Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31063 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48503 * 109.47087 * 89.99673 * 3 2 1 5 5 H 1.48500 * 109.47597 * 210.00075 * 3 2 1 6 6 H 1.48505 * 109.47269 * 330.00123 * 3 2 1 7 7 C 1.39729 * 120.00034 * 180.27359 * 2 1 3 8 8 H 1.08004 * 120.00234 * 198.67571 * 7 2 1 9 9 C 1.40989 * 119.99861 * 18.67632 * 7 2 1 10 10 C 1.41356 * 120.74842 * 218.11010 * 9 7 2 11 11 Cl 1.73604 * 120.33378 * 359.17559 * 10 9 7 12 12 N 1.31762 * 119.33700 * 179.15943 * 10 9 7 13 13 C 1.33141 * 121.40302 * 358.78317 * 12 10 9 14 14 O 1.21901 * 118.83942 * 179.14426 * 13 12 10 15 15 N 1.35092 * 122.31306 * 359.16109 * 13 12 10 16 16 C 1.35493 * 119.82934 * 4.79481 * 15 13 12 17 17 N 1.35829 * 123.73900 * 170.68909 * 16 15 13 18 18 C 1.46541 * 113.07722 * 26.66714 * 17 16 15 19 19 C 1.53515 * 108.21524 * 306.47621 * 18 17 16 20 20 C 1.46622 * 117.99399 * 186.25281 * 15 13 12 21 21 H 0.97002 * 120.00065 * 354.05587 * 1 2 3 22 22 H 1.00893 * 111.24474 * 260.95600 * 17 16 15 23 23 H 1.09004 * 109.71201 * 186.79725 * 18 17 16 24 24 H 1.09004 * 109.72035 * 66.16001 * 18 17 16 25 25 H 1.08997 * 109.81787 * 305.81388 * 19 18 17 26 26 H 1.08994 * 109.87274 * 184.92582 * 19 18 17 27 27 H 1.08998 * 109.41389 * 321.10431 * 20 15 13 28 28 H 1.08996 * 109.41190 * 80.95873 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 2.4921 2.0464 1.4001 5 1 3.5422 1.4402 -0.7000 6 1 1.4421 2.6527 -0.7000 7 6 2.0093 -1.2101 -0.0058 8 1 3.0467 -1.2362 0.2936 9 6 1.3600 -2.3970 -0.4024 10 6 1.6253 -3.6202 0.2546 11 17 2.7758 -3.6864 1.5530 12 7 0.9903 -4.7095 -0.1280 13 6 0.0861 -4.6785 -1.1048 14 8 -0.4619 -5.7171 -1.4319 15 7 -0.2450 -3.5367 -1.7463 16 6 0.4202 -2.3897 -1.4674 17 7 0.2831 -1.2445 -2.1850 18 6 -1.0189 -1.1347 -2.8484 19 6 -1.2423 -2.4056 -3.6802 20 6 -1.3499 -3.5837 -2.7090 21 1 -0.4850 0.8355 0.0870 22 1 1.0367 -1.1355 -2.8470 23 1 -1.0264 -0.2619 -3.5013 24 1 -1.8062 -1.0417 -2.1003 25 1 -0.4000 -2.5585 -4.3548 26 1 -2.1641 -2.3150 -4.2547 27 1 -1.3045 -4.5188 -3.2672 28 1 -2.2984 -3.5263 -2.1750 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261284523.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = 18.045712 kcal Electronic energy + Delta-G solvation = -17371.673214 eV Core-core repulsion = 14449.480828 eV Total energy + Delta-G solvation = -2922.192386 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79893 -37.45220 -36.41339 -35.13491 -33.83266 -32.67818 -31.41526 -29.34838 -25.19102 -24.81262 -23.64350 -21.74625 -20.27464 -18.11240 -17.01992 -16.76371 -15.74418 -15.36907 -15.02912 -14.84484 -14.15908 -13.75799 -13.26512 -13.00571 -12.68971 -12.49746 -11.96564 -11.64110 -11.23279 -11.11735 -10.84619 -10.75187 -10.50555 -10.32395 -10.03019 -9.56221 -9.37495 -9.10047 -8.69659 -8.19656 -6.91260 -6.69754 -4.30120 1.61173 2.65396 2.82767 3.10956 3.15297 3.19521 3.54523 3.99500 4.56388 4.64664 4.91261 4.98585 5.16372 5.32171 5.56517 5.71408 5.84999 5.89508 6.02674 6.24461 6.30267 6.48667 6.94541 7.19877 7.37571 7.78437 8.02084 8.24102 8.59306 8.82485 8.97585 9.30353 10.30033 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.012886 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.581721 B = 2172.461244 C = 3575.854419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.098 3.902 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.264 1.264 6 H -0.281 1.281 7 C -0.448 4.448 8 H 0.085 0.915 9 C -0.020 4.020 10 C 0.272 3.728 11 Cl -0.039 7.039 12 N -0.577 5.577 13 C 0.619 3.381 14 O -0.595 6.595 15 N -0.507 5.507 16 C 0.263 3.737 17 N -0.562 5.562 18 C 0.061 3.939 19 C -0.172 4.172 20 C 0.101 3.899 21 H 0.275 0.725 22 H 0.349 0.651 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 4.449 -5.224 6.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.123 4.123 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.188 1.188 6 H -0.206 1.206 7 C -0.479 4.479 8 H 0.103 0.897 9 C -0.030 4.030 10 C 0.090 3.910 11 Cl -0.011 7.011 12 N -0.317 5.317 13 C 0.321 3.679 14 O -0.478 6.478 15 N -0.228 5.228 16 C 0.047 3.953 17 N -0.194 5.194 18 C -0.068 4.068 19 C -0.212 4.212 20 C -0.022 4.022 21 H 0.086 0.914 22 H 0.180 0.820 23 H 0.097 0.903 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.102 0.898 27 H 0.109 0.891 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.846 3.468 -4.701 5.903 hybrid contribution 0.189 1.124 -0.748 1.363 sum -0.657 4.592 -5.449 7.156 Atomic orbital electron populations 1.69769 1.07666 1.28851 1.32602 1.25428 0.94276 1.00035 0.92553 0.86402 0.80524 0.81361 0.78861 1.20077 1.18764 1.20593 1.18739 0.98474 0.90127 1.40571 0.89735 1.17410 0.99733 0.92492 0.93366 1.23212 0.89089 0.91003 0.87695 1.98321 1.57006 1.98528 1.47200 1.68631 1.14599 1.29975 1.18495 1.17313 0.84641 0.82645 0.83294 1.90815 1.58013 1.30320 1.68639 1.46564 1.30900 1.09441 1.35859 1.18722 0.99903 0.81207 0.95436 1.55362 1.04005 1.31959 1.28032 1.22055 0.92489 0.95670 0.96577 1.22655 1.03325 0.96924 0.98306 1.21622 0.89454 1.00022 0.91136 0.91446 0.81961 0.90274 0.89733 0.91273 0.89752 0.89111 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.29 11.23 55.54 0.62 -16.66 15 2 C 0.10 2.14 4.36 -17.32 -0.08 2.06 15 3 Si 0.90 17.01 29.60 -169.99 -5.03 11.98 15 4 H -0.28 -5.30 7.11 56.52 0.40 -4.90 15 5 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 6 H -0.28 -5.26 7.11 56.52 0.40 -4.86 15 7 C -0.45 -10.28 8.10 -37.98 -0.31 -10.59 15 8 H 0.08 1.91 7.57 -52.48 -0.40 1.51 15 9 C -0.02 -0.46 5.41 -106.21 -0.57 -1.04 15 10 C 0.27 6.53 7.39 -16.40 -0.12 6.41 15 11 Cl -0.04 -0.81 28.08 -51.86 -1.46 -2.26 15 12 N -0.58 -14.91 10.41 -13.34 -0.14 -15.05 15 13 C 0.62 15.90 8.27 -88.08 -0.73 15.17 15 14 O -0.60 -16.44 16.59 5.01 0.08 -16.36 15 15 N -0.51 -11.17 2.99 -120.18 -0.36 -11.53 15 16 C 0.26 5.73 6.19 -154.18 -0.95 4.78 15 17 N -0.56 -10.40 3.20 -59.37 -0.19 -10.59 15 18 C 0.06 0.92 6.67 -3.75 -0.03 0.90 15 19 C -0.17 -2.33 6.29 -26.43 -0.17 -2.49 15 20 C 0.10 1.79 6.06 -3.94 -0.02 1.77 15 21 H 0.27 5.83 8.31 -40.82 -0.34 5.49 15 22 H 0.35 5.86 8.82 -39.30 -0.35 5.51 15 23 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 24 H 0.08 1.43 8.13 -51.93 -0.42 1.01 15 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 27 H 0.09 1.62 7.43 -51.93 -0.39 1.24 15 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 255.00 15.07 3.84 3.84 Total: -1.00 -28.88 255.00 -7.98 -36.86 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -2.38 Total: 2.81 kcal Atomic # 6 Polarization: 19.94 SS G_CDS: -2.98 Total: 16.96 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.06 Total: -53.83 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.08 Total: -16.36 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.46 Total: -2.26 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.88 -7.98 -36.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284523.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.910 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds