Wall clock time and date at job start Mon Mar 30 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48063 * 110.99783 * 2 1 4 4 C 1.54635 * 101.84429 * 147.82398 * 3 2 1 5 5 N 1.47511 * 102.75536 * 335.47311 * 4 3 2 6 6 C 1.36011 * 108.67535 * 15.23476 * 5 4 3 7 7 C 1.41894 * 118.08587 * 181.21671 * 6 5 4 8 8 C 1.40994 * 120.79161 * 179.31828 * 7 6 5 9 9 H 1.08004 * 119.99798 * 305.33483 * 8 7 6 10 10 C 1.39729 * 120.00015 * 125.33562 * 8 7 6 11 11 N 1.31065 * 119.99612 * 170.09218 * 10 8 7 12 12 Si 1.86793 * 120.00101 * 350.09410 * 10 8 7 13 13 H 1.48499 * 109.47450 * 95.81675 * 12 10 8 14 14 H 1.48504 * 109.47052 * 215.81749 * 12 10 8 15 15 H 1.48504 * 109.47205 * 335.81459 * 12 10 8 16 16 C 1.41409 * 118.42491 * 359.29979 * 7 6 5 17 17 Cl 1.73601 * 120.19836 * 180.10666 * 16 7 6 18 18 N 1.31740 * 119.60948 * 0.08121 * 16 7 6 19 19 C 1.33347 * 121.39039 * 0.18326 * 18 16 7 20 20 O 1.21900 * 118.99701 * 180.46731 * 19 18 16 21 21 H 1.09003 * 109.47054 * 43.32229 * 1 2 3 22 22 H 1.08998 * 109.46942 * 163.32582 * 1 2 3 23 23 H 1.09004 * 109.47121 * 283.32212 * 1 2 3 24 24 H 1.09003 * 110.95580 * 29.68886 * 3 2 1 25 25 H 1.08999 * 110.98852 * 265.97649 * 3 2 1 26 26 H 1.09000 * 110.75481 * 217.15075 * 4 3 2 27 27 H 1.09004 * 110.75537 * 93.79097 * 4 3 2 28 28 H 0.97004 * 119.99520 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9996 1.3823 0.0000 4 6 3.3092 1.2196 0.8059 5 7 3.0414 0.0219 1.6243 6 6 1.9583 -0.6221 1.1123 7 6 1.5074 -1.7965 1.7687 8 6 0.3816 -2.5010 1.2952 9 1 -0.5591 -1.9877 1.1602 10 6 0.4829 -3.8631 1.0005 11 7 -0.5975 -4.5611 0.7486 12 14 2.1578 -4.6891 0.9657 13 1 2.4194 -5.3335 2.2778 14 1 2.1800 -5.7185 -0.1044 15 1 3.2059 -3.6721 0.6960 16 6 2.2142 -2.2439 2.9088 17 17 1.7042 -3.6768 3.7457 18 7 3.2623 -1.5671 3.3320 19 6 3.6729 -0.4618 2.7093 20 8 4.6534 0.1256 3.1332 21 1 -0.3633 0.7477 -0.7051 22 1 -0.3633 -0.9844 -0.2949 23 1 -0.3633 0.2368 1.0000 24 1 1.3137 2.0631 0.5042 25 1 2.2061 1.7212 -1.0152 26 1 3.4835 2.0893 1.4395 27 1 4.1547 1.0507 0.1390 28 1 -0.5271 -5.5066 0.5437 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280307.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:21 Heat of formation + Delta-G solvation = 17.793212 kcal Electronic energy + Delta-G solvation = -17393.017450 eV Core-core repulsion = 14470.814115 eV Total energy + Delta-G solvation = -2922.203335 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.22023 -39.87288 -38.47677 -36.99777 -35.78144 -34.76103 -32.56691 -30.70403 -28.10720 -26.14320 -24.75016 -24.24238 -22.65670 -19.73378 -19.57273 -18.34051 -17.94588 -17.27725 -16.68961 -16.09827 -16.09122 -15.47744 -15.10373 -14.95615 -14.58439 -14.32164 -13.83678 -13.55535 -13.13731 -13.01108 -12.86267 -12.55679 -12.28845 -12.07949 -11.85796 -11.57803 -11.20551 -10.83182 -10.62813 -10.26768 -8.96634 -8.53894 -6.32660 -0.49308 0.57694 0.66042 1.27071 1.34227 1.40160 1.49757 2.19361 2.45845 2.61547 2.98208 3.17707 3.56489 3.69294 3.93973 4.15326 4.39198 4.44685 4.54492 4.64584 4.67396 4.77917 5.01512 5.20552 5.53327 5.66218 5.82854 6.25237 6.56170 6.74929 7.01911 7.15222 8.49838 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.012450 C = 0.009177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.826267 B = 2248.400137 C = 3050.458106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.456 5.456 3 C 0.037 3.963 4 C 0.075 3.925 5 N -0.530 5.530 6 C 0.331 3.669 7 C -0.094 4.094 8 C -0.472 4.472 9 H 0.097 0.903 10 C 0.090 3.910 11 N -0.861 5.861 12 Si 0.878 3.122 13 H -0.242 1.242 14 H -0.275 1.275 15 H -0.287 1.287 16 C 0.258 3.742 17 Cl -0.007 7.007 18 N -0.608 5.608 19 C 0.634 3.366 20 O -0.609 6.609 21 H 0.117 0.883 22 H 0.088 0.912 23 H 0.043 0.957 24 H 0.104 0.896 25 H 0.158 0.842 26 H 0.116 0.884 27 H 0.108 0.892 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 9.420 -5.575 10.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.170 5.170 3 C -0.087 4.087 4 C -0.046 4.046 5 N -0.249 5.249 6 C 0.109 3.891 7 C -0.106 4.106 8 C -0.506 4.506 9 H 0.115 0.885 10 C -0.122 4.122 11 N -0.492 5.492 12 Si 0.704 3.296 13 H -0.166 1.166 14 H -0.201 1.201 15 H -0.212 1.212 16 C 0.081 3.919 17 Cl 0.022 6.978 18 N -0.352 5.352 19 C 0.336 3.664 20 O -0.492 6.492 21 H 0.135 0.865 22 H 0.106 0.894 23 H 0.062 0.938 24 H 0.122 0.878 25 H 0.176 0.824 26 H 0.134 0.866 27 H 0.126 0.874 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.218 9.214 -5.066 10.517 hybrid contribution 0.267 -0.584 0.210 0.676 sum 0.485 8.630 -4.857 9.915 Atomic orbital electron populations 1.22932 0.80508 1.06171 1.02407 1.59572 1.13254 1.15411 1.28800 1.24169 0.93239 0.86447 1.04856 1.23381 1.00987 0.86425 0.93798 1.47854 1.26574 1.25174 1.25309 1.21802 0.86549 0.94938 0.85849 1.17310 1.00955 0.96930 0.95374 1.18340 0.95229 0.93474 1.43547 0.88524 1.25769 0.97489 0.96993 0.91939 1.69671 1.29635 1.09323 1.40603 0.86856 0.82498 0.80063 0.80135 1.16573 1.20099 1.21220 1.23503 0.90907 0.88633 0.88890 1.98351 1.88964 1.32970 1.77540 1.68815 1.20349 1.10370 1.35656 1.17240 0.85556 0.84323 0.79256 1.90813 1.29107 1.61368 1.67904 0.86453 0.89378 0.93837 0.87793 0.82398 0.86594 0.87385 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 8.06 127.69 1.03 1.65 15 2 N -0.46 -13.11 5.28 -716.70 -3.78 -16.90 15 3 C 0.04 0.65 6.91 86.64 0.60 1.25 15 4 C 0.07 1.86 7.60 86.74 0.66 2.52 15 5 N -0.53 -20.70 3.12 -646.78 -2.02 -22.72 15 6 C 0.33 12.87 6.42 133.47 0.86 13.72 15 7 C -0.09 -4.28 4.35 -20.92 -0.09 -4.37 15 8 C -0.47 -22.26 7.37 23.31 0.17 -22.08 15 9 H 0.10 4.56 6.03 -2.91 -0.02 4.54 15 10 C 0.09 4.43 4.82 85.17 0.41 4.84 15 11 N -0.86 -43.64 13.94 21.80 0.30 -43.34 15 12 Si 0.88 41.00 24.22 68.60 1.66 42.67 15 13 H -0.24 -10.91 5.75 99.48 0.57 -10.33 15 14 H -0.27 -12.35 7.11 99.48 0.71 -11.64 15 15 H -0.29 -14.40 7.02 99.48 0.70 -13.70 15 16 C 0.26 12.48 5.98 85.49 0.51 12.99 15 17 Cl -0.01 -0.31 23.30 -2.72 -0.06 -0.37 15 18 N -0.61 -31.10 10.42 -315.28 -3.28 -34.38 15 19 C 0.63 30.89 8.49 179.57 1.52 32.41 15 20 O -0.61 -32.14 17.73 -4.99 -0.09 -32.23 15 21 H 0.12 1.85 7.99 -2.39 -0.02 1.83 15 22 H 0.09 2.81 5.94 -2.39 -0.01 2.80 15 23 H 0.04 1.15 7.86 -2.39 -0.02 1.14 15 24 H 0.10 1.35 7.87 -2.39 -0.02 1.33 15 25 H 0.16 1.51 8.14 -2.39 -0.02 1.49 15 26 H 0.12 2.52 8.14 -2.39 -0.02 2.50 15 27 H 0.11 2.43 8.14 -2.38 -0.02 2.41 15 28 H 0.28 13.48 8.30 -92.71 -0.77 12.71 15 Total: -1.00 -68.73 246.30 -0.54 -69.27 By element: Atomic # 1 Polarization: -5.98 SS G_CDS: 1.06 Total: -4.92 kcal Atomic # 6 Polarization: 37.25 SS G_CDS: 5.67 Total: 42.92 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -8.78 Total: -117.33 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.09 Total: -32.23 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.66 Total: 42.67 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.06 Total: -0.37 kcal Total: -68.73 -0.54 -69.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280307.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.060 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds