Wall clock time and date at job start Mon Mar 30 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00178 * 2 1 4 4 H 1.48494 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47274 * 300.00203 * 3 2 1 6 6 H 1.48498 * 109.47341 * 60.00183 * 3 2 1 7 7 C 1.38949 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 179.97438 * 7 2 1 9 9 N 1.37107 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99841 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99897 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99813 * 179.97438 * 10 9 7 13 13 C 1.50696 * 109.47093 * 179.97438 * 12 10 9 14 14 S 1.70450 * 124.59966 * 269.97732 * 13 12 10 15 15 C 1.75491 * 92.45871 * 180.02562 * 14 13 12 16 16 C 1.32745 * 110.59806 * 359.75398 * 15 14 13 17 17 C 1.36102 * 124.59891 * 89.99845 * 13 12 10 18 18 C 1.47032 * 123.47144 * 359.94120 * 17 13 12 19 19 O 1.21557 * 120.00121 * 0.02562 * 18 17 13 20 20 O 1.34801 * 120.00049 * 179.97438 * 18 17 13 21 21 H 0.96998 * 119.99565 * 359.97438 * 1 2 3 22 22 H 0.97002 * 120.00055 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.46996 * 59.99713 * 12 10 9 24 24 H 1.08993 * 109.46839 * 299.99675 * 12 10 9 25 25 H 1.08005 * 124.70229 * 179.97438 * 15 14 13 26 26 H 1.07999 * 123.45277 * 180.21603 * 16 15 14 27 27 H 0.96700 * 117.00244 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0022 13 6 2.2229 -6.0084 -0.0027 14 16 2.8514 -6.7438 -1.4061 15 6 3.8167 -7.8740 -0.4730 16 6 3.6484 -7.6690 0.8277 17 6 2.7251 -6.5963 1.1174 18 6 2.3693 -6.1787 2.4815 19 8 1.5877 -5.2636 2.6526 20 8 2.9090 -6.8113 3.5424 21 1 -0.4849 0.8401 0.0004 22 1 0.3533 -2.3907 -0.0016 23 1 0.6173 -4.9205 -0.8924 24 1 0.6168 -4.9209 0.8875 25 1 4.4614 -8.6291 -0.8980 26 1 4.1479 -8.2471 1.5911 27 1 2.6445 -6.5016 4.4195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380184206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:36 Heat of formation + Delta-G solvation = -99.392315 kcal Electronic energy + Delta-G solvation = -16262.593751 eV Core-core repulsion = 13305.059825 eV Total energy + Delta-G solvation = -2957.533926 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03354 -38.24482 -36.86564 -35.76914 -33.94247 -31.78855 -31.06143 -27.79107 -25.30472 -23.82654 -21.79482 -19.77471 -19.35545 -17.98660 -17.58673 -16.59210 -16.05518 -15.96203 -15.24004 -14.48227 -14.33063 -14.08345 -13.89670 -12.94527 -12.89563 -12.53907 -12.36193 -12.03786 -11.49454 -11.38083 -11.25921 -11.03094 -10.89395 -10.32408 -10.20405 -10.01913 -9.49869 -8.82548 -8.34128 -8.30628 -7.94369 -6.38952 -3.79585 0.91610 1.63239 1.98270 2.04922 3.18174 3.28370 3.32027 3.36300 3.46871 3.93248 4.20387 4.74723 5.02668 5.18251 5.27093 5.39002 5.53429 5.82996 6.03292 6.07529 6.23501 6.39895 6.42522 6.73602 7.57990 8.07284 8.17021 8.62148 9.19274 9.55875 10.06430 10.78847 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.006011 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.269648 B = 4657.092016 C = 5146.795001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.557 5.557 10 C 0.455 3.545 11 O -0.591 6.591 12 C -0.088 4.088 13 C -0.083 4.083 14 S 0.209 5.791 15 C -0.254 4.254 16 C -0.085 4.085 17 C -0.166 4.166 18 C 0.546 3.454 19 O -0.502 6.502 20 O -0.517 6.517 21 H 0.271 0.729 22 H 0.394 0.606 23 H 0.091 0.909 24 H 0.122 0.878 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 -15.291 0.507 15.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.193 5.193 10 C 0.240 3.760 11 O -0.476 6.476 12 C -0.129 4.129 13 C -0.203 4.203 14 S 0.476 5.524 15 C -0.388 4.388 16 C -0.114 4.114 17 C -0.181 4.181 18 C 0.389 3.611 19 O -0.391 6.391 20 O -0.329 6.329 21 H 0.081 0.919 22 H 0.227 0.773 23 H 0.109 0.891 24 H 0.140 0.860 25 H 0.185 0.815 26 H 0.169 0.831 27 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.678 -14.796 -1.402 15.101 hybrid contribution -0.121 0.880 2.225 2.396 sum 2.557 -13.916 0.823 14.173 Atomic orbital electron populations 1.69628 1.05930 1.28046 1.50513 1.25268 0.95645 0.99704 0.97309 0.85794 0.79696 0.81117 0.77698 1.19236 1.20728 1.20735 1.19758 0.93374 0.82137 1.47464 0.87884 1.41787 1.09254 1.04383 1.63843 1.19370 0.88021 0.84193 0.84436 1.90531 1.13675 1.87140 1.56261 1.20479 0.96485 0.90572 1.05406 1.24083 1.00123 0.99065 0.97078 1.83007 1.37673 1.25024 1.06688 1.25370 1.09155 1.06910 0.97400 1.21116 0.97383 0.96708 0.96178 1.19048 1.06166 1.02881 0.90019 1.20104 0.77344 0.78917 0.84777 1.90909 1.33814 1.28155 1.86270 1.84558 1.68544 1.61617 1.18194 0.91906 0.77301 0.89099 0.86034 0.81507 0.83125 0.73248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.09 13.05 55.50 0.72 -24.36 15 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 15 3 Si 0.93 21.53 29.55 -169.99 -5.02 16.51 15 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 7 C -0.30 -8.58 9.68 -14.93 -0.14 -8.73 15 8 H 0.10 3.11 7.16 -52.49 -0.38 2.74 15 9 N -0.56 -14.84 5.29 -10.96 -0.06 -14.89 15 10 C 0.46 11.36 7.75 -10.98 -0.09 11.28 15 11 O -0.59 -16.63 15.61 5.54 0.09 -16.54 15 12 C -0.09 -1.70 5.42 -29.04 -0.16 -1.85 15 13 C -0.08 -1.47 4.84 -35.08 -0.17 -1.64 15 14 S 0.21 2.96 22.97 -107.50 -2.47 0.49 15 15 C -0.25 -3.10 11.12 28.85 0.32 -2.78 15 16 C -0.09 -1.16 10.13 -39.01 -0.40 -1.56 15 17 C -0.17 -2.83 5.98 -104.65 -0.63 -3.46 15 18 C 0.55 9.47 8.30 34.30 0.28 9.76 15 19 O -0.50 -10.28 14.83 -19.31 -0.29 -10.57 15 20 O -0.52 -6.75 13.16 -40.77 -0.54 -7.29 15 21 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.39 10.04 7.90 -40.82 -0.32 9.72 15 23 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 24 H 0.12 2.36 5.94 -51.93 -0.31 2.05 15 25 H 0.17 1.46 8.06 -52.48 -0.42 1.04 15 26 H 0.15 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.41 3.47 9.11 45.56 0.42 3.88 15 LS Contribution 267.18 15.07 4.03 4.03 Total: -1.00 -34.76 267.18 -5.60 -40.36 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -0.99 Total: 10.74 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -1.07 Total: 1.54 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.67 Total: -39.26 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.74 Total: -34.40 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.47 Total: 0.49 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -34.76 -5.60 -40.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380184206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.034 kcal (2) G-P(sol) polarization free energy of solvation -34.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds