Wall clock time and date at job start Mon Mar 30 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38423 * 122.53916 * 2 1 4 4 C 1.33389 * 114.92327 * 179.97438 * 3 2 1 5 5 S 1.75883 * 109.59129 * 0.02562 * 4 3 2 6 6 C 1.33389 * 122.53900 * 179.70851 * 2 1 3 7 7 C 1.50697 * 125.20130 * 0.02785 * 6 2 1 8 8 H 1.08990 * 109.47521 * 14.99796 * 7 6 2 9 9 C 1.53004 * 109.47126 * 254.99687 * 7 6 2 10 10 O 1.42904 * 109.46953 * 305.00188 * 9 7 6 11 11 N 1.46500 * 109.46996 * 134.99948 * 7 6 2 12 12 C 1.34771 * 120.00307 * 204.99538 * 11 7 6 13 13 O 1.21691 * 119.99926 * 0.02562 * 12 11 7 14 14 C 1.46377 * 120.00334 * 180.02562 * 12 11 7 15 15 H 1.07996 * 119.99857 * 359.97438 * 14 12 11 16 16 C 1.40051 * 119.99765 * 180.02562 * 14 12 11 17 17 N 1.30668 * 120.00502 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99708 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47654 * 59.99711 * 18 16 14 20 20 H 1.48499 * 109.47261 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47461 * 299.99554 * 18 16 14 22 22 H 1.09002 * 109.47152 * 90.02359 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.02460 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.02440 * 1 2 3 25 25 H 1.08004 * 122.53880 * 0.02562 * 3 2 1 26 26 H 1.07992 * 125.20624 * 180.02562 * 4 3 2 27 27 H 1.08997 * 109.46764 * 65.00331 * 9 7 6 28 28 H 1.09001 * 109.47039 * 185.00578 * 9 7 6 29 29 H 0.96702 * 113.99806 * 179.97438 * 10 9 7 30 30 H 0.97003 * 120.00199 * 24.99795 * 11 7 6 31 31 H 0.96996 * 120.00174 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9902 0.0005 5 16 3.9386 -0.7304 0.0004 6 6 2.2245 -1.1245 0.0057 7 6 1.6536 -2.5191 0.0122 8 1 0.5975 -2.4807 -0.2543 9 6 1.8055 -3.1259 1.4086 10 8 3.1771 -3.0697 1.8058 11 7 2.3730 -3.3457 -0.9602 12 6 1.7726 -4.4229 -1.5039 13 8 0.6329 -4.7087 -1.1875 14 6 2.4915 -5.2491 -2.4751 15 1 3.5029 -4.9953 -2.7562 16 6 1.8674 -6.3681 -3.0405 17 7 0.6435 -6.6750 -2.7007 18 14 2.7846 -7.4221 -4.2804 19 1 4.0099 -7.9752 -3.6497 20 1 1.9106 -8.5374 -4.7246 21 1 3.1626 -6.5919 -5.4523 22 1 -0.3633 -0.0004 -1.0277 23 1 -0.3633 0.8902 0.5135 24 1 -0.3633 -0.8898 0.5142 25 1 1.7965 2.1464 0.0004 26 1 4.3077 1.7822 0.0010 27 1 1.1985 -2.5626 2.1174 28 1 1.4745 -4.1643 1.3915 29 1 3.3477 -3.4377 2.6836 30 1 3.2814 -3.1178 -1.2127 31 1 0.2112 -7.4498 -3.0926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357623550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:54 Heat of formation + Delta-G solvation = -59.941160 kcal Electronic energy + Delta-G solvation = -16766.028470 eV Core-core repulsion = 13946.038369 eV Total energy + Delta-G solvation = -2819.990101 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.69495 -37.27151 -36.07638 -33.44723 -32.32987 -30.68979 -28.85436 -26.50342 -25.89718 -23.00337 -21.60343 -19.54530 -18.54569 -17.22422 -16.82066 -16.51264 -15.32611 -14.98896 -14.69637 -14.05953 -13.96684 -13.59481 -13.24590 -12.77152 -12.46628 -12.30315 -12.03249 -11.78692 -11.51391 -11.27262 -11.12755 -10.96574 -10.86321 -10.45477 -10.28025 -10.24011 -9.59116 -8.85064 -8.33585 -7.96266 -7.63324 -7.55784 -6.19200 -4.64223 1.30238 1.98606 2.40266 2.93664 3.16831 3.21366 3.23652 4.11185 4.54811 4.69245 4.88908 5.08144 5.13691 5.53257 5.62509 5.65820 5.72107 5.80880 5.86925 5.99808 6.11890 6.25548 6.30584 6.36587 6.71888 6.79338 7.43679 7.90085 7.97539 8.08406 8.33023 9.02295 9.50401 10.58195 10.76220 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.006006 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.021759 B = 4660.975414 C = 4796.155629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.120 4.120 3 C -0.129 4.129 4 C -0.240 4.240 5 S 0.142 5.858 6 C -0.160 4.160 7 C 0.225 3.775 8 H 0.106 0.894 9 C 0.069 3.931 10 O -0.563 6.563 11 N -0.752 5.752 12 C 0.557 3.443 13 O -0.582 6.582 14 C -0.543 4.543 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.132 0.868 26 H 0.157 0.843 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.369 0.631 30 H 0.382 0.618 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 11.738 6.611 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.160 4.160 4 C -0.376 4.376 5 S 0.409 5.591 6 C -0.278 4.278 7 C 0.117 3.883 8 H 0.123 0.877 9 C -0.011 4.011 10 O -0.367 6.367 11 N -0.407 5.407 12 C 0.362 3.638 13 O -0.466 6.466 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.131 4.131 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.193 1.193 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.150 0.850 26 H 0.175 0.825 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.215 0.785 30 H 0.214 0.786 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.468 10.818 6.212 13.250 hybrid contribution -0.428 0.275 -0.132 0.526 sum 4.040 11.093 6.079 13.279 Atomic orbital electron populations 1.20505 0.90080 1.02272 1.02387 1.18782 0.97311 0.91522 1.05637 1.19907 0.92894 0.98739 1.04508 1.25645 0.99697 1.00332 1.11967 1.84322 1.05758 0.97953 1.71110 1.24542 0.96260 0.98772 1.08266 1.19084 0.97700 0.83210 0.88319 0.87694 1.22708 0.82494 1.00383 0.95543 1.86500 1.26477 1.85419 1.38325 1.46218 1.17311 1.30728 1.46467 1.18219 0.86073 0.78602 0.80936 1.90588 1.19143 1.71614 1.65234 1.20841 1.00976 1.10947 1.25219 0.91454 1.25691 0.94435 0.96997 0.96004 1.70002 1.11291 1.22745 1.35641 0.86432 0.79925 0.79416 0.80975 1.19259 1.20553 1.19253 0.91281 0.91919 0.91476 0.85018 0.82532 0.94238 0.92146 0.78515 0.78602 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.25 9.60 36.01 0.35 -0.91 16 2 C -0.12 -1.85 5.80 -106.25 -0.62 -2.47 16 3 C -0.13 -1.75 9.98 -41.21 -0.41 -2.16 16 4 C -0.24 -3.19 11.23 29.04 0.33 -2.86 16 5 S 0.14 2.20 21.45 -107.50 -2.31 -0.10 16 6 C -0.16 -2.77 5.14 -36.00 -0.19 -2.95 16 7 C 0.23 4.50 2.49 -69.08 -0.17 4.33 16 8 H 0.11 2.26 6.08 -51.93 -0.32 1.94 16 9 C 0.07 1.23 6.84 37.16 0.25 1.48 16 10 O -0.56 -9.17 12.16 -35.23 -0.43 -9.60 16 11 N -0.75 -17.53 5.01 -56.35 -0.28 -17.82 16 12 C 0.56 15.89 7.71 -12.99 -0.10 15.79 16 13 O -0.58 -18.45 14.68 5.20 0.08 -18.38 16 14 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16 15 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 16 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -22.95 11.83 55.55 0.66 -22.29 16 18 Si 0.91 20.31 29.56 -169.99 -5.02 15.28 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 24 H 0.07 0.93 6.93 -51.93 -0.36 0.57 16 25 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 26 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.37 4.28 9.12 45.56 0.42 4.70 16 30 H 0.38 8.41 7.82 -40.82 -0.32 8.09 16 31 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 284.59 15.07 4.29 4.29 Total: -1.00 -34.13 284.59 -6.67 -40.81 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -2.66 Total: 11.05 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -0.99 Total: -3.24 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.37 Total: -40.11 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.35 Total: -27.97 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.31 Total: -0.10 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.13 -6.67 -40.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357623550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.134 kcal (2) G-P(sol) polarization free energy of solvation -34.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds