Wall clock time and date at job start Mon Mar 30 2020 04:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 120.00282 * 2 1 4 4 C 1.50699 * 109.47504 * 269.99961 * 3 2 1 5 5 H 1.08005 * 119.99415 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00396 * 179.97438 * 4 3 2 7 7 N 1.31510 * 119.99636 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99955 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47461 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46801 * 120.00360 * 8 6 4 11 11 H 1.48491 * 109.47074 * 240.00099 * 8 6 4 12 12 C 1.34780 * 119.99764 * 180.02562 * 2 1 3 13 13 O 1.21560 * 119.99999 * 184.33994 * 12 2 1 14 14 C 1.47781 * 120.00054 * 4.34263 * 12 2 1 15 15 C 1.39975 * 120.92660 * 149.97288 * 14 12 2 16 16 N 1.32111 * 118.93821 * 180.02562 * 15 14 12 17 17 C 1.32019 * 120.95673 * 0.02562 * 16 15 14 18 18 Cl 1.73601 * 118.96833 * 179.97438 * 17 16 15 19 19 N 1.32014 * 122.06151 * 0.24857 * 17 16 15 20 20 C 1.32115 * 120.95189 * 359.48453 * 19 17 16 21 21 H 1.09004 * 109.46990 * 272.57496 * 1 2 3 22 22 H 1.09003 * 109.46774 * 32.57206 * 1 2 3 23 23 H 1.08994 * 109.47391 * 152.57153 * 1 2 3 24 24 H 1.08995 * 109.47167 * 30.00640 * 3 2 1 25 25 H 1.09004 * 109.47289 * 149.99951 * 3 2 1 26 26 H 0.97000 * 119.99837 * 179.97438 * 7 6 4 27 27 H 1.08002 * 120.52928 * 0.02562 * 15 14 12 28 28 H 1.08005 * 120.52915 * 180.23859 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5534 3.6179 -0.6731 8 14 3.4381 3.4168 -3.4339 9 1 2.8610 2.4164 -4.3673 10 1 2.8001 4.7372 -3.6679 11 1 4.9006 3.5255 -3.6665 12 6 2.1388 -1.1673 -0.0005 13 8 3.3518 -1.1689 0.0791 14 6 1.4031 -2.4452 -0.0980 15 6 1.9833 -3.5648 -0.7055 16 7 1.2899 -4.6874 -0.7716 17 6 0.0685 -4.7614 -0.2760 18 17 -0.7963 -6.2622 -0.3917 19 7 -0.5178 -3.7284 0.3000 20 6 0.1059 -2.5692 0.4133 21 1 -0.3633 0.0462 1.0267 22 1 -0.3633 0.8661 -0.5533 23 1 -0.3634 -0.9121 -0.4733 24 1 1.6085 2.0283 0.5139 25 1 3.1499 1.1383 0.5139 26 1 4.0303 4.4438 -0.8503 27 1 2.9819 -3.5118 -1.1135 28 1 -0.3788 -1.7296 0.8893 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379843873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:42 Heat of formation + Delta-G solvation = 29.843001 kcal Electronic energy + Delta-G solvation = -16155.734678 eV Core-core repulsion = 13234.053861 eV Total energy + Delta-G solvation = -2921.680817 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.41237 -38.94148 -37.09414 -35.38978 -34.08128 -32.98603 -31.92892 -28.11137 -26.66554 -25.02778 -24.63420 -22.79003 -19.54985 -18.25708 -18.00516 -16.76600 -16.67956 -15.68703 -15.27627 -14.68945 -14.48485 -14.30073 -13.95598 -13.30005 -12.69549 -12.38161 -12.06269 -11.89767 -11.77751 -11.70033 -11.35207 -11.09614 -10.94977 -10.70058 -10.28736 -9.80864 -9.59996 -9.57008 -9.30616 -8.54965 -7.92427 -6.16164 -4.21969 0.23890 0.74669 1.16574 2.97803 3.23244 3.31262 3.33699 3.45431 3.70466 3.80082 4.25950 4.34910 4.36518 4.62664 4.83521 5.19068 5.26681 5.51074 5.58166 5.87040 5.99065 6.45964 6.82696 7.22814 7.31060 7.52477 7.78900 8.06492 8.08412 8.62019 8.83952 9.43839 10.91999 Molecular weight = 255.05amu Principal moments of inertia in cm(-1) A = 0.041402 B = 0.004656 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.133096 B = 6012.633307 C = 6131.390122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.587 5.587 3 C 0.244 3.756 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.555 3.445 13 O -0.525 6.525 14 C -0.221 4.221 15 C 0.216 3.784 16 N -0.509 5.509 17 C 0.366 3.634 18 Cl 0.023 6.977 19 N -0.510 5.510 20 C 0.176 3.824 21 H 0.058 0.942 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.038 0.962 25 H 0.050 0.950 26 H 0.264 0.736 27 H 0.190 0.810 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 -12.877 1.782 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.318 5.318 3 C 0.125 3.875 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.339 3.661 13 O -0.402 6.402 14 C -0.229 4.229 15 C 0.051 3.949 16 N -0.225 5.225 17 C 0.073 3.927 18 Cl 0.051 6.949 19 N -0.226 5.226 20 C 0.011 3.989 21 H 0.076 0.924 22 H 0.102 0.898 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.207 0.793 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.140 -13.667 1.787 16.538 hybrid contribution 0.433 1.027 -0.968 1.476 sum -8.707 -12.641 0.818 15.371 Atomic orbital electron populations 1.22300 0.81651 1.03376 1.00889 1.48114 1.06220 1.07648 1.69846 1.19439 0.92784 0.77295 0.97944 1.21427 1.37087 1.06587 0.92041 0.92292 1.24932 0.95160 0.96274 0.97604 1.69931 1.38015 1.14313 1.30761 0.86417 0.78184 0.78389 0.84302 1.19775 1.20872 1.20754 1.17577 0.87067 0.82529 0.78896 1.90800 1.12905 1.86594 1.49909 1.22226 0.97682 0.98747 1.04251 1.23482 0.98760 0.84496 0.88209 1.67987 1.06865 1.28125 1.19516 1.23200 0.87959 0.89582 0.91963 1.98434 1.74148 1.26272 1.96044 1.67984 1.37940 0.99520 1.17179 1.24407 0.89802 0.93885 0.90789 0.92354 0.89819 0.91607 0.94369 0.93236 0.92582 0.79273 0.78401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.85 8.80 59.84 0.53 1.38 15 2 N -0.59 -11.38 2.86 -184.11 -0.53 -11.91 15 3 C 0.24 5.94 5.21 -5.20 -0.03 5.92 15 4 C -0.53 -14.32 9.39 -34.44 -0.32 -14.64 15 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 15 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 7 N -0.89 -25.45 13.29 55.43 0.74 -24.71 15 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 15 9 H -0.27 -6.33 7.11 56.52 0.40 -5.92 15 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 12 C 0.56 10.72 7.49 -12.36 -0.09 10.63 15 13 O -0.52 -12.22 16.35 5.31 0.09 -12.13 15 14 C -0.22 -3.36 5.53 -104.69 -0.58 -3.93 15 15 C 0.22 3.11 10.90 -16.78 -0.18 2.93 15 16 N -0.51 -7.25 10.39 -11.29 -0.12 -7.37 15 17 C 0.37 5.00 8.17 -91.77 -0.75 4.25 15 18 Cl 0.02 0.26 29.26 -51.86 -1.52 -1.25 15 19 N -0.51 -6.84 10.39 -11.29 -0.12 -6.95 15 20 C 0.18 2.27 8.77 -16.78 -0.15 2.12 15 21 H 0.06 0.63 7.40 -51.93 -0.38 0.25 15 22 H 0.08 1.19 8.09 -51.93 -0.42 0.77 15 23 H 0.07 0.79 4.77 -51.93 -0.25 0.54 15 24 H 0.04 0.93 8.07 -51.93 -0.42 0.51 15 25 H 0.05 1.36 7.37 -51.93 -0.38 0.98 15 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 27 H 0.19 2.49 7.99 -52.49 -0.42 2.07 15 28 H 0.20 2.04 4.70 -52.48 -0.25 1.80 15 LS Contribution 267.61 15.07 4.03 4.03 Total: -1.00 -31.13 267.61 -6.18 -37.31 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: -2.06 Total: -3.35 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.67 Total: 10.27 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.02 Total: -50.94 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.13 -6.18 -37.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379843873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.153 kcal (2) G-P(sol) polarization free energy of solvation -31.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds