Wall clock time and date at job start Mon Mar 30 2020 04:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48506 * 109.47064 * 240.00155 * 3 2 1 5 5 H 1.48506 * 109.47000 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47398 * 120.00106 * 3 2 1 7 7 C 1.37877 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99851 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47087 * 300.00203 * 9 7 2 11 11 N 1.46905 * 109.47121 * 60.00006 * 9 7 2 12 12 C 1.50698 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.38265 * 119.97736 * 264.72397 * 12 9 7 14 14 C 1.38210 * 120.15127 * 179.83178 * 13 12 9 15 15 C 1.38375 * 120.13331 * 0.40269 * 14 13 12 16 16 Cl 1.73587 * 120.00064 * 179.81273 * 15 14 13 17 17 C 1.38605 * 120.00177 * 359.83162 * 15 14 13 18 18 C 1.38544 * 119.96943 * 85.00169 * 12 9 7 19 19 O 1.36502 * 131.52912 * 359.97438 * 18 12 9 20 20 C 1.43991 * 105.48814 * 197.28537 * 19 18 12 21 21 O 1.36526 * 131.53387 * 179.97438 * 17 15 14 22 22 H 0.97003 * 119.99846 * 0.02562 * 1 2 3 23 23 H 1.00901 * 110.99869 * 60.00289 * 11 9 7 24 24 H 1.00896 * 110.99543 * 183.95412 * 11 9 7 25 25 H 1.08003 * 119.92499 * 0.02562 * 13 12 9 26 26 H 1.08002 * 119.93856 * 180.19271 * 14 13 12 27 27 H 1.08992 * 110.57390 * 91.44271 * 20 19 18 28 28 H 1.09000 * 110.56601 * 214.16337 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 7 0.4060 -2.5778 -1.1974 12 6 2.2304 -3.6445 0.0015 13 6 2.5947 -4.2417 -1.1912 14 6 3.4952 -5.2902 -1.1959 15 6 4.0297 -5.7522 -0.0061 16 17 5.1568 -7.0724 -0.0156 17 6 3.6650 -5.1611 1.1933 18 6 2.7606 -4.1021 1.1969 19 8 2.5661 -3.6987 2.4864 20 6 3.6680 -4.2495 3.2319 21 8 4.0375 -5.4209 2.4808 22 1 -0.4850 0.8401 -0.0004 23 1 0.9637 -2.5270 -2.0367 24 1 -0.1578 -3.4144 -1.1880 25 1 2.1770 -3.8860 -2.1215 26 1 3.7798 -5.7521 -2.1298 27 1 4.4964 -3.5422 3.2700 28 1 3.3513 -4.5213 4.2388 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260307607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:17 Heat of formation + Delta-G solvation = -56.495227 kcal Electronic energy + Delta-G solvation = -16709.060311 eV Core-core repulsion = 13751.342836 eV Total energy + Delta-G solvation = -2957.717475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.16534 -39.41780 -37.88582 -37.07170 -35.99963 -33.60694 -31.17315 -30.47057 -28.03836 -26.75712 -24.88475 -23.96950 -22.03701 -19.12826 -18.65742 -18.51216 -18.38930 -17.37749 -16.60324 -16.13144 -15.81385 -15.39913 -15.09396 -14.85271 -14.41530 -14.30936 -13.92314 -13.82159 -13.15707 -12.91068 -12.73145 -12.61839 -12.43905 -12.02749 -11.86855 -11.69898 -11.24296 -10.55376 -9.48508 -9.14564 -8.94890 -7.98280 -6.20262 0.02686 0.08860 0.99641 1.44759 1.45080 1.52627 1.74997 2.40485 2.50655 2.59314 3.24863 3.51114 3.80579 3.88562 4.06733 4.16894 4.22484 4.38215 4.44469 4.76586 4.89473 5.11221 5.16099 5.39788 5.56880 5.73657 6.03324 6.16111 6.63069 7.08865 7.26181 7.51654 9.04931 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.006817 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.831638 B = 4106.280272 C = 4483.515592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.038 3.962 3 Si 0.947 3.053 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.044 0.956 9 C 0.267 3.733 10 H 0.008 0.992 11 N -0.818 5.818 12 C -0.077 4.077 13 C -0.105 4.105 14 C -0.087 4.087 15 C -0.041 4.041 16 Cl -0.052 7.052 17 C 0.027 3.973 18 C 0.026 3.974 19 O -0.322 6.322 20 C 0.203 3.797 21 O -0.311 6.311 22 H 0.256 0.744 23 H 0.330 0.670 24 H 0.316 0.684 25 H 0.158 0.842 26 H 0.179 0.821 27 H 0.096 0.904 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.392 -11.162 0.024 13.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.062 0.938 9 C 0.157 3.843 10 H 0.025 0.975 11 N -0.347 5.347 12 C -0.080 4.080 13 C -0.123 4.123 14 C -0.105 4.105 15 C -0.069 4.069 16 Cl -0.023 7.023 17 C -0.019 4.019 18 C -0.019 4.019 19 O -0.239 6.239 20 C 0.092 3.908 21 O -0.227 6.227 22 H 0.065 0.935 23 H 0.144 0.856 24 H 0.128 0.872 25 H 0.176 0.824 26 H 0.196 0.804 27 H 0.113 0.887 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.903 -10.535 0.510 13.180 hybrid contribution 0.907 0.122 0.364 0.985 sum 8.809 -10.413 0.875 13.668 Atomic orbital electron populations 1.70212 1.06999 1.26529 1.47596 1.25634 0.95415 1.01673 0.93882 0.85816 0.78520 0.79693 0.78665 1.19441 1.20995 1.20229 1.20949 0.91812 0.90730 1.54364 0.93810 1.17687 0.87414 0.89012 0.90203 0.97462 1.58889 1.28287 1.43488 1.04013 1.20905 0.99871 0.97624 0.89616 1.20957 0.98375 0.95749 0.97228 1.21122 0.96127 0.96632 0.96657 1.19858 1.00024 0.96240 0.90743 1.98341 1.59588 1.45486 1.98858 1.19569 0.99111 0.97224 0.85973 1.19681 0.99616 0.96403 0.86193 1.87423 1.47085 1.73051 1.16332 1.26096 0.87354 0.82188 0.95154 1.87309 1.79922 1.40103 1.15402 0.93468 0.85565 0.87243 0.82415 0.80361 0.88661 0.81678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.04 12.77 21.45 0.27 -50.77 15 2 C 0.04 2.10 5.39 84.65 0.46 2.55 15 3 Si 0.95 43.36 29.54 68.60 2.03 45.39 15 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 15 7 C -0.54 -29.44 8.71 25.60 0.22 -29.22 15 8 H 0.04 2.40 7.74 -2.91 -0.02 2.37 15 9 C 0.27 13.23 2.85 43.42 0.12 13.35 15 10 H 0.01 0.44 8.12 -2.39 -0.02 0.42 15 11 N -0.82 -36.53 8.13 -174.94 -1.42 -37.95 15 12 C -0.08 -3.17 4.99 -19.79 -0.10 -3.27 15 13 C -0.10 -3.39 9.26 22.27 0.21 -3.19 15 14 C -0.09 -2.38 9.82 22.30 0.22 -2.16 15 15 C -0.04 -1.26 6.33 22.39 0.14 -1.12 15 16 Cl -0.05 -1.33 28.96 -2.72 -0.08 -1.41 15 17 C 0.03 0.94 6.94 22.60 0.16 1.10 15 18 C 0.03 1.07 6.83 22.59 0.15 1.22 15 19 O -0.32 -12.99 11.39 -76.07 -0.87 -13.86 15 20 C 0.20 5.80 8.89 113.37 1.01 6.81 15 21 O -0.31 -10.06 11.40 -76.35 -0.87 -10.93 15 22 H 0.26 14.27 8.31 -92.71 -0.77 13.50 15 23 H 0.33 13.32 7.20 -89.69 -0.65 12.67 15 24 H 0.32 12.42 9.06 -89.70 -0.81 11.61 15 25 H 0.16 4.48 6.28 -2.91 -0.02 4.47 15 26 H 0.18 3.45 8.06 -2.91 -0.02 3.43 15 27 H 0.10 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.17 3.30 8.14 -2.39 -0.02 3.28 15 Total: -1.00 -65.82 264.56 1.42 -64.40 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.23 Total: 19.06 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 2.59 Total: -13.92 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -1.15 Total: -88.72 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.74 Total: -24.79 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -65.82 1.42 -64.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260307607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.906 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds