Wall clock time and date at job start Mon Mar 30 2020 04:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46905 * 110.99566 * 2 1 4 4 C 1.46898 * 111.00216 * 123.95039 * 2 1 3 5 5 C 1.53000 * 109.46803 * 66.05041 * 4 2 1 6 6 C 1.53006 * 109.46678 * 179.97438 * 5 4 2 7 7 N 1.46901 * 109.46808 * 179.97438 * 6 5 4 8 8 C 1.47996 * 111.00329 * 293.95747 * 7 6 5 9 9 C 1.50451 * 112.82644 * 191.34206 * 8 7 6 10 10 C 1.54303 * 108.49565 * 93.72912 * 9 8 7 11 11 C 1.45883 * 112.18994 * 281.46105 * 10 9 8 12 12 H 1.09000 * 108.93992 * 300.52131 * 11 10 9 13 13 C 1.50697 * 108.94189 * 181.81603 * 11 10 9 14 14 H 1.07991 * 120.00449 * 239.72619 * 13 11 10 15 15 C 1.37885 * 119.99686 * 60.00450 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 11 18 18 H 1.48490 * 109.47339 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47239 * 120.00108 * 17 15 13 20 20 H 1.48504 * 109.46636 * 239.99667 * 17 15 13 21 21 C 1.54312 * 112.18091 * 61.12408 * 11 10 9 22 22 C 1.48002 * 110.99844 * 165.23599 * 7 6 5 23 23 H 1.09002 * 109.46848 * 296.04326 * 1 2 3 24 24 H 1.08999 * 109.47494 * 56.04767 * 1 2 3 25 25 H 1.08997 * 109.46595 * 176.05246 * 1 2 3 26 26 H 1.09001 * 109.46963 * 183.95972 * 3 2 1 27 27 H 1.09001 * 109.47063 * 303.95309 * 3 2 1 28 28 H 1.08997 * 109.47164 * 63.95245 * 3 2 1 29 29 H 1.08996 * 109.47567 * 306.04797 * 4 2 1 30 30 H 1.09008 * 109.46814 * 186.04834 * 4 2 1 31 31 H 1.09001 * 109.47342 * 60.00032 * 5 4 2 32 32 H 1.08995 * 109.47206 * 299.99671 * 5 4 2 33 33 H 1.09002 * 109.46971 * 60.00730 * 6 5 4 34 34 H 1.08995 * 109.47474 * 300.00046 * 6 5 4 35 35 H 1.09005 * 108.81418 * 70.48020 * 8 7 6 36 36 H 1.09001 * 108.81432 * 312.20895 * 8 7 6 37 37 H 1.08992 * 109.63077 * 334.02663 * 9 8 7 38 38 H 1.09001 * 109.79481 * 213.52850 * 9 8 7 39 39 H 1.09001 * 108.93956 * 160.76756 * 10 9 8 40 40 H 1.09002 * 108.94125 * 42.16230 * 10 9 8 41 41 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.63266 * 41.16350 * 21 11 10 43 43 H 1.09000 * 109.63153 * 161.76377 * 21 11 10 44 44 H 1.08997 * 108.81079 * 205.70230 * 22 7 6 45 45 H 1.08997 * 108.81077 * 323.97397 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2425 0.9703 6 6 2.1806 -3.0403 2.1549 7 7 1.8306 -4.4580 1.9946 8 6 0.3668 -4.6565 2.0844 9 6 -0.0197 -6.1060 2.1988 10 6 -0.1609 -6.4585 3.6944 11 6 1.1326 -6.6701 4.3351 12 1 1.6487 -7.4860 3.8292 13 6 0.9084 -7.0520 5.7755 14 1 1.3174 -6.4407 6.5662 15 6 0.1859 -8.1852 6.0837 16 7 -0.3123 -8.9297 5.1207 17 14 -0.0855 -8.6629 7.8691 18 1 0.5727 -7.6680 8.7533 19 1 -1.5419 -8.6948 8.1571 20 1 0.4974 -10.0063 8.1161 21 6 2.0212 -5.4096 4.2838 22 6 2.6255 -5.3072 2.9098 23 1 -0.3633 0.4512 0.9234 24 1 -0.3634 0.5739 -0.8524 25 1 -0.3632 -1.0252 -0.0707 26 1 3.0827 1.3434 -0.0710 27 1 1.5897 1.9164 -0.8525 28 1 1.7043 1.8724 0.9233 29 1 1.5612 -0.3872 2.0628 30 1 3.0799 -0.6609 1.1756 31 1 2.0660 -2.6213 0.0451 32 1 0.5474 -2.3475 0.9323 33 1 1.7464 -2.6618 3.0803 34 1 3.2648 -2.9353 2.1925 35 1 -0.1001 -4.2376 1.1930 36 1 -0.0074 -4.1230 2.9582 37 1 0.7533 -6.7278 1.7474 38 1 -0.9693 -6.2760 1.6913 39 1 -0.7553 -7.3672 3.7892 40 1 -0.6783 -5.6447 4.2024 41 1 -0.8209 -9.7267 5.3376 42 1 1.4153 -4.5259 4.4840 43 1 2.8140 -5.4899 5.0275 44 1 2.7014 -6.3077 2.4839 45 1 3.6278 -4.8877 2.9969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260149736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:55 Heat of formation + Delta-G solvation = -4.466367 kcal Electronic energy + Delta-G solvation = -19712.797835 eV Core-core repulsion = 16957.678376 eV Total energy + Delta-G solvation = -2755.119459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.81344 -37.67545 -34.88798 -32.43512 -31.39418 -30.66178 -27.78463 -27.03649 -25.31801 -24.49732 -22.95670 -22.00749 -20.76373 -19.20818 -18.71814 -16.54525 -15.86650 -15.76571 -15.35943 -14.75274 -14.68847 -14.44347 -14.03018 -13.43100 -13.10106 -12.60399 -12.55748 -12.27761 -12.18787 -12.06628 -11.92927 -11.69756 -11.43483 -11.30214 -11.10953 -10.95426 -10.94288 -10.56686 -10.42570 -10.23508 -10.14235 -9.56163 -9.46671 -8.94881 -8.65428 -8.54277 -8.23926 -7.63550 -5.95344 -4.03585 3.29264 3.37447 3.41253 3.74432 4.35717 4.44644 4.86680 4.96535 5.10695 5.20488 5.28882 5.32539 5.42519 5.46273 5.54823 5.60010 5.62329 5.66459 5.75431 5.80729 5.89725 5.93050 6.10039 6.19629 6.27931 6.37568 6.42132 6.48490 6.64039 6.75355 6.83013 6.84088 6.87535 6.93634 7.08297 7.21620 7.64217 7.65842 7.77642 7.78965 8.07654 8.29009 8.53783 9.02592 9.61494 11.08048 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.041427 B = 0.003869 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.730596 B = 7234.630511 C = 7322.452265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.055 3.945 5 C -0.111 4.111 6 C 0.061 3.939 7 N -0.549 5.549 8 C 0.071 3.929 9 C -0.125 4.125 10 C -0.109 4.109 11 C 0.048 3.952 12 H 0.025 0.975 13 C -0.512 4.512 14 H 0.052 0.948 15 C 0.058 3.942 16 N -0.891 5.891 17 Si 0.889 3.111 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.138 4.138 22 C 0.064 3.936 23 H 0.024 0.976 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.027 0.973 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.027 0.973 41 H 0.259 0.741 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.072 0.928 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 15.298 -8.975 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.073 4.073 5 C -0.149 4.149 6 C -0.068 4.068 7 N -0.275 5.275 8 C -0.056 4.056 9 C -0.163 4.163 10 C -0.147 4.147 11 C 0.030 3.970 12 H 0.043 0.957 13 C -0.550 4.550 14 H 0.071 0.929 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.177 4.177 22 C -0.063 4.063 23 H 0.042 0.958 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.871 14.760 -9.866 17.984 hybrid contribution -0.744 0.387 2.620 2.751 sum 2.127 15.146 -7.246 16.924 Atomic orbital electron populations 1.22444 0.87418 1.02706 1.00174 1.61982 1.08099 1.13511 1.43565 1.22376 1.00754 0.88996 1.00280 1.22146 1.00033 0.94287 0.90849 1.21587 1.01323 0.92434 0.99597 1.21996 0.99917 0.88699 0.96141 1.61903 1.06877 1.04932 1.53743 1.21777 0.86691 0.98096 0.98989 1.21526 1.00020 0.94563 1.00160 1.20714 1.01310 1.02436 0.90215 1.17689 0.92242 0.91267 0.95845 0.95727 1.21374 1.32873 1.08562 0.92198 0.92927 1.24977 0.95841 0.96419 0.96993 1.69838 1.36446 1.15706 1.31052 0.86585 0.77795 0.78357 0.85557 1.19924 1.21110 1.21063 1.21966 0.99819 1.00475 0.95433 1.21942 0.94913 0.97561 0.91904 0.95760 0.91620 0.90790 0.91393 0.91511 0.95840 0.95022 0.90825 0.90468 0.91938 0.95461 0.91404 0.92670 0.95323 0.91765 0.93012 0.88415 0.95405 0.93111 0.93806 0.92795 0.90988 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.32 60.07 0.56 0.76 16 2 N -0.55 -5.77 5.02 -251.25 -1.26 -7.03 16 3 C 0.02 0.21 9.57 60.07 0.57 0.78 16 4 C 0.06 0.60 4.96 -3.82 -0.02 0.58 16 5 C -0.11 -1.37 5.07 -26.73 -0.14 -1.50 16 6 C 0.06 0.87 4.88 -3.82 -0.02 0.85 16 7 N -0.55 -9.18 4.68 -235.90 -1.10 -10.29 16 8 C 0.07 1.25 4.46 -4.49 -0.02 1.23 16 9 C -0.12 -2.46 5.63 -27.32 -0.15 -2.61 16 10 C -0.11 -2.58 4.37 -29.42 -0.13 -2.71 16 11 C 0.05 1.18 1.67 -94.45 -0.16 1.03 16 12 H 0.02 0.67 7.51 -51.93 -0.39 0.28 16 13 C -0.51 -14.12 8.41 -34.44 -0.29 -14.41 16 14 H 0.05 1.45 7.71 -52.49 -0.40 1.05 16 15 C 0.06 1.61 5.28 -17.82 -0.09 1.52 16 16 N -0.89 -25.46 11.20 55.43 0.62 -24.84 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 C -0.14 -2.89 4.90 -27.32 -0.13 -3.02 16 22 C 0.06 1.15 5.16 -4.49 -0.02 1.13 16 23 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 25 H 0.07 0.74 6.47 -51.93 -0.34 0.40 16 26 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 28 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 30 H 0.07 0.75 8.06 -51.92 -0.42 0.33 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.80 5.20 -51.93 -0.27 0.53 16 33 H 0.03 0.41 7.82 -51.93 -0.41 0.00 16 34 H 0.07 0.89 7.67 -51.93 -0.40 0.50 16 35 H 0.05 0.87 6.99 -51.93 -0.36 0.51 16 36 H 0.03 0.53 6.37 -51.93 -0.33 0.20 16 37 H 0.06 1.31 7.08 -51.93 -0.37 0.94 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.10 2.62 5.72 -51.93 -0.30 2.32 16 40 H 0.03 0.66 7.52 -51.93 -0.39 0.27 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.04 0.92 6.84 -51.93 -0.35 0.57 16 43 H 0.05 1.13 7.98 -51.93 -0.41 0.72 16 44 H 0.07 1.40 6.58 -51.93 -0.34 1.05 16 45 H 0.05 0.84 7.56 -51.93 -0.39 0.44 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -28.19 331.88 -10.19 -38.38 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.39 Total: -1.24 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.04 Total: -16.39 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: -1.74 Total: -42.16 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.19 -10.19 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260149736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.912 kcal (2) G-P(sol) polarization free energy of solvation -28.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds