Wall clock time and date at job start Mon Mar 30 2020 04:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99872 * 2 1 4 4 H 1.48506 * 109.46967 * 269.99426 * 3 2 1 5 5 H 1.48499 * 109.47362 * 29.99729 * 3 2 1 6 6 H 1.48507 * 109.47176 * 150.00059 * 3 2 1 7 7 C 1.37876 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99942 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00119 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.47155 * 299.99555 * 9 7 2 11 11 N 1.46903 * 109.47476 * 59.99865 * 9 7 2 12 12 C 1.50701 * 109.47228 * 180.02562 * 9 7 2 13 13 C 1.38187 * 119.91877 * 264.99941 * 12 9 7 14 14 C 1.38377 * 120.44977 * 179.97438 * 13 12 9 15 15 C 1.38162 * 120.27807 * 0.02562 * 14 13 12 16 16 F 1.35098 * 120.08761 * 179.97438 * 15 14 13 17 17 C 1.39991 * 119.82764 * 359.97438 * 15 14 13 18 18 C 1.47253 * 120.21551 * 179.97438 * 17 15 14 19 19 O 1.21521 * 120.00020 * 89.99928 * 18 17 15 20 20 O 1.34765 * 119.99949 * 269.99816 * 18 17 15 21 21 C 1.38587 * 119.92008 * 85.29958 * 12 9 7 22 22 O 1.35636 * 120.13976 * 359.97438 * 21 12 9 23 23 H 0.97001 * 119.99695 * 0.02562 * 1 2 3 24 24 H 1.00910 * 110.99446 * 60.00066 * 11 9 7 25 25 H 1.00892 * 111.00082 * 183.95010 * 11 9 7 26 26 H 1.08000 * 119.77308 * 0.02562 * 13 12 9 27 27 H 1.08000 * 119.86491 * 180.02562 * 14 13 12 28 28 H 0.96700 * 117.00086 * 180.02562 * 20 18 17 29 29 H 0.96699 * 114.00336 * 270.27682 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 7 0.4069 -2.5773 -1.1992 12 6 2.2303 -3.6446 0.0018 13 6 2.5998 -4.2368 -1.1908 14 6 3.4985 -5.2890 -1.2025 15 6 4.0361 -5.7591 -0.0197 16 9 4.9128 -6.7868 -0.0355 17 6 3.6699 -5.1677 1.1952 18 6 4.2371 -5.6623 2.4608 19 8 5.2684 -5.1855 2.8919 20 8 3.6126 -6.6437 3.1412 21 6 2.7534 -4.1055 1.1995 22 8 2.3862 -3.5275 2.3704 23 1 -0.4850 0.8401 -0.0004 24 1 0.9653 -2.5260 -2.0381 25 1 -0.1569 -3.4139 -1.1907 26 1 2.1849 -3.8755 -2.1202 27 1 3.7810 -5.7446 -2.1400 28 1 4.0227 -6.9351 3.9670 29 1 2.9466 -2.7854 2.6355 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309545859.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:15 Heat of formation + Delta-G solvation = -145.835533 kcal Electronic energy + Delta-G solvation = -18806.000767 eV Core-core repulsion = 15416.072831 eV Total energy + Delta-G solvation = -3389.927937 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.074 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.90217 -40.40155 -39.09786 -36.35171 -36.02849 -34.64431 -31.84675 -30.48596 -29.02214 -26.16682 -24.60750 -22.93205 -21.90760 -20.15165 -18.47187 -18.11085 -17.12484 -16.87428 -16.55641 -16.02681 -15.53301 -14.97093 -14.88781 -14.48878 -14.35930 -13.94002 -13.70903 -13.36141 -12.49811 -12.17985 -12.04360 -11.62850 -11.52860 -11.15963 -10.93267 -10.87594 -10.72947 -10.37092 -9.95104 -9.44220 -8.81476 -8.55470 -8.07460 -7.28311 -5.99359 -4.17028 1.02691 1.34261 2.08301 3.03035 3.27136 3.34924 3.36573 3.60723 4.06635 4.39227 4.64294 4.99576 5.07529 5.21721 5.33771 5.44772 5.80835 5.95115 6.07045 6.25676 6.36016 6.48444 6.58306 6.91511 7.34606 7.75660 7.82876 7.93047 8.03124 8.46327 8.84186 8.99147 9.53174 11.04459 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.006771 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.538163 B = 4134.444155 C = 4519.775346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.088 3.912 3 Si 0.886 3.114 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.053 0.947 9 C 0.258 3.742 10 H 0.063 0.937 11 N -0.809 5.809 12 C -0.104 4.104 13 C -0.069 4.069 14 C -0.159 4.159 15 C 0.122 3.878 16 F -0.138 7.138 17 C -0.180 4.180 18 C 0.550 3.450 19 O -0.505 6.505 20 O -0.503 6.503 21 C 0.182 3.818 22 O -0.482 6.482 23 H 0.258 0.742 24 H 0.318 0.682 25 H 0.302 0.698 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.410 0.590 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -10.401 0.631 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.120 4.120 3 Si 0.713 3.287 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.071 0.929 9 C 0.148 3.852 10 H 0.081 0.919 11 N -0.336 5.336 12 C -0.107 4.107 13 C -0.087 4.087 14 C -0.178 4.178 15 C 0.102 3.898 16 F -0.117 7.117 17 C -0.183 4.183 18 C 0.392 3.608 19 O -0.392 6.392 20 O -0.314 6.314 21 C 0.135 3.865 22 O -0.294 6.294 23 H 0.068 0.932 24 H 0.131 0.869 25 H 0.112 0.888 26 H 0.157 0.843 27 H 0.157 0.843 28 H 0.268 0.732 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.256 -9.781 0.659 10.687 hybrid contribution 1.931 -0.002 0.325 1.958 sum 6.186 -9.783 0.984 11.616 Atomic orbital electron populations 1.70095 1.05704 1.25985 1.45676 1.24920 0.94641 0.98558 0.93905 0.86731 0.79938 0.83836 0.78175 1.20647 1.21195 1.19976 1.20727 0.92062 0.89187 1.55733 0.92872 1.18223 0.87388 0.87905 0.91650 0.91934 1.59159 1.27871 1.42329 1.04223 1.22319 0.99517 0.98284 0.90570 1.20995 0.95336 0.93520 0.98848 1.20977 1.00430 0.99905 0.96439 1.17172 0.92258 0.87573 0.92788 1.91487 1.66579 1.56301 1.97297 1.19391 1.05198 1.03758 0.89967 1.20512 0.80830 0.75903 0.83548 1.90909 1.23470 1.56607 1.68263 1.84719 1.55797 1.51612 1.39295 1.17920 0.90789 0.91102 0.86668 1.84607 1.57761 1.51197 1.35857 0.93220 0.86868 0.88766 0.84279 0.84284 0.73223 0.73839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.15 12.77 55.43 0.71 -22.44 15 2 C 0.09 2.29 5.39 -17.82 -0.10 2.20 15 3 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.54 -13.53 8.71 -34.44 -0.30 -13.83 15 8 H 0.05 1.34 7.74 -52.49 -0.41 0.93 15 9 C 0.26 5.83 2.57 -70.02 -0.18 5.65 15 10 H 0.06 1.61 7.67 -51.93 -0.40 1.21 15 11 N -0.81 -17.17 8.13 -6.65 -0.05 -17.22 15 12 C -0.10 -1.98 4.99 -104.51 -0.52 -2.50 15 13 C -0.07 -1.10 9.26 -39.55 -0.37 -1.47 15 14 C -0.16 -2.32 10.00 -39.56 -0.40 -2.72 15 15 C 0.12 1.99 7.29 -38.95 -0.28 1.70 15 16 F -0.14 -2.20 16.83 2.25 0.04 -2.16 15 17 C -0.18 -3.18 5.77 -104.81 -0.60 -3.78 15 18 C 0.55 9.25 6.95 34.39 0.24 9.48 15 19 O -0.50 -9.41 17.89 -19.28 -0.35 -9.76 15 20 O -0.50 -6.82 13.44 -40.67 -0.55 -7.36 15 21 C 0.18 3.39 6.69 -38.68 -0.26 3.13 15 22 O -0.48 -8.84 12.08 -18.61 -0.22 -9.07 15 23 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 24 H 0.32 6.24 7.19 -39.29 -0.28 5.95 15 25 H 0.30 5.68 9.06 -39.30 -0.36 5.32 15 26 H 0.14 2.01 6.26 -52.49 -0.33 1.68 15 27 H 0.14 1.60 8.06 -52.49 -0.42 1.17 15 28 H 0.41 3.28 9.11 45.56 0.42 3.69 15 29 H 0.40 6.28 9.06 45.56 0.41 6.69 15 LS Contribution 272.08 15.07 4.10 4.10 Total: -1.00 -31.09 272.08 -4.61 -35.70 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -0.50 Total: 15.14 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.77 Total: -2.13 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.65 Total: -39.67 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.12 Total: -26.19 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.09 -4.61 -35.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309545859.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.136 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds