Wall clock time and date at job start Mon Mar 30 2020 05:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00112 * 2 1 4 4 H 1.48501 * 109.46933 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46728 * 299.99172 * 3 2 1 6 6 H 1.48494 * 109.47488 * 59.99470 * 3 2 1 7 7 C 1.37875 * 119.99529 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99720 * 171.02573 * 7 2 1 9 9 C 1.50702 * 120.00603 * 351.03470 * 7 2 1 10 10 C 1.52996 * 115.54959 * 84.69212 * 9 7 2 11 11 N 1.46500 * 109.47023 * 35.63918 * 10 9 7 12 12 C 1.31091 * 120.00155 * 115.01084 * 11 10 9 13 13 N 1.35582 * 125.81082 * 179.71476 * 12 11 10 14 14 H 0.96995 * 122.97615 * 359.97372 * 13 12 11 15 15 N 1.37813 * 114.04571 * 179.80017 * 13 12 11 16 16 C 1.27562 * 116.54930 * 0.50463 * 15 13 12 17 17 C 1.50695 * 124.80969 * 179.70880 * 16 15 13 18 18 O 1.42901 * 109.47623 * 90.02210 * 17 16 15 19 19 S 1.75885 * 110.38195 * 359.72582 * 16 15 13 20 20 C 1.52998 * 117.51811 * 230.39903 * 9 7 2 21 21 C 1.52999 * 117.49442 * 299.02828 * 9 7 2 22 22 H 0.97003 * 119.99612 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46684 * 155.63740 * 10 9 7 24 24 H 1.08996 * 109.47535 * 275.63377 * 10 9 7 25 25 H 1.08998 * 109.47560 * 210.02152 * 17 16 15 26 26 H 1.08997 * 109.47390 * 330.02456 * 17 16 15 27 27 H 0.96697 * 114.00770 * 180.02562 * 18 17 16 28 28 H 1.08996 * 117.50147 * 214.96957 * 20 9 7 29 29 H 1.09010 * 117.49695 * 359.97438 * 20 9 7 30 30 H 1.08999 * 117.50140 * 359.97170 * 21 9 7 31 31 H 1.08999 * 117.50418 * 144.97469 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0745 -1.1999 -0.1454 9 6 1.2648 -2.4912 0.2045 10 6 0.6455 -3.1025 -1.0539 11 7 1.5210 -2.8502 -2.2010 12 6 2.1013 -3.8522 -2.8156 13 7 2.9259 -3.7551 -3.8875 14 1 3.1596 -2.9083 -4.2988 15 7 3.4056 -4.9658 -4.3385 16 6 3.0134 -6.0043 -3.7100 17 6 3.4155 -7.4169 -4.0473 18 8 4.5991 -7.7609 -3.3242 19 16 1.9365 -5.5539 -2.3944 20 6 1.8034 -3.4528 1.2656 21 6 0.5114 -2.6748 1.5234 22 1 -0.4850 0.8401 -0.0004 23 1 0.5283 -4.1774 -0.9157 24 1 -0.3299 -2.6511 -1.2350 25 1 2.6110 -8.0991 -3.7728 26 1 3.6082 -7.4942 -5.1173 27 1 4.9165 -8.6586 -3.4932 28 1 1.7166 -4.5210 1.0673 29 1 2.6933 -3.1475 1.8162 30 1 0.5511 -1.8578 2.2438 31 1 -0.4256 -3.2310 1.4947 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380020664.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:06:35 Heat of formation + Delta-G solvation = 56.607744 kcal Electronic energy + Delta-G solvation = -16374.373317 eV Core-core repulsion = 13591.729907 eV Total energy + Delta-G solvation = -2782.643410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.078 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54379 -37.23892 -36.81529 -34.36249 -31.85106 -31.48119 -27.63861 -26.05748 -25.11612 -22.94149 -21.09974 -20.10720 -19.25447 -18.61922 -17.82898 -16.58619 -16.02210 -15.06273 -14.87347 -14.72066 -14.48007 -14.03346 -13.58052 -12.99524 -12.61298 -12.38656 -12.10889 -11.67219 -11.06172 -10.94823 -10.71075 -10.61085 -10.44783 -10.18832 -10.06811 -9.70156 -9.33056 -9.00170 -8.48123 -8.37528 -8.06955 -7.18594 -5.95922 -3.96109 1.27946 1.50112 1.81374 2.60444 2.71838 3.33609 3.41544 3.46316 4.11544 4.48627 4.60008 4.81170 5.07894 5.28421 5.31792 5.39149 5.72754 6.11434 6.20747 6.42038 6.59036 6.74504 6.96799 7.06166 7.24997 7.29792 7.35955 7.48704 7.61880 7.97252 8.34917 8.57658 9.00673 9.66828 11.14914 Molecular weight = 255.08amu Principal moments of inertia in cm(-1) A = 0.030381 B = 0.005861 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.409153 B = 4776.234703 C = 5198.879467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.470 4.470 8 H 0.056 0.944 9 C 0.046 3.954 10 C 0.110 3.890 11 N -0.459 5.459 12 C 0.306 3.694 13 N -0.523 5.523 14 H 0.446 0.554 15 N -0.199 5.199 16 C 0.050 3.950 17 C 0.168 3.832 18 O -0.562 6.562 19 S -0.038 6.038 20 C -0.212 4.212 21 C -0.155 4.155 22 H 0.257 0.743 23 H 0.021 0.979 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.388 0.612 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 -14.876 -7.765 17.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.128 4.128 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.508 4.508 8 H 0.074 0.926 9 C 0.045 3.955 10 C -0.020 4.020 11 N -0.185 5.185 12 C -0.084 4.084 13 N -0.262 5.262 14 H 0.294 0.706 15 N -0.016 5.016 16 C -0.253 4.253 17 C 0.087 3.913 18 O -0.367 6.367 19 S 0.188 5.812 20 C -0.250 4.250 21 C -0.193 4.193 22 H 0.067 0.933 23 H 0.039 0.961 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.236 0.764 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.234 -13.498 -7.330 15.696 hybrid contribution 0.648 0.686 -0.426 1.036 sum 3.882 -12.812 -7.756 15.471 Atomic orbital electron populations 1.70013 1.05836 1.26117 1.49803 1.24873 0.94695 0.98645 0.94623 0.86613 0.80299 0.84122 0.77403 1.19899 1.21150 1.21129 1.20183 0.93010 0.88383 1.49196 0.92599 1.18852 0.97573 0.94360 0.84758 1.21865 0.95564 0.94988 0.89577 1.71760 1.12953 1.22247 1.11566 1.25313 0.98059 0.91339 0.93731 1.45359 1.45928 1.05743 1.29126 0.70645 1.73244 1.15616 0.91253 1.21517 1.26824 1.02196 0.97712 0.98521 1.20236 0.88356 0.86597 0.96137 1.86570 1.43270 1.36977 1.69873 1.86135 1.53595 1.04460 1.37038 1.23116 0.98117 0.95614 1.08126 1.22549 0.92651 1.01112 1.03030 0.93323 0.96147 0.89093 0.90490 0.90493 0.76406 0.91656 0.90374 0.89870 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.37 13.03 55.43 0.72 -24.65 16 2 C 0.07 2.09 5.38 -17.82 -0.10 1.99 16 3 Si 0.89 21.92 29.55 -169.99 -5.02 16.89 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.47 -13.22 8.05 -34.44 -0.28 -13.50 16 8 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 9 C 0.05 1.16 1.77 -155.66 -0.28 0.88 16 10 C 0.11 2.60 6.46 -4.04 -0.03 2.57 16 11 N -0.46 -10.60 9.88 -61.38 -0.61 -11.21 16 12 C 0.31 6.01 8.43 -89.39 -0.75 5.26 16 13 N -0.52 -8.92 6.93 30.42 0.21 -8.71 16 14 H 0.45 6.84 8.96 -184.29 -1.65 5.19 16 15 N -0.20 -3.09 11.96 32.97 0.39 -2.69 16 16 C 0.05 0.71 7.21 -14.05 -0.10 0.61 16 17 C 0.17 1.55 7.64 36.00 0.28 1.82 16 18 O -0.56 -5.49 13.64 -35.23 -0.48 -5.97 16 19 S -0.04 -0.62 21.46 -107.50 -2.31 -2.93 16 20 C -0.21 -4.81 9.88 -26.73 -0.26 -5.08 16 21 C -0.16 -3.69 9.56 -26.73 -0.26 -3.94 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.02 0.44 6.03 -51.93 -0.31 0.13 16 24 H 0.09 2.28 8.14 -51.93 -0.42 1.86 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.39 1.47 9.12 45.56 0.42 1.88 16 28 H 0.06 1.35 8.06 -51.93 -0.42 0.93 16 29 H 0.08 1.77 8.14 -51.92 -0.42 1.34 16 30 H 0.08 2.08 8.14 -51.93 -0.42 1.66 16 31 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 289.31 15.07 4.36 4.36 Total: -1.00 -33.11 289.31 -8.55 -41.66 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.05 Total: 2.62 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.77 Total: -9.38 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.72 Total: -47.25 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.48 Total: -5.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.31 Total: -2.93 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.11 -8.55 -41.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380020664.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.271 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds