Wall clock time and date at job start Mon Mar 30 2020 04:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 O 1.45194 * 109.47090 * 180.02562 * 9 7 2 11 11 C 1.34719 * 117.00051 * 179.97438 * 10 9 7 12 12 O 1.21483 * 119.99848 * 0.02562 * 11 10 9 13 13 C 1.47678 * 120.00416 * 179.97438 * 11 10 9 14 14 C 1.39689 * 120.10093 * 359.72931 * 13 11 10 15 15 C 1.37933 * 120.00262 * 179.71920 * 14 13 11 16 16 C 1.38378 * 120.22250 * 0.55425 * 15 14 13 17 17 Cl 1.73600 * 119.89760 * 179.69723 * 16 15 14 18 18 C 1.39132 * 120.20730 * 359.72364 * 16 15 14 19 19 N 1.39786 * 120.00115 * 180.02562 * 18 16 15 20 20 C 1.38572 * 119.98984 * 359.97438 * 18 16 15 21 21 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 23 23 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 24 24 H 1.07995 * 119.99665 * 359.97108 * 14 13 11 25 25 H 1.07998 * 119.88893 * 180.27296 * 15 14 13 26 26 H 0.97005 * 119.99616 * 179.97438 * 19 18 16 27 27 H 0.97000 * 120.00337 * 359.96971 * 19 18 16 28 28 H 1.08003 * 120.10832 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 8 2.1945 -3.6027 -0.0015 11 6 1.6797 -4.8477 -0.0019 12 8 0.4753 -5.0068 -0.0029 13 6 2.5792 -6.0188 -0.0022 14 6 3.9644 -5.8383 -0.0079 15 6 4.8027 -6.9337 -0.0023 16 6 4.2765 -8.2135 -0.0028 17 17 5.3394 -9.5861 -0.0038 18 6 2.8983 -8.4038 -0.0030 19 7 2.3714 -9.6985 -0.0030 20 6 2.0480 -7.3096 -0.0023 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5575 0.8880 23 1 0.6246 -2.5563 -0.8919 24 1 4.3789 -4.8411 -0.0124 25 1 5.8733 -6.7920 -0.0022 26 1 1.4105 -9.8311 -0.0027 27 1 2.9667 -10.4644 -0.0032 28 1 0.9778 -7.4550 -0.0029 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309084556.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:21 Heat of formation + Delta-G solvation = -77.091015 kcal Electronic energy + Delta-G solvation = -15650.602564 eV Core-core repulsion = 12691.991988 eV Total energy + Delta-G solvation = -2958.610575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.03794 -38.78458 -36.57699 -35.55787 -34.72671 -32.87850 -31.02803 -28.95160 -27.73076 -24.44302 -22.55126 -22.47245 -20.26884 -17.89825 -17.25618 -16.65789 -16.33380 -15.97907 -15.39347 -15.22225 -14.50372 -14.18781 -13.92759 -13.88128 -12.84864 -12.33540 -12.29688 -11.95545 -11.73211 -11.47693 -11.10147 -10.99785 -10.96753 -10.79150 -10.33185 -9.82613 -9.69668 -9.36614 -8.94003 -8.51762 -7.75577 -6.22301 -4.27879 0.69247 1.38586 1.96779 2.93036 3.26778 3.27597 3.30915 3.40256 3.74534 3.87232 4.32396 4.64366 5.13888 5.14412 5.18824 5.28526 5.48212 5.69809 5.94303 6.20784 6.42074 6.54842 6.84478 7.13780 7.21090 7.42254 7.48505 7.78624 7.99749 8.54352 8.83499 9.36614 10.88336 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.004075 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.704422 B = 6868.913830 C = 7478.472957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.072 0.928 9 C 0.205 3.795 10 O -0.350 6.350 11 C 0.493 3.507 12 O -0.515 6.515 13 C -0.057 4.057 14 C -0.108 4.108 15 C -0.076 4.076 16 C -0.094 4.094 17 Cl -0.075 7.075 18 C 0.215 3.785 19 N -0.873 5.873 20 C -0.129 4.129 21 H 0.268 0.732 22 H 0.031 0.969 23 H 0.031 0.969 24 H 0.150 0.850 25 H 0.139 0.861 26 H 0.403 0.597 27 H 0.401 0.599 28 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.575 -18.082 -0.013 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.134 3.866 10 O -0.265 6.265 11 C 0.337 3.663 12 O -0.406 6.406 13 C -0.059 4.059 14 C -0.128 4.128 15 C -0.095 4.095 16 C -0.125 4.125 17 Cl -0.046 7.046 18 C 0.109 3.891 19 N -0.413 5.413 20 C -0.152 4.152 21 H 0.078 0.922 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.167 0.833 25 H 0.157 0.843 26 H 0.232 0.768 27 H 0.230 0.770 28 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.154 -18.031 -0.014 19.789 hybrid contribution 0.094 0.408 0.001 0.419 sum 8.248 -17.623 -0.013 19.458 Atomic orbital electron populations 1.69975 1.06146 1.27747 1.49025 1.24962 0.95061 0.99542 0.94713 0.86279 0.79228 0.81355 0.78949 1.19830 1.21004 1.19834 1.20953 0.94255 0.88630 1.52880 0.90995 1.20987 0.87539 0.79882 0.98173 1.86499 1.43917 1.14490 1.81603 1.20989 0.86772 0.84689 0.73829 1.90782 1.16313 1.87397 1.46109 1.19222 0.93358 0.91294 1.02076 1.21330 0.91655 0.99802 1.00017 1.20819 1.00696 0.89530 0.98444 1.20573 0.88739 0.89038 1.14164 1.98332 1.65163 1.43814 1.97326 1.17208 0.90016 0.86363 0.95515 1.42488 1.10178 1.03757 1.84923 1.20624 1.00099 0.89389 1.05052 0.92213 0.95149 0.95142 0.83275 0.84289 0.76814 0.76961 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.59 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 15 3 Si 0.92 21.16 29.54 -169.99 -5.02 16.14 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 15 7 C -0.53 -15.05 9.44 -34.44 -0.33 -15.37 15 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 15 9 C 0.21 5.66 5.23 36.01 0.19 5.85 15 10 O -0.35 -8.31 9.45 -40.54 -0.38 -8.69 15 11 C 0.49 10.47 7.90 34.59 0.27 10.75 15 12 O -0.51 -12.16 16.13 -19.25 -0.31 -12.47 15 13 C -0.06 -0.94 5.87 -105.00 -0.62 -1.56 15 14 C -0.11 -1.52 9.61 -39.15 -0.38 -1.90 15 15 C -0.08 -0.89 9.80 -39.64 -0.39 -1.28 15 16 C -0.09 -1.09 6.34 -39.20 -0.25 -1.33 15 17 Cl -0.07 -0.73 27.57 -51.86 -1.43 -2.16 15 18 C 0.21 2.53 6.75 -83.78 -0.57 1.96 15 19 N -0.87 -7.48 9.05 32.41 0.29 -7.19 15 20 C -0.13 -1.81 9.44 -38.96 -0.37 -2.17 15 21 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 22 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.15 2.10 7.60 -52.49 -0.40 1.70 15 25 H 0.14 1.30 8.06 -52.49 -0.42 0.88 15 26 H 0.40 2.74 8.84 -40.82 -0.36 2.38 15 27 H 0.40 2.95 7.49 -40.82 -0.31 2.64 15 28 H 0.14 1.96 7.65 -52.48 -0.40 1.56 15 LS Contribution 274.21 15.07 4.13 4.13 Total: -1.00 -31.41 274.21 -6.79 -38.20 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -2.28 Total: 1.11 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -2.52 Total: -3.48 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 1.03 Total: -32.78 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.69 Total: -21.16 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.43 Total: -2.16 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.41 -6.79 -38.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309084556.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.896 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds