Wall clock time and date at job start Mon Mar 30 2020 04:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31063 * 1 3 3 Si 1.86800 * 120.00179 * 2 1 4 4 H 1.48503 * 109.47087 * 89.99673 * 3 2 1 5 5 H 1.48500 * 109.47597 * 210.00075 * 3 2 1 6 6 H 1.48505 * 109.47269 * 330.00123 * 3 2 1 7 7 C 1.39729 * 120.00034 * 180.27359 * 2 1 3 8 8 H 1.08004 * 120.00234 * 198.67571 * 7 2 1 9 9 C 1.40989 * 119.99861 * 18.67632 * 7 2 1 10 10 C 1.41356 * 120.74842 * 218.11010 * 9 7 2 11 11 Cl 1.73604 * 120.33378 * 359.17559 * 10 9 7 12 12 N 1.31762 * 119.33700 * 179.15943 * 10 9 7 13 13 C 1.33141 * 121.40302 * 358.78317 * 12 10 9 14 14 O 1.21901 * 118.83942 * 179.14426 * 13 12 10 15 15 N 1.35092 * 122.31306 * 359.16109 * 13 12 10 16 16 C 1.35493 * 119.82934 * 4.79481 * 15 13 12 17 17 N 1.35829 * 123.73900 * 170.68909 * 16 15 13 18 18 C 1.46541 * 113.07722 * 26.66714 * 17 16 15 19 19 C 1.53515 * 108.21524 * 306.47621 * 18 17 16 20 20 C 1.46622 * 117.99399 * 186.25281 * 15 13 12 21 21 H 0.97002 * 120.00065 * 354.05587 * 1 2 3 22 22 H 1.00893 * 111.24474 * 260.95600 * 17 16 15 23 23 H 1.09004 * 109.71201 * 186.79725 * 18 17 16 24 24 H 1.09004 * 109.72035 * 66.16001 * 18 17 16 25 25 H 1.08997 * 109.81787 * 305.81388 * 19 18 17 26 26 H 1.08994 * 109.87274 * 184.92582 * 19 18 17 27 27 H 1.08998 * 109.41389 * 321.10431 * 20 15 13 28 28 H 1.08996 * 109.41190 * 80.95873 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 2.4921 2.0464 1.4001 5 1 3.5422 1.4402 -0.7000 6 1 1.4421 2.6527 -0.7000 7 6 2.0093 -1.2101 -0.0058 8 1 3.0467 -1.2362 0.2936 9 6 1.3600 -2.3970 -0.4024 10 6 1.6253 -3.6202 0.2546 11 17 2.7758 -3.6864 1.5530 12 7 0.9903 -4.7095 -0.1280 13 6 0.0861 -4.6785 -1.1048 14 8 -0.4619 -5.7171 -1.4319 15 7 -0.2450 -3.5367 -1.7463 16 6 0.4202 -2.3897 -1.4674 17 7 0.2831 -1.2445 -2.1850 18 6 -1.0189 -1.1347 -2.8484 19 6 -1.2423 -2.4056 -3.6802 20 6 -1.3499 -3.5837 -2.7090 21 1 -0.4850 0.8355 0.0870 22 1 1.0367 -1.1355 -2.8470 23 1 -1.0264 -0.2619 -3.5013 24 1 -1.8062 -1.0417 -2.1003 25 1 -0.4000 -2.5585 -4.3548 26 1 -2.1641 -2.3150 -4.2547 27 1 -1.3045 -4.5188 -3.2672 28 1 -2.2984 -3.5263 -2.1750 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261284523.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:48 Heat of formation + Delta-G solvation = -1.258792 kcal Electronic energy + Delta-G solvation = -17372.510320 eV Core-core repulsion = 14449.480828 eV Total energy + Delta-G solvation = -2923.029492 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.53373 -39.12731 -38.14030 -36.82104 -35.59864 -34.33477 -32.94035 -31.04371 -26.78379 -26.42765 -25.23790 -23.53452 -21.69103 -19.82691 -18.72730 -18.46692 -17.40176 -17.11026 -16.55408 -16.45015 -15.76450 -15.38318 -14.83586 -14.31191 -14.16928 -14.12718 -13.70447 -13.25254 -12.75085 -12.53609 -12.37278 -12.19820 -12.05409 -11.90404 -11.68553 -11.36851 -11.08656 -10.84397 -10.43576 -9.84311 -8.64983 -8.37567 -6.05260 -0.15875 0.94698 1.07266 1.60867 1.61503 1.69712 1.85244 2.42821 2.81609 3.11599 3.37676 3.62342 3.79122 3.99252 4.09822 4.35404 4.52996 4.55104 4.64378 4.80142 4.89125 5.08952 5.27639 5.49606 5.70581 6.24812 6.37888 6.53037 6.82302 7.09854 7.16823 7.46680 8.63903 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.017846 B = 0.012886 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.581721 B = 2172.461244 C = 3575.854419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.074 3.926 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.262 1.262 6 H -0.273 1.273 7 C -0.465 4.465 8 H 0.082 0.918 9 C -0.043 4.043 10 C 0.239 3.761 11 Cl -0.023 7.023 12 N -0.609 5.609 13 C 0.597 3.403 14 O -0.634 6.634 15 N -0.502 5.502 16 C 0.297 3.703 17 N -0.568 5.568 18 C 0.060 3.940 19 C -0.153 4.153 20 C 0.088 3.912 21 H 0.281 0.719 22 H 0.367 0.633 23 H 0.117 0.883 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.541 6.893 -6.923 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.790 3.210 4 H -0.208 1.208 5 H -0.186 1.186 6 H -0.198 1.198 7 C -0.496 4.496 8 H 0.100 0.900 9 C -0.053 4.053 10 C 0.061 3.939 11 Cl 0.005 6.995 12 N -0.352 5.352 13 C 0.299 3.701 14 O -0.520 6.520 15 N -0.220 5.220 16 C 0.077 3.923 17 N -0.201 5.201 18 C -0.068 4.068 19 C -0.193 4.193 20 C -0.034 4.034 21 H 0.092 0.908 22 H 0.200 0.800 23 H 0.136 0.864 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.144 0.856 27 H 0.106 0.894 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.180 5.952 -6.416 8.831 hybrid contribution 0.228 0.493 -0.276 0.609 sum -0.953 6.445 -6.691 9.339 Atomic orbital electron populations 1.69810 1.08627 1.29899 1.32890 1.25951 0.94776 1.02076 0.91717 0.85444 0.79397 0.77855 0.78313 1.20790 1.18585 1.19824 1.18815 0.98460 0.90494 1.41796 0.90009 1.17775 1.00442 0.92798 0.94276 1.23331 0.90495 0.91049 0.89040 1.98299 1.56307 1.98509 1.46345 1.68490 1.15858 1.31283 1.19552 1.17440 0.85264 0.83210 0.84158 1.90755 1.59647 1.31502 1.70113 1.46737 1.31333 1.08543 1.35376 1.19111 0.97056 0.81617 0.94490 1.55319 1.06416 1.29453 1.28960 1.22206 0.89837 0.98068 0.96704 1.22606 1.06025 0.93492 0.97133 1.22024 0.87992 1.02200 0.91182 0.90844 0.80008 0.86444 0.91498 0.90068 0.85613 0.89406 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -34.20 11.23 21.80 0.24 -33.96 15 2 C 0.07 3.10 4.36 85.17 0.37 3.47 15 3 Si 0.97 33.28 29.60 68.60 2.03 35.31 15 4 H -0.28 -10.02 7.11 99.48 0.71 -9.31 15 5 H -0.26 -8.90 7.11 99.48 0.71 -8.20 15 6 H -0.27 -9.06 7.11 99.48 0.71 -8.35 15 7 C -0.47 -20.99 8.10 23.31 0.19 -20.80 15 8 H 0.08 3.66 7.57 -2.91 -0.02 3.63 15 9 C -0.04 -2.01 5.41 -20.90 -0.11 -2.12 15 10 C 0.24 11.72 7.39 85.47 0.63 12.35 15 11 Cl -0.02 -0.98 28.08 -2.72 -0.08 -1.05 15 12 N -0.61 -32.51 10.41 -315.15 -3.28 -35.79 15 13 C 0.60 31.42 8.27 179.46 1.48 32.91 15 14 O -0.63 -36.10 16.59 -4.99 -0.08 -36.19 15 15 N -0.50 -21.90 2.99 -652.10 -1.95 -23.85 15 16 C 0.30 12.59 6.19 133.89 0.83 13.42 15 17 N -0.57 -19.42 3.20 -341.74 -1.09 -20.51 15 18 C 0.06 1.56 6.67 86.54 0.58 2.14 15 19 C -0.15 -3.50 6.29 30.79 0.19 -3.31 15 20 C 0.09 2.97 6.06 86.38 0.52 3.49 15 21 H 0.28 11.32 8.31 -92.71 -0.77 10.55 15 22 H 0.37 11.03 8.82 -89.70 -0.79 10.24 15 23 H 0.12 2.28 8.14 -2.38 -0.02 2.26 15 24 H 0.07 2.04 8.13 -2.39 -0.02 2.03 15 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 15 26 H 0.13 1.97 8.14 -2.39 -0.02 1.95 15 27 H 0.09 3.05 7.43 -2.39 -0.02 3.03 15 28 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 Total: -1.00 -63.39 255.00 0.90 -62.48 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.42 Total: 12.01 kcal Atomic # 6 Polarization: 36.87 SS G_CDS: 4.69 Total: 41.56 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -6.07 Total: -114.11 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.08 Total: -36.19 kcal Atomic # 14 Polarization: 33.28 SS G_CDS: 2.03 Total: 35.31 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.05 kcal Total: -63.39 0.90 -62.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284523.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.225 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds