Wall clock time and date at job start Mon Mar 30 2020 04:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86793 * 120.00158 * 2 1 4 4 H 1.48501 * 109.46755 * 274.98636 * 3 2 1 5 5 H 1.48503 * 109.47003 * 34.98102 * 3 2 1 6 6 H 1.48494 * 109.47658 * 154.98471 * 3 2 1 7 7 C 1.40055 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00002 * 186.30639 * 7 2 1 9 9 C 1.41585 * 120.00500 * 6.31082 * 7 2 1 10 10 N 1.32922 * 119.40991 * 173.69194 * 9 7 2 11 11 C 1.33391 * 121.78025 * 179.97438 * 10 9 7 12 12 C 1.37618 * 118.71365 * 359.97438 * 11 10 9 13 13 C 1.41236 * 118.25455 * 0.02562 * 12 11 10 14 14 N 1.38522 * 120.05589 * 179.97438 * 13 12 11 15 15 N 1.32082 * 119.88088 * 359.97438 * 13 12 11 16 16 C 1.51995 * 115.42905 * 180.02562 * 12 11 10 17 17 S 1.83116 * 103.97866 * 342.02950 * 16 12 11 18 18 O 1.42100 * 109.83775 * 136.91840 * 17 16 12 19 19 O 1.42109 * 109.83182 * 271.32929 * 17 16 12 20 20 C 1.52055 * 125.91980 * 180.02562 * 11 10 9 21 21 H 0.96997 * 120.00696 * 0.02562 * 1 2 3 22 22 H 0.97002 * 120.00528 * 359.97438 * 14 13 12 23 23 H 0.97007 * 119.99689 * 180.02562 * 14 13 12 24 24 H 1.09002 * 110.55599 * 100.69106 * 16 12 11 25 25 H 1.09000 * 110.55094 * 223.36672 * 16 12 11 26 26 H 1.08998 * 110.54383 * 316.47444 * 20 11 10 27 27 H 1.08998 * 110.55074 * 79.27967 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4950 2.6199 0.8027 6 1 3.5871 1.4121 0.5920 7 6 2.0071 -1.2129 0.0005 8 1 3.0823 -1.2158 0.1033 9 6 1.3057 -2.4355 -0.1337 10 7 1.9882 -3.5693 -0.2585 11 6 1.3758 -4.7473 -0.3873 12 6 0.0001 -4.7806 -0.3896 13 6 -0.6985 -3.5604 -0.2553 14 7 -2.0836 -3.5505 -0.2533 15 7 -0.0285 -2.4288 -0.1316 16 6 -0.6192 -6.1605 -0.5400 17 16 0.7437 -7.1868 -1.2052 18 8 0.7699 -8.4428 -0.5411 19 8 0.7434 -7.1270 -2.6251 20 6 2.0603 -6.0970 -0.5353 21 1 -0.4851 0.8400 -0.0004 22 1 -2.5748 -4.3820 -0.3446 23 1 -2.5625 -2.7119 -0.1614 24 1 -0.9470 -6.5404 0.4276 25 1 -1.4534 -6.1312 -1.2410 26 1 2.8932 -6.0288 -1.2351 27 1 2.4023 -6.4608 0.4336 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261356692.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:27 Heat of formation + Delta-G solvation = -18.990110 kcal Electronic energy + Delta-G solvation = -16622.044690 eV Core-core repulsion = 13700.290016 eV Total energy + Delta-G solvation = -2921.754674 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.046 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39630 -36.80402 -35.79229 -34.77462 -34.41988 -32.80106 -30.00276 -28.71595 -27.73089 -24.69987 -21.49477 -21.19478 -18.69617 -18.06615 -17.22687 -16.05534 -15.95282 -15.67736 -15.38385 -14.82046 -14.31392 -13.91869 -13.47443 -13.17131 -13.10133 -12.53809 -12.37665 -11.91172 -11.81934 -11.50604 -11.40831 -10.91117 -10.81542 -10.53278 -10.41222 -10.28024 -9.49578 -9.23220 -8.31850 -7.52897 -7.32234 -6.70771 -4.90452 0.38451 2.32351 2.70279 2.83608 2.99104 3.03908 3.06572 3.78782 3.87411 4.30565 4.46379 4.48330 4.82323 5.20399 5.29041 5.54241 5.69239 5.84381 5.91926 6.09314 6.41844 6.63822 6.91756 7.14636 7.92419 7.96054 8.30292 8.41035 8.54927 9.03522 9.99242 10.17211 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.041302 B = 0.006305 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.768482 B = 4439.788538 C = 4904.886232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.066 3.934 3 Si 0.922 3.078 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.390 4.390 8 H 0.097 0.903 9 C 0.427 3.573 10 N -0.604 5.604 11 C 0.220 3.780 12 C -0.391 4.391 13 C 0.469 3.531 14 N -0.853 5.853 15 N -0.550 5.550 16 C -0.486 4.486 17 S 2.393 3.607 18 O -0.947 6.947 19 O -0.937 6.937 20 C -0.524 4.524 21 H 0.276 0.724 22 H 0.394 0.606 23 H 0.399 0.601 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.140 0.860 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -5.138 0.349 5.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.162 4.162 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.425 4.425 8 H 0.115 0.885 9 C 0.191 3.809 10 N -0.327 5.327 11 C 0.068 3.932 12 C -0.407 4.407 13 C 0.214 3.786 14 N -0.398 5.398 15 N -0.277 5.277 16 C -0.618 4.618 17 S 2.577 3.423 18 O -0.944 6.944 19 O -0.934 6.934 20 C -0.654 4.654 21 H 0.087 0.913 22 H 0.222 0.778 23 H 0.228 0.772 24 H 0.140 0.860 25 H 0.136 0.864 26 H 0.158 0.842 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.125 -4.926 -0.093 5.365 hybrid contribution -0.619 0.664 0.412 0.997 sum -2.743 -4.262 0.320 5.078 Atomic orbital electron populations 1.70113 1.07413 1.28353 1.26819 1.26128 0.95063 1.01547 0.93450 0.86074 0.80487 0.79668 0.79283 1.19225 1.19954 1.18146 1.19417 0.95317 0.87482 1.40284 0.88472 1.19463 0.84251 0.90132 0.87057 1.68150 1.40781 0.97111 1.26633 1.20059 0.88410 0.92329 0.92392 1.19670 0.94220 0.92240 1.34530 1.18489 0.85442 0.88399 0.86236 1.42027 1.03133 1.11257 1.83359 1.68980 1.09361 1.22706 1.26667 1.28644 1.15100 1.07395 1.10655 1.08850 0.80762 0.76582 0.76083 1.93587 1.85579 1.38356 1.76910 1.93604 1.85268 1.87795 1.26766 1.29351 1.15981 1.06995 1.13038 0.91256 0.77786 0.77186 0.86003 0.86370 0.84173 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.44 11.46 55.55 0.64 -16.80 15 2 C 0.07 1.58 5.49 -17.36 -0.10 1.48 15 3 Si 0.92 17.64 29.56 -169.99 -5.03 12.61 15 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 15 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 7 C -0.39 -10.20 9.37 -37.63 -0.35 -10.56 15 8 H 0.10 2.44 7.86 -52.48 -0.41 2.02 15 9 C 0.43 11.59 7.36 -158.80 -1.17 10.42 15 10 N -0.60 -15.42 10.33 -8.63 -0.09 -15.51 15 11 C 0.22 4.76 7.05 -81.47 -0.57 4.19 15 12 C -0.39 -7.93 6.00 -103.07 -0.62 -8.55 15 13 C 0.47 10.47 7.81 -154.95 -1.21 9.26 15 14 N -0.85 -14.75 9.05 31.40 0.28 -14.46 15 15 N -0.55 -14.32 7.96 -11.80 -0.09 -14.42 15 16 C -0.49 -7.17 6.59 36.65 0.24 -6.93 15 17 S 2.39 35.54 6.28 -107.50 -0.67 34.86 15 18 O -0.95 -15.42 18.16 -57.66 -1.05 -16.47 15 19 O -0.94 -16.94 18.16 -57.66 -1.05 -17.99 15 20 C -0.52 -8.37 7.35 36.68 0.27 -8.10 15 21 H 0.28 6.11 8.29 -40.82 -0.34 5.77 15 22 H 0.39 5.38 7.92 -40.82 -0.32 5.05 15 23 H 0.40 6.68 8.95 -40.82 -0.37 6.32 15 24 H 0.12 1.52 8.14 -51.93 -0.42 1.10 15 25 H 0.12 1.50 7.84 -51.93 -0.41 1.09 15 26 H 0.14 2.06 8.14 -51.93 -0.42 1.64 15 27 H 0.14 1.96 8.14 -51.93 -0.42 1.53 15 LS Contribution 254.59 15.07 3.84 3.84 Total: -1.00 -33.81 254.59 -8.64 -42.45 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -1.91 Total: 10.68 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.51 Total: -8.77 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 0.74 Total: -61.20 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -2.09 Total: -34.46 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 16 Polarization: 35.54 SS G_CDS: -0.67 Total: 34.86 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.81 -8.64 -42.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261356692.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.455 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds