Wall clock time and date at job start Mon Mar 30 2020 04:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48498 * 109.46963 * 269.99614 * 3 2 1 5 5 H 1.48502 * 109.47381 * 29.99771 * 3 2 1 6 6 H 1.48500 * 109.47608 * 149.99779 * 3 2 1 7 7 C 1.37882 * 119.99602 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99484 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00054 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47064 * 299.99701 * 9 7 2 11 11 N 1.46897 * 109.46916 * 60.00452 * 9 7 2 12 12 C 1.50708 * 109.46860 * 180.02562 * 9 7 2 13 13 C 1.38285 * 119.97362 * 265.02334 * 12 9 7 14 14 C 1.38313 * 120.12526 * 179.74978 * 13 12 9 15 15 Cl 1.73605 * 119.93974 * 180.27672 * 14 13 12 16 16 C 1.38371 * 120.11738 * 0.50545 * 14 13 12 17 17 C 1.38510 * 120.01886 * 359.46980 * 16 14 13 18 18 C 1.38489 * 119.97970 * 85.00056 * 12 9 7 19 19 O 1.36530 * 131.52422 * 359.97358 * 18 12 9 20 20 C 1.43984 * 105.48435 * 162.73600 * 19 18 12 21 21 O 1.36497 * 131.52057 * 180.30035 * 17 16 14 22 22 H 0.96999 * 119.99251 * 0.02562 * 1 2 3 23 23 H 1.00892 * 111.00436 * 59.99824 * 11 9 7 24 24 H 1.00906 * 110.99752 * 183.95395 * 11 9 7 25 25 H 1.07997 * 119.93440 * 359.97438 * 13 12 9 26 26 H 1.08002 * 119.99337 * 179.75086 * 16 14 13 27 27 H 1.09003 * 110.57166 * 268.57157 * 20 19 18 28 28 H 1.08994 * 110.57218 * 145.69396 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1993 12 6 2.2303 -3.6447 0.0018 13 6 2.6012 -4.2379 -1.1910 14 6 3.5037 -5.2860 -1.1940 15 17 3.9714 -6.0224 -2.6949 16 6 4.0308 -5.7517 -0.0024 17 6 3.6635 -5.1612 1.1955 18 6 2.7585 -4.1022 1.1974 19 8 2.5622 -3.6988 2.4869 20 6 3.0387 -4.7831 3.3057 21 8 4.0338 -5.4210 2.4834 22 1 -0.4849 0.8401 -0.0004 23 1 0.9653 -2.5260 -2.0381 24 1 -0.1571 -3.4139 -1.1908 25 1 2.1881 -3.8797 -2.1224 26 1 4.7323 -6.5729 -0.0066 27 1 2.2286 -5.4759 3.5333 28 1 3.4872 -4.4018 4.2231 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260305555.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:13 Heat of formation + Delta-G solvation = -35.599192 kcal Electronic energy + Delta-G solvation = -16671.391196 eV Core-core repulsion = 13714.579841 eV Total energy + Delta-G solvation = -2956.811355 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.85460 -38.10556 -36.37203 -35.91645 -34.30334 -31.68753 -29.57489 -29.22858 -26.14200 -25.52713 -23.32043 -22.47742 -20.44229 -17.73879 -17.39373 -17.04667 -16.46556 -16.10165 -14.70340 -14.60233 -14.34831 -13.96273 -13.65654 -13.28255 -13.13881 -12.76236 -12.62583 -12.18359 -11.81201 -11.33198 -11.17254 -10.95754 -10.80226 -10.61059 -10.24553 -9.83663 -9.35173 -8.47434 -8.21192 -7.68154 -7.22942 -5.90916 -4.06021 1.32426 1.51461 2.16652 3.15217 3.33604 3.40130 3.44013 3.76352 3.82570 4.47998 4.77361 4.85710 5.07747 5.23333 5.28888 5.36570 5.61888 5.78376 6.08120 6.18668 6.30514 6.39199 6.58264 6.74394 7.35938 7.41656 7.86894 8.10863 8.53189 8.90861 9.06949 9.62346 11.13485 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.008067 C = 0.006432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.445402 B = 3470.264819 C = 4352.086304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.086 3.914 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.053 0.947 9 C 0.260 3.740 10 H 0.056 0.944 11 N -0.809 5.809 12 C -0.044 4.044 13 C -0.108 4.108 14 C -0.026 4.026 15 Cl -0.071 7.071 16 C -0.119 4.119 17 C 0.036 3.964 18 C 0.045 3.955 19 O -0.288 6.288 20 C 0.209 3.791 21 O -0.313 6.313 22 H 0.257 0.743 23 H 0.320 0.680 24 H 0.301 0.699 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.079 0.921 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.231 -11.580 1.036 12.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.121 4.121 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.072 0.928 9 C 0.150 3.850 10 H 0.074 0.926 11 N -0.335 5.335 12 C -0.048 4.048 13 C -0.127 4.127 14 C -0.053 4.053 15 Cl -0.042 7.042 16 C -0.139 4.139 17 C -0.009 4.009 18 C 0.000 4.000 19 O -0.203 6.203 20 C 0.097 3.903 21 O -0.229 6.229 22 H 0.067 0.933 23 H 0.133 0.867 24 H 0.111 0.889 25 H 0.160 0.840 26 H 0.154 0.846 27 H 0.097 0.903 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.825 -10.753 1.369 11.865 hybrid contribution 1.173 -0.103 -0.063 1.179 sum 5.998 -10.856 1.306 12.471 Atomic orbital electron populations 1.70100 1.05662 1.25842 1.46400 1.24912 0.94670 0.98547 0.94011 0.86707 0.79997 0.83758 0.78121 1.20602 1.21213 1.19999 1.20722 0.92168 0.89065 1.54839 0.92830 1.18207 0.87239 0.88182 0.91411 0.92612 1.59143 1.27923 1.42213 1.04238 1.20975 0.98230 0.98007 0.87557 1.20691 0.98116 0.95331 0.98578 1.20272 1.00897 0.97921 0.86183 1.98341 1.91539 1.82291 1.32051 1.19458 1.04575 1.02478 0.87352 1.19534 0.97970 0.97606 0.85803 1.19667 0.98898 0.95039 0.86405 1.87524 1.80587 1.38682 1.13519 1.25617 0.88098 0.84165 0.92436 1.87294 1.48320 1.73660 1.13646 0.93345 0.86693 0.88855 0.83976 0.84650 0.90347 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.27 12.77 55.43 0.71 -23.56 15 2 C 0.09 2.37 5.39 -17.82 -0.10 2.27 15 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 15 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 7 C -0.53 -14.42 8.71 -34.44 -0.30 -14.72 15 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.26 6.29 2.84 -70.01 -0.20 6.10 15 10 H 0.06 1.52 8.12 -51.93 -0.42 1.10 15 11 N -0.81 -18.11 8.13 -6.65 -0.05 -18.16 15 12 C -0.04 -0.91 4.99 -104.51 -0.52 -1.43 15 13 C -0.11 -1.94 9.05 -39.54 -0.36 -2.29 15 14 C -0.03 -0.42 6.32 -39.50 -0.25 -0.67 15 15 Cl -0.07 -0.97 28.95 -51.86 -1.50 -2.47 15 16 C -0.12 -1.89 9.84 -39.43 -0.39 -2.28 15 17 C 0.04 0.63 7.15 -39.09 -0.28 0.35 15 18 C 0.05 0.90 6.83 -39.09 -0.27 0.64 15 19 O -0.29 -5.61 11.40 -45.79 -0.52 -6.13 15 20 C 0.21 2.91 8.89 101.05 0.90 3.81 15 21 O -0.31 -5.03 11.40 -45.68 -0.52 -5.55 15 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 23 H 0.32 6.72 7.20 -39.30 -0.28 6.44 15 24 H 0.30 5.93 9.06 -39.29 -0.36 5.58 15 25 H 0.14 2.40 6.28 -52.49 -0.33 2.07 15 26 H 0.14 1.82 8.06 -52.49 -0.42 1.40 15 27 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 28 H 0.13 1.34 8.14 -51.93 -0.42 0.91 15 LS Contribution 264.58 15.07 3.99 3.99 Total: -1.00 -30.08 264.58 -6.88 -36.96 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -2.20 Total: 6.86 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.76 Total: -8.23 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.65 Total: -41.72 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -1.04 Total: -11.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.08 -6.88 -36.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260305555.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.364 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds