Wall clock time and date at job start Mon Mar 30 2020 04:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99727 * 2 1 4 4 H 1.48495 * 109.47119 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47191 * 120.00107 * 3 2 1 6 6 H 1.48507 * 109.46743 * 239.99601 * 3 2 1 7 7 C 1.37878 * 120.00190 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99594 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99923 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46818 * 299.99709 * 9 7 2 11 11 N 1.46894 * 109.46957 * 59.99569 * 9 7 2 12 12 C 1.50701 * 109.47013 * 180.02562 * 9 7 2 13 13 C 1.38302 * 120.08715 * 286.62407 * 12 9 7 14 14 O 1.35960 * 119.99105 * 0.02562 * 13 12 9 15 15 C 1.39098 * 120.01508 * 179.79500 * 13 12 9 16 16 F 1.35104 * 119.89529 * 180.21090 * 15 13 12 17 17 C 1.38545 * 120.20909 * 0.46281 * 15 13 12 18 18 C 1.37873 * 120.18037 * 359.79259 * 17 15 13 19 19 C 1.39664 * 120.09414 * 106.90485 * 12 9 7 20 20 C 1.47606 * 120.10109 * 359.97438 * 19 12 9 21 21 O 1.21489 * 120.00162 * 323.93062 * 20 19 12 22 22 O 1.34733 * 120.00031 * 143.93483 * 20 19 12 23 23 H 0.96999 * 119.99898 * 180.02562 * 1 2 3 24 24 H 1.00903 * 111.00071 * 60.00528 * 11 9 7 25 25 H 1.00907 * 110.99920 * 183.95137 * 11 9 7 26 26 H 0.96701 * 113.99679 * 90.00384 * 14 13 12 27 27 H 1.07995 * 119.90963 * 179.76835 * 17 15 13 28 28 H 1.08005 * 120.00686 * 179.97438 * 18 17 15 29 29 H 0.96695 * 116.99848 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1991 12 6 2.2304 -3.6446 0.0018 13 6 2.9421 -3.9496 -1.1442 14 8 2.7589 -3.2152 -2.2736 15 6 3.8488 -5.0044 -1.1401 16 9 4.5459 -5.2976 -2.2597 17 6 4.0355 -5.7587 0.0069 18 6 3.3266 -5.4653 1.1525 19 6 2.4176 -4.4047 1.1585 20 6 1.6572 -4.0882 2.3834 21 8 1.4091 -2.9321 2.6627 22 8 1.2383 -5.0813 3.1918 23 1 -0.4850 -0.8400 0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1570 -3.4139 -1.1907 26 1 3.3493 -2.4529 -2.3472 27 1 4.7380 -6.5790 0.0036 28 1 3.4741 -6.0554 2.0449 29 1 0.7437 -4.8249 3.9821 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309535585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:25 Heat of formation + Delta-G solvation = -145.651394 kcal Electronic energy + Delta-G solvation = -19285.464560 eV Core-core repulsion = 15895.544608 eV Total energy + Delta-G solvation = -3389.919952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.81309 -40.34780 -38.91478 -36.38430 -35.82730 -34.59314 -31.47889 -30.24732 -29.33562 -25.73286 -24.18490 -23.09244 -21.31002 -20.63505 -18.46636 -17.62318 -17.09067 -17.07544 -16.43340 -16.02841 -15.49144 -15.01148 -14.60180 -14.25262 -13.89774 -13.71683 -13.55248 -13.31102 -12.58825 -12.40252 -12.09307 -11.79595 -11.23134 -11.12053 -10.74597 -10.68879 -10.47602 -10.04301 -9.70427 -9.03181 -8.52937 -8.30937 -8.17032 -7.43084 -6.14575 -3.96288 0.83046 1.35144 2.63295 3.23867 3.47585 3.51468 3.68174 3.69234 4.17419 4.52494 4.62638 4.83404 5.13360 5.28927 5.42286 5.52980 5.90788 6.00326 6.09142 6.21614 6.33940 6.39495 6.71439 6.80573 7.26360 7.92173 7.98875 8.22175 8.30035 8.69279 8.89057 9.06933 9.86467 11.26023 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.018269 B = 0.009830 C = 0.007406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.275140 B = 2847.876882 C = 3779.879115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.042 3.958 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.597 4.597 8 H 0.041 0.959 9 C 0.231 3.769 10 H 0.062 0.938 11 N -0.830 5.830 12 C -0.014 4.014 13 C 0.070 3.930 14 O -0.475 6.475 15 C 0.097 3.903 16 F -0.134 7.134 17 C -0.175 4.175 18 C -0.051 4.051 19 C -0.125 4.125 20 C 0.513 3.487 21 O -0.462 6.462 22 O -0.522 6.522 23 H 0.290 0.710 24 H 0.342 0.658 25 H 0.296 0.704 26 H 0.397 0.603 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.487 -11.497 1.960 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.168 4.168 3 Si 0.893 3.107 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.636 4.636 8 H 0.059 0.941 9 C 0.122 3.878 10 H 0.080 0.920 11 N -0.362 5.362 12 C -0.017 4.017 13 C 0.024 3.976 14 O -0.286 6.286 15 C 0.077 3.923 16 F -0.112 7.112 17 C -0.194 4.194 18 C -0.070 4.070 19 C -0.127 4.127 20 C 0.355 3.645 21 O -0.347 6.347 22 O -0.334 6.334 23 H 0.103 0.897 24 H 0.160 0.840 25 H 0.106 0.894 26 H 0.255 0.745 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.677 -9.342 1.739 11.069 hybrid contribution 1.119 -2.187 0.228 2.467 sum 6.796 -11.529 1.968 13.527 Atomic orbital electron populations 1.70517 1.06834 1.32818 1.41802 1.25536 0.96601 1.01546 0.93114 0.83654 0.74952 0.75935 0.76169 1.20852 1.21756 1.21694 1.21345 0.92656 0.89964 1.59585 0.94113 1.18750 0.88149 0.89322 0.91602 0.92019 1.59617 1.28748 1.41539 1.06312 1.22100 0.95722 0.95050 0.88857 1.18005 0.97320 0.94212 0.88053 1.84673 1.63079 1.43661 1.37174 1.18469 0.92909 0.97567 0.83370 1.91478 1.77057 1.92613 1.50092 1.20798 1.04294 1.02439 0.91850 1.21089 0.93784 0.94262 0.97840 1.18849 1.01758 0.99588 0.92507 1.20772 0.77614 0.82966 0.83154 1.91058 1.51808 1.20650 1.71192 1.84579 1.69545 1.41242 1.38058 0.89739 0.83953 0.89398 0.74482 0.84212 0.84237 0.73319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.07 13.51 55.43 0.75 -26.32 15 2 C 0.04 1.21 5.39 -17.82 -0.10 1.11 15 3 Si 1.06 25.33 29.90 -169.99 -5.08 20.25 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 7 C -0.60 -16.33 8.44 -34.44 -0.29 -16.62 15 8 H 0.04 1.11 7.74 -52.49 -0.41 0.70 15 9 C 0.23 5.69 1.73 -70.02 -0.12 5.57 15 10 H 0.06 1.70 5.17 -51.93 -0.27 1.43 15 11 N -0.83 -19.62 7.69 -6.65 -0.05 -19.67 15 12 C -0.01 -0.28 4.92 -104.07 -0.51 -0.79 15 13 C 0.07 1.32 6.46 -39.24 -0.25 1.07 15 14 O -0.48 -8.75 10.07 -19.61 -0.20 -8.94 15 15 C 0.10 1.58 7.32 -39.15 -0.29 1.30 15 16 F -0.13 -2.14 17.10 2.25 0.04 -2.10 15 17 C -0.17 -2.42 10.00 -39.60 -0.40 -2.82 15 18 C -0.05 -0.74 9.63 -39.17 -0.38 -1.12 15 19 C -0.12 -2.29 5.82 -105.00 -0.61 -2.90 15 20 C 0.51 9.45 7.46 34.55 0.26 9.70 15 21 O -0.46 -10.54 15.16 -19.26 -0.29 -10.83 15 22 O -0.52 -7.04 13.23 -40.58 -0.54 -7.57 15 23 H 0.29 8.95 6.40 -40.82 -0.26 8.69 15 24 H 0.34 7.84 6.02 -39.29 -0.24 7.60 15 25 H 0.30 6.38 9.06 -39.29 -0.36 6.02 15 26 H 0.40 6.40 9.06 45.56 0.41 6.81 15 27 H 0.14 1.48 8.06 -52.49 -0.42 1.05 15 28 H 0.14 1.58 8.03 -52.48 -0.42 1.16 15 29 H 0.41 3.66 9.11 45.56 0.42 4.07 15 LS Contribution 263.81 15.07 3.98 3.98 Total: -1.00 -33.62 263.81 -4.42 -38.04 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.34 Total: 18.66 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -2.69 Total: -5.49 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.70 Total: -45.99 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -1.03 Total: -27.34 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.62 -4.42 -38.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309535585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.610 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds