Wall clock time and date at job start Mon Mar 30 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86794 * 120.00178 * 2 1 4 4 H 1.48494 * 109.47416 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47274 * 300.00203 * 3 2 1 6 6 H 1.48498 * 109.47341 * 60.00183 * 3 2 1 7 7 C 1.38949 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00572 * 179.97438 * 7 2 1 9 9 N 1.37107 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99841 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99897 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99813 * 179.97438 * 10 9 7 13 13 C 1.50696 * 109.47093 * 179.97438 * 12 10 9 14 14 S 1.70450 * 124.59966 * 269.97732 * 13 12 10 15 15 C 1.75491 * 92.45871 * 180.02562 * 14 13 12 16 16 C 1.32745 * 110.59806 * 359.75398 * 15 14 13 17 17 C 1.36102 * 124.59891 * 89.99845 * 13 12 10 18 18 C 1.47032 * 123.47144 * 359.94120 * 17 13 12 19 19 O 1.21557 * 120.00121 * 0.02562 * 18 17 13 20 20 O 1.34801 * 120.00049 * 179.97438 * 18 17 13 21 21 H 0.96998 * 119.99565 * 359.97438 * 1 2 3 22 22 H 0.97002 * 120.00055 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.46996 * 59.99713 * 12 10 9 24 24 H 1.08993 * 109.46839 * 299.99675 * 12 10 9 25 25 H 1.08005 * 124.70229 * 179.97438 * 15 14 13 26 26 H 1.07999 * 123.45277 * 180.21603 * 16 15 14 27 27 H 0.96700 * 117.00244 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2102 -3.5579 -0.0011 12 6 1.2437 -4.8630 -0.0022 13 6 2.2229 -6.0084 -0.0027 14 16 2.8514 -6.7438 -1.4061 15 6 3.8167 -7.8740 -0.4730 16 6 3.6484 -7.6690 0.8277 17 6 2.7251 -6.5963 1.1174 18 6 2.3693 -6.1787 2.4815 19 8 1.5877 -5.2636 2.6526 20 8 2.9090 -6.8113 3.5424 21 1 -0.4849 0.8401 0.0004 22 1 0.3533 -2.3907 -0.0016 23 1 0.6173 -4.9205 -0.8924 24 1 0.6168 -4.9209 0.8875 25 1 4.4614 -8.6291 -0.8980 26 1 4.1479 -8.2471 1.5911 27 1 2.6445 -6.5016 4.4195 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380184206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:36 Heat of formation + Delta-G solvation = -125.459412 kcal Electronic energy + Delta-G solvation = -16263.724105 eV Core-core repulsion = 13305.059825 eV Total energy + Delta-G solvation = -2958.664280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.040 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.34581 -40.12086 -38.10456 -37.02866 -36.02090 -33.49546 -32.86781 -29.15300 -27.10727 -25.41281 -22.90816 -21.41515 -20.79458 -20.02413 -18.89679 -17.87718 -17.86117 -17.21899 -16.69350 -16.43151 -15.83263 -15.79675 -15.31786 -14.61494 -14.15267 -13.98214 -13.80821 -13.45085 -13.42711 -12.97688 -12.66103 -12.52411 -12.44192 -12.12770 -11.99582 -11.56015 -11.37085 -10.53702 -10.05878 -9.80654 -9.43472 -8.49382 -5.99039 -0.34427 0.50390 0.88721 0.96852 1.34486 1.39308 1.54398 1.99019 2.07272 2.27788 2.32432 3.16771 3.22136 3.57764 3.96785 4.08676 4.38682 4.47970 4.60367 4.66474 5.04055 5.11454 5.32560 5.37879 5.59543 5.94789 6.53266 7.00051 7.07059 7.49109 8.03213 8.68528 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.006011 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.269648 B = 4657.092016 C = 5146.795001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.996 3.004 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.569 5.569 10 C 0.453 3.547 11 O -0.626 6.626 12 C -0.075 4.075 13 C -0.129 4.129 14 S 0.233 5.767 15 C -0.230 4.230 16 C -0.097 4.097 17 C -0.180 4.180 18 C 0.543 3.457 19 O -0.546 6.546 20 O -0.501 6.501 21 H 0.279 0.721 22 H 0.396 0.604 23 H 0.118 0.882 24 H 0.117 0.883 25 H 0.210 0.790 26 H 0.177 0.823 27 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -16.436 0.134 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.820 3.180 4 H -0.197 1.197 5 H -0.192 1.192 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.205 5.205 10 C 0.240 3.760 11 O -0.514 6.514 12 C -0.116 4.116 13 C -0.250 4.250 14 S 0.500 5.500 15 C -0.364 4.364 16 C -0.124 4.124 17 C -0.197 4.197 18 C 0.388 3.612 19 O -0.439 6.439 20 O -0.315 6.315 21 H 0.088 0.912 22 H 0.230 0.770 23 H 0.136 0.864 24 H 0.135 0.865 25 H 0.227 0.773 26 H 0.194 0.806 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 3.502 -15.972 -1.762 16.446 hybrid contribution -0.337 1.116 2.370 2.641 sum 3.165 -14.856 0.608 15.202 Atomic orbital electron populations 1.69692 1.06935 1.29357 1.50075 1.26108 0.96594 1.02542 0.96071 0.84828 0.77971 0.76790 0.78459 1.19737 1.19152 1.19641 1.19722 0.92684 0.83865 1.50119 0.90269 1.41882 1.09314 1.04665 1.64627 1.20305 0.87941 0.85509 0.82221 1.90481 1.15508 1.88015 1.57355 1.20270 0.96648 0.88227 1.06483 1.24140 1.01646 0.99904 0.99296 1.82854 1.37209 1.24636 1.05278 1.25886 1.07778 1.06176 0.96602 1.21325 0.97234 0.96303 0.97533 1.19467 1.06696 1.03829 0.89668 1.20381 0.76638 0.78313 0.85885 1.90887 1.35843 1.30127 1.87003 1.84507 1.67563 1.60640 1.18750 0.91184 0.77036 0.86422 0.86497 0.77297 0.80563 0.70942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.43 13.05 21.66 0.28 -51.15 15 2 C -0.01 -0.74 5.50 84.93 0.47 -0.28 15 3 Si 1.00 44.18 29.55 68.60 2.03 46.21 15 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.33 -19.88 9.68 84.04 0.81 -19.06 15 8 H 0.08 4.99 7.16 -2.91 -0.02 4.97 15 9 N -0.57 -31.32 5.29 -306.97 -1.62 -32.94 15 10 C 0.45 23.30 7.75 87.66 0.68 23.98 15 11 O -0.63 -36.29 15.61 -3.09 -0.05 -36.34 15 12 C -0.08 -2.95 5.42 29.10 0.16 -2.79 15 13 C -0.13 -4.52 4.84 25.19 0.12 -4.40 15 14 S 0.23 6.13 22.97 -56.49 -1.30 4.84 15 15 C -0.23 -4.77 11.12 66.64 0.74 -4.03 15 16 C -0.10 -2.36 10.13 22.68 0.23 -2.13 15 17 C -0.18 -5.99 5.98 -19.88 -0.12 -6.10 15 18 C 0.54 18.77 8.30 70.13 0.58 19.35 15 19 O -0.55 -22.94 14.83 19.65 0.29 -22.65 15 20 O -0.50 -12.39 13.16 -57.12 -0.75 -13.14 15 21 H 0.28 14.45 8.31 -92.71 -0.77 13.68 15 22 H 0.40 20.89 7.90 -92.71 -0.73 20.16 15 23 H 0.12 3.84 8.14 -2.38 -0.02 3.82 15 24 H 0.12 4.70 5.94 -2.39 -0.01 4.68 15 25 H 0.21 2.52 8.06 -2.91 -0.02 2.50 15 26 H 0.18 3.31 8.06 -2.91 -0.02 3.29 15 27 H 0.43 6.70 9.11 -74.06 -0.67 6.03 15 Total: -1.00 -76.69 267.18 2.40 -74.29 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.16 Total: 26.35 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 3.67 Total: 4.53 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.34 Total: -84.09 kcal Atomic # 8 Polarization: -71.62 SS G_CDS: -0.51 Total: -72.13 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 6.13 SS G_CDS: -1.30 Total: 4.84 kcal Total: -76.69 2.40 -74.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380184206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.171 kcal (2) G-P(sol) polarization free energy of solvation -76.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds