Wall clock time and date at job start Mon Mar 30 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 O 1.42900 * 109.47192 * 180.02562 * 15 13 12 17 17 C 1.36231 * 116.99838 * 180.02562 * 16 15 13 18 18 C 1.38667 * 122.58619 * 179.73739 * 17 16 15 19 19 C 1.33426 * 114.88531 * 179.75986 * 18 17 16 20 20 S 1.75866 * 109.65880 * 0.47316 * 19 18 17 21 21 C 1.33631 * 122.58989 * 0.02562 * 17 16 15 22 22 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 23 23 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 24 24 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 25 25 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 26 26 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 27 27 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 28 28 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 29 29 H 1.07998 * 122.55659 * 359.96748 * 18 17 16 30 30 H 1.08004 * 125.17383 * 180.23109 * 19 18 17 31 31 H 1.08001 * 125.18991 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 8 2.6984 0.1901 -4.6812 17 6 3.1339 -0.2951 -5.8774 18 6 3.2218 0.4924 -7.0154 19 6 3.6723 -0.1385 -8.1013 20 16 4.0029 -1.8217 -7.7132 21 6 3.5039 -1.5680 -6.0460 22 1 -0.3634 -1.0201 -0.1234 23 1 -0.3633 0.4033 0.9453 24 1 -0.3633 0.6171 -0.8218 25 1 1.9020 -1.9133 3.4363 26 1 2.2490 -1.6317 -1.1527 27 1 3.6492 -1.1201 -3.3980 28 1 1.9777 -1.5505 -3.8327 29 1 2.9497 1.5375 -7.0214 30 1 3.8092 0.3145 -9.0722 31 1 3.4973 -2.3253 -5.2761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337449162.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:43 Heat of formation + Delta-G solvation = -39.410817 kcal Electronic energy + Delta-G solvation = -16098.685965 eV Core-core repulsion = 13279.586126 eV Total energy + Delta-G solvation = -2819.099839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.11381 -38.74861 -36.03936 -34.93263 -32.55376 -30.32263 -29.24129 -27.95932 -24.89531 -23.74502 -21.13064 -19.84290 -19.66449 -18.51174 -17.76563 -17.00952 -16.27769 -16.23330 -15.24422 -14.33891 -14.18357 -14.03205 -13.54887 -13.15369 -12.83845 -12.75224 -12.67135 -12.21467 -11.90675 -11.68944 -11.41706 -11.09724 -10.97999 -10.52149 -10.15101 -9.87040 -9.31253 -9.19254 -9.04053 -8.34279 -8.28690 -8.15377 -6.64375 -4.25682 0.78178 1.42040 1.77604 2.56474 2.87094 3.06352 3.39044 3.44594 3.60169 4.08164 4.41293 4.73465 4.90107 5.05474 5.07014 5.11948 5.16282 5.27302 5.68302 5.77260 6.02094 6.34600 6.50831 6.62773 6.90741 7.09606 7.25665 7.32700 7.59455 8.19751 8.35335 8.63275 8.85425 9.40297 10.74297 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.053098 B = 0.003883 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.197743 B = 7209.354059 C = 7494.140686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.245 3.755 3 H 0.042 0.958 4 C -0.627 4.627 5 H 0.063 0.937 6 C 0.047 3.953 7 N -0.889 5.889 8 Si 1.033 2.967 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.504 3.496 14 O -0.533 6.533 15 C 0.042 3.958 16 O -0.276 6.276 17 C 0.120 3.880 18 C -0.138 4.138 19 C -0.188 4.188 20 S 0.109 5.891 21 C -0.328 4.328 22 H 0.044 0.956 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.271 0.729 26 H 0.394 0.606 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.152 0.848 30 H 0.172 0.828 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -2.624 -20.718 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.142 3.858 3 H 0.060 0.940 4 C -0.664 4.664 5 H 0.081 0.919 6 C -0.161 4.161 7 N -0.520 5.520 8 Si 0.860 3.140 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.287 3.713 14 O -0.410 6.410 15 C -0.037 4.037 16 O -0.189 6.189 17 C 0.063 3.937 18 C -0.170 4.170 19 C -0.324 4.324 20 S 0.369 5.631 21 C -0.464 4.464 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.081 0.919 26 H 0.227 0.773 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.169 0.831 30 H 0.189 0.811 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.196 -1.627 -20.325 20.639 hybrid contribution -0.030 -0.902 -0.237 0.933 sum 3.166 -2.529 -20.562 20.958 Atomic orbital electron populations 1.22435 0.98744 1.00044 1.00320 1.19034 0.90628 0.94203 0.81907 0.94017 1.21995 1.42270 1.11249 0.90915 0.91882 1.25643 0.92881 1.05934 0.91668 1.70877 1.42834 1.06463 1.31847 0.84189 0.77861 0.75636 0.76344 1.20762 1.20582 1.19908 1.46181 1.65376 1.13817 1.09417 1.19912 0.79445 0.87719 0.84191 1.90696 1.49984 1.15643 1.84725 1.22586 1.02655 0.92475 0.85961 1.86234 1.80817 1.36682 1.15160 1.17970 0.97249 0.91392 0.87095 1.19523 1.05131 1.02166 0.90209 1.25499 1.06787 0.97418 1.02698 1.84092 1.66644 1.08970 1.03404 1.25358 1.18580 1.00374 1.02049 0.93713 0.92099 0.95110 0.91912 0.77279 0.89395 0.89486 0.83056 0.81058 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 9.20 37.16 0.34 -3.20 16 2 C 0.25 5.88 2.16 -69.09 -0.15 5.73 16 3 H 0.04 1.09 6.15 -51.93 -0.32 0.77 16 4 C -0.63 -16.74 8.95 -34.44 -0.31 -17.05 16 5 H 0.06 1.74 7.96 -52.48 -0.42 1.33 16 6 C 0.05 1.30 5.19 -17.82 -0.09 1.21 16 7 N -0.89 -26.04 13.70 55.43 0.76 -25.29 16 8 Si 1.03 24.90 26.44 -169.99 -4.50 20.40 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.24 6.14 56.52 0.35 -5.89 16 12 N -0.70 -13.85 5.07 -54.94 -0.28 -14.13 16 13 C 0.50 9.76 7.87 -10.98 -0.09 9.67 16 14 O -0.53 -12.64 16.16 -14.35 -0.23 -12.88 16 15 C 0.04 0.61 5.35 36.01 0.19 0.80 16 16 O -0.28 -4.44 9.74 -40.39 -0.39 -4.84 16 17 C 0.12 1.58 6.64 -41.04 -0.27 1.30 16 18 C -0.14 -1.56 10.17 -41.11 -0.42 -1.98 16 19 C -0.19 -1.68 11.22 29.05 0.33 -1.35 16 20 S 0.11 0.99 23.34 -107.50 -2.51 -1.51 16 21 C -0.33 -3.66 10.09 29.12 0.29 -3.36 16 22 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.06 1.41 5.47 -51.93 -0.28 1.13 16 24 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 26 H 0.39 6.68 8.53 -40.82 -0.35 6.33 16 27 H 0.09 1.05 7.86 -51.92 -0.41 0.64 16 28 H 0.09 1.01 7.85 -51.93 -0.41 0.60 16 29 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 30 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 31 H 0.17 1.59 7.02 -52.49 -0.37 1.22 16 LS Contribution 283.63 15.07 4.27 4.27 Total: -1.00 -32.20 283.63 -6.50 -38.70 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.45 Total: 3.50 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.17 Total: -8.24 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.48 Total: -39.41 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.63 Total: -17.71 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.50 Total: 20.40 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.51 Total: -1.51 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.20 -6.50 -38.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337449162.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.709 kcal (2) G-P(sol) polarization free energy of solvation -32.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds