.965 11 N -0.355 5.355 12 C -0.115 4.115 13 C -0.010 4.010 14 C -0.005 4.005 15 C -0.124 4.124 16 C 0.051 3.949 17 O -0.295 6.295 18 C 0.047 3.953 19 F -0.105 7.105 20 O -0.223 6.223 21 C 0.093 3.907 22 O -0.240 6.240 23 H 0.067 0.933 24 H 0.120 0.880 25 H 0.148 0.852 26 H 0.200 0.800 27 H 0.275 0.725 28 H 0.118 0.882 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.223 -12.501 -2.417 14.639 hybrid contribution 0.208 0.098 0.330 0.402 sum 7.431 -12.403 -2.087 14.608 Atomic orbital electron populations 1.70237 1.07043 1.26558 1.47485 1.25683 0.95526 1.01891 0.93696 0.85643 0.78908 0.79968 0.77856 1.19621 1.20109 1.20374 1.21034 0.91766 0.90934 1.54562 0.93979 1.17712 0.87294 0.88663 0.90567 0.96461 1.59035 1.28808 1.42851 1.04791 1.20478 1.01997 0.98689 0.90342 1.19372 0.96715 0.97390 0.87534 1.19623 0.98458 0.93876 0.88540 1.20087 1.01484 1.03022 0.87782 1.17670 0.93854 0.94671 0.88728 1.84852 1.47078 1.65984 1.31592 1.17547 0.99766 0.95340 0.82624 1.91339 1.93429 1.77635 1.48053 1.87303 1.79587 1.40631 1.14764 1.26211 0.90218 0.84351 0.89932 1.87419 1.48512 1.72637 1.15419 0.93320 0.87973 0.85193 0.79976 0.72515 0.88175 0.81261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.02 12.78 21.45 0.27 -52.75 15 2 C 0.04 2.08 5.39 84.66 0.46 2.54 15 3 Si 0.95 45.25 29.54 68.60 2.03 47.27 15 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 7 C -0.54 -31.56 8.62 25.60 0.22 -31.34 15 8 H 0.04 2.46 7.74 -2.91 -0.02 2.44 15 9 C 0.27 14.21 2.75 43.42 0.12 14.33 15 10 H 0.02 1.04 7.78 -2.39 -0.02 1.02 15 11 N -0.82 -41.58 8.42 -174.96 -1.47 -43.05 15 12 C -0.11 -4.89 4.89 -19.76 -0.10 -4.98 15 13 C 0.04 1.39 6.82 22.58 0.15 1.54 15 14 C 0.04 1.27 7.14 22.58 0.16 1.43 15 15 C -0.10 -2.83 9.99 22.43 0.22 -2.61 15 16 C 0.10 2.96 6.71 22.51 0.15 3.11 15 17 O -0.48 -11.83 13.37 -93.92 -1.26 -13.08 15 18 C 0.07 2.65 7.01 22.45 0.16 2.81 15 19 F -0.13 -5.28 14.14 44.97 0.64 -4.64 15 20 O -0.31 -8.44 11.41 -76.75 -0.88 -9.31 15 21 C 0.20 5.03 8.89 113.37 1.01 6.04 15 22 O -0.32 -12.15 11.16 -77.32 -0.86 -13.01 15 23 H 0.26 14.71 8.31 -92.70 -0.77 13.94 15 24 H 0.31 13.93 9.06 -89.69 -0.81 13.12 15 25 H 0.33 16.20 6.12 -89.69 -0.55 15.65 15 26 H 0.18 3.49 8.06 -2.91 -0.02 3.47 15 27 H 0.41 5.51 9.07 -74.06 -0.67 4.84 15 28 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 29 H 0.17 2.70 8.14 -2.39 -0.02 2.68 15 Total: -1.00 -72.83 262.77 0.24 -72.59 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.79 Total: 23.11 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 2.56 Total: -7.12 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -1.20 Total: -95.80 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -2.99 Total: -35.41 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.64 Total: -4.64 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -72.83 0.24 -72.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260137747.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.703 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds