Wall clock time and date at job start Mon Mar 30 2020 04:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 O 1.42900 * 109.47192 * 180.02562 * 15 13 12 17 17 C 1.36231 * 116.99838 * 180.02562 * 16 15 13 18 18 C 1.38667 * 122.58619 * 179.73739 * 17 16 15 19 19 C 1.33426 * 114.88531 * 179.75986 * 18 17 16 20 20 S 1.75866 * 109.65880 * 0.47316 * 19 18 17 21 21 C 1.33631 * 122.58989 * 0.02562 * 17 16 15 22 22 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 23 23 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 24 24 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 25 25 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 26 26 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 27 27 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 28 28 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 29 29 H 1.07998 * 122.55659 * 359.96748 * 18 17 16 30 30 H 1.08004 * 125.17383 * 180.23109 * 19 18 17 31 31 H 1.08001 * 125.18991 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 8 2.6984 0.1901 -4.6812 17 6 3.1339 -0.2951 -5.8774 18 6 3.2218 0.4924 -7.0154 19 6 3.6723 -0.1385 -8.1013 20 16 4.0029 -1.8217 -7.7132 21 6 3.5039 -1.5680 -6.0460 22 1 -0.3634 -1.0201 -0.1234 23 1 -0.3633 0.4033 0.9453 24 1 -0.3633 0.6171 -0.8218 25 1 1.9020 -1.9133 3.4363 26 1 2.2490 -1.6317 -1.1527 27 1 3.6492 -1.1201 -3.3980 28 1 1.9777 -1.5505 -3.8327 29 1 2.9497 1.5375 -7.0214 30 1 3.8092 0.3145 -9.0722 31 1 3.4973 -2.3253 -5.2761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337449162.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:43 Heat of formation + Delta-G solvation = -61.730803 kcal Electronic energy + Delta-G solvation = -16099.653832 eV Core-core repulsion = 13279.586126 eV Total energy + Delta-G solvation = -2820.067706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.27799 -40.15011 -37.13127 -36.62246 -34.54303 -32.05197 -30.05564 -29.26968 -26.90822 -24.68931 -22.80031 -21.40963 -20.70560 -19.95039 -19.16617 -18.08170 -17.69561 -17.42444 -16.87295 -15.77589 -15.52033 -15.16752 -15.00852 -14.62652 -14.36942 -14.27368 -13.80356 -13.66441 -13.43593 -13.30021 -12.82027 -12.45969 -12.05895 -11.97486 -11.85134 -11.76219 -11.24744 -10.91278 -10.47454 -10.02057 -9.80148 -8.96438 -8.83125 -6.44483 0.01125 0.67711 1.00190 1.46461 1.49243 1.55171 1.67746 1.72192 1.74040 2.41516 2.80735 2.93578 3.66406 3.93878 4.04162 4.07647 4.35877 4.43517 4.47733 4.69114 4.74831 4.92194 4.96603 5.05312 5.22843 5.39912 5.54094 5.62229 6.00417 6.19262 6.50871 6.72227 7.21982 7.32366 8.55185 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.053098 B = 0.003883 C = 0.003735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.197743 B = 7209.354059 C = 7494.140686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.246 3.754 3 H 0.022 0.978 4 C -0.623 4.623 5 H 0.047 0.953 6 C 0.005 3.995 7 N -0.917 5.917 8 Si 1.064 2.936 9 H -0.279 1.279 10 H -0.275 1.275 11 H -0.255 1.255 12 N -0.695 5.695 13 C 0.502 3.498 14 O -0.581 6.581 15 C 0.053 3.947 16 O -0.310 6.310 17 C 0.091 3.909 18 C -0.169 4.169 19 C -0.174 4.174 20 S 0.147 5.853 21 C -0.334 4.334 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.036 0.964 25 H 0.262 0.738 26 H 0.409 0.591 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.151 0.849 30 H 0.203 0.797 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -3.197 -22.937 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.141 3.859 3 H 0.039 0.961 4 C -0.660 4.660 5 H 0.065 0.935 6 C -0.197 4.197 7 N -0.551 5.551 8 Si 0.886 3.114 9 H -0.205 1.205 10 H -0.201 1.201 11 H -0.179 1.179 12 N -0.346 5.346 13 C 0.288 3.712 14 O -0.461 6.461 15 C -0.025 4.025 16 O -0.224 6.224 17 C 0.035 3.965 18 C -0.200 4.200 19 C -0.310 4.310 20 S 0.407 5.593 21 C -0.470 4.470 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.245 0.755 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.169 0.831 30 H 0.220 0.780 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.484 -2.246 -22.579 22.956 hybrid contribution -0.041 -0.815 0.325 0.878 sum 3.442 -3.061 -22.254 22.726 Atomic orbital electron populations 1.22312 0.97517 1.00868 1.00130 1.18758 0.91496 0.93083 0.82526 0.96058 1.22146 1.41258 1.10523 0.92104 0.93502 1.26672 0.92645 1.08619 0.91813 1.70965 1.45310 1.06146 1.32681 0.83769 0.78745 0.72125 0.76731 1.20459 1.20057 1.17921 1.45957 1.65368 1.14475 1.08781 1.20721 0.78089 0.87203 0.85178 1.90668 1.51960 1.17930 1.85592 1.22496 1.04540 0.91874 0.83566 1.86156 1.81881 1.38000 1.16366 1.18268 0.99077 0.92628 0.86491 1.19674 1.07112 1.02576 0.90634 1.25905 1.04470 0.97367 1.03249 1.84011 1.65283 1.08537 1.01463 1.25668 1.17549 0.99947 1.03827 0.92563 0.92893 0.94477 0.92833 0.75528 0.86712 0.86274 0.83142 0.77967 0.80138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.61 9.20 71.98 0.66 -5.94 16 2 C 0.25 11.65 2.16 44.24 0.10 11.74 16 3 H 0.02 1.12 6.15 -2.38 -0.01 1.10 16 4 C -0.62 -33.26 8.95 25.60 0.23 -33.03 16 5 H 0.05 2.61 7.96 -2.91 -0.02 2.58 16 6 C 0.01 0.29 5.19 84.66 0.44 0.73 16 7 N -0.92 -54.29 13.70 21.45 0.29 -54.00 16 8 Si 1.06 50.02 26.44 68.60 1.81 51.83 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.25 -11.13 6.14 99.48 0.61 -10.52 16 12 N -0.70 -26.84 5.07 -446.11 -2.26 -29.10 16 13 C 0.50 18.97 7.87 87.66 0.69 19.66 16 14 O -0.58 -27.61 16.16 16.02 0.26 -27.35 16 15 C 0.05 1.42 5.35 71.24 0.38 1.81 16 16 O -0.31 -9.71 9.74 -77.15 -0.75 -10.46 16 17 C 0.09 2.28 6.64 21.33 0.14 2.42 16 18 C -0.17 -3.58 10.17 21.28 0.22 -3.36 16 19 C -0.17 -2.63 11.22 66.73 0.75 -1.88 16 20 S 0.15 2.22 23.34 -56.49 -1.32 0.90 16 21 C -0.33 -6.62 10.09 66.77 0.67 -5.94 16 22 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.05 2.39 5.47 -2.39 -0.01 2.38 16 24 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.26 15.44 8.73 -92.71 -0.81 14.63 16 26 H 0.41 13.24 8.53 -92.71 -0.79 12.45 16 27 H 0.12 2.43 7.86 -2.38 -0.02 2.41 16 28 H 0.12 2.39 7.85 -2.39 -0.02 2.38 16 29 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.18 2.87 7.02 -2.91 -0.02 2.85 16 Total: -1.00 -69.92 283.63 2.54 -67.37 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 0.23 Total: 14.59 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.28 Total: -13.80 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.97 Total: -83.10 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.49 Total: -37.81 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 1.81 Total: 51.83 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.90 kcal Total: -69.92 2.54 -67.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337449162.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.642 kcal (2) G-P(sol) polarization free energy of solvation -69.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds