Wall clock time and date at job start Mon Mar 30 2020 04:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00248 * 2 1 4 4 C 1.53001 * 109.47106 * 66.04554 * 3 2 1 5 5 C 1.52998 * 109.47135 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46859 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.46851 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00139 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99914 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99908 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99926 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47385 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46846 * 120.00214 * 11 9 7 14 14 H 1.48501 * 109.47220 * 240.00043 * 11 9 7 15 15 C 1.46900 * 110.99693 * 236.04893 * 2 1 3 16 16 C 1.53006 * 109.47014 * 199.39620 * 15 2 1 17 17 H 1.08999 * 110.63800 * 301.66828 * 16 15 2 18 18 C 1.54595 * 110.72178 * 178.32580 * 16 15 2 19 19 C 1.53992 * 105.13848 * 219.67925 * 18 16 15 20 20 N 1.47901 * 107.05755 * 358.77527 * 19 18 16 21 21 C 1.46904 * 110.99898 * 145.83882 * 20 19 18 22 22 C 1.48532 * 105.81917 * 25.33068 * 20 19 18 23 23 H 1.09003 * 109.47068 * 187.55993 * 1 2 3 24 24 H 1.09002 * 109.46951 * 307.55087 * 1 2 3 25 25 H 1.08996 * 109.47748 * 67.55439 * 1 2 3 26 26 H 1.08992 * 109.47305 * 186.05192 * 3 2 1 27 27 H 1.09007 * 109.46838 * 306.05351 * 3 2 1 28 28 H 1.09002 * 109.47451 * 300.00478 * 4 3 2 29 29 H 1.09003 * 109.46774 * 60.00187 * 4 3 2 30 30 H 1.09000 * 109.46913 * 299.99820 * 5 4 3 31 31 H 1.08994 * 109.47452 * 60.00524 * 5 4 3 32 32 H 1.09000 * 109.46703 * 299.99327 * 6 5 4 33 33 H 1.08999 * 109.47856 * 59.99833 * 6 5 4 34 34 H 0.97001 * 119.99998 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.47384 * 79.39608 * 15 2 1 36 36 H 1.08999 * 109.47378 * 319.39305 * 15 2 1 37 37 H 1.09002 * 110.31240 * 338.60109 * 18 16 15 38 38 H 1.09007 * 110.30796 * 100.76606 * 18 16 15 39 39 H 1.09003 * 109.91904 * 118.12867 * 19 18 16 40 40 H 1.08996 * 109.91923 * 239.22722 * 19 18 16 41 41 H 1.09000 * 109.47447 * 302.61211 * 21 20 19 42 42 H 1.09000 * 109.47193 * 62.60625 * 21 20 19 43 43 H 1.08996 * 109.47223 * 182.60347 * 21 20 19 44 44 H 1.09001 * 110.66650 * 202.35509 * 22 20 19 45 45 H 1.09004 * 110.66594 * 79.22788 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1793 3.4860 1.3180 6 6 1.8158 4.1717 2.6365 7 6 2.3549 5.5791 2.6360 8 1 2.9023 5.9474 1.7810 9 6 2.1492 6.3965 3.7272 10 7 1.4830 5.9478 4.7686 11 14 2.8179 8.1406 3.7268 12 1 3.5252 8.3994 2.4470 13 1 1.6951 9.1013 3.8744 14 1 3.7646 8.3080 4.8587 15 6 1.9953 -0.7659 -1.1376 16 6 3.4484 -1.1570 -0.8606 17 1 4.0587 -0.2704 -0.6885 18 6 4.0188 -2.0013 -2.0232 19 6 4.8738 -3.0897 -1.3480 20 7 4.8108 -2.8486 0.1098 21 6 4.8435 -4.1144 0.8546 22 6 3.5353 -2.1251 0.3458 23 1 -0.3633 -1.0188 0.1352 24 1 -0.3633 0.6263 0.8148 25 1 -0.3634 0.3923 -0.9497 26 1 3.0797 1.3444 -0.1083 27 1 1.5610 1.9274 -0.8309 28 1 0.5472 2.0845 1.4266 29 1 2.0659 1.5015 2.1492 30 1 3.2636 3.4593 1.2096 31 1 1.7446 4.0417 0.4872 32 1 0.7316 4.1984 2.7453 33 1 2.2508 3.6160 3.4672 34 1 1.3379 6.5230 5.5361 35 1 1.9490 -0.1554 -2.0394 36 1 1.3972 -1.6664 -1.2774 37 1 3.2088 -2.4560 -2.5935 38 1 4.6382 -1.3821 -2.6721 39 1 4.4702 -4.0755 -1.5792 40 1 5.9049 -3.0202 -1.6946 41 1 4.0174 -4.7478 0.5312 42 1 5.7880 -4.6239 0.6640 43 1 4.7493 -3.9109 1.9213 44 1 3.5758 -1.5695 1.2828 45 1 2.6939 -2.8181 0.3444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385369599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:56 Heat of formation + Delta-G solvation = -14.616628 kcal Electronic energy + Delta-G solvation = -18989.539010 eV Core-core repulsion = 16233.979403 eV Total energy + Delta-G solvation = -2755.559607 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 254.205 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.41869 -37.46756 -34.42517 -32.84446 -31.95980 -29.54740 -28.59326 -27.04615 -25.71042 -24.67688 -22.71425 -21.30715 -20.78881 -19.95852 -19.87509 -16.45803 -16.13839 -15.74604 -15.47223 -15.00606 -14.49978 -14.37723 -14.18477 -14.01176 -13.69962 -13.16295 -12.54770 -12.43129 -12.26992 -12.15379 -11.79860 -11.65236 -11.56235 -11.50851 -11.32120 -11.00801 -10.95517 -10.93512 -10.65372 -10.43182 -10.39869 -10.19398 -9.55317 -9.21110 -8.94999 -8.58861 -8.29669 -8.23230 -5.94451 -3.96351 3.34255 3.41462 3.45937 3.84196 3.96363 4.50544 4.51040 4.59053 4.77465 4.95066 5.14079 5.21972 5.22768 5.33290 5.36055 5.41010 5.41549 5.49519 5.53882 5.57246 5.61724 5.67375 5.74396 5.76878 5.84165 5.92384 6.00314 6.08463 6.19359 6.21732 6.32781 6.58215 6.73200 6.87130 6.87507 7.02793 7.12708 7.16732 7.30163 7.75504 7.91661 8.07158 8.50190 9.11470 9.67376 11.16957 Molecular weight = 254.21amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.003324 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.409124 B = 8420.876315 C = 8752.120995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.541 5.541 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.021 3.979 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.890 3.110 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.064 3.936 16 C -0.086 4.086 17 H 0.086 0.914 18 C -0.128 4.128 19 C 0.036 3.964 20 N -0.527 5.527 21 C 0.017 3.983 22 C 0.054 3.946 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.021 0.979 26 H 0.072 0.928 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.016 0.984 34 H 0.259 0.741 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.294 -19.640 -13.075 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.016 4.016 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.718 3.282 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.065 4.065 16 C -0.105 4.105 17 H 0.104 0.896 18 C -0.166 4.166 19 C -0.092 4.092 20 N -0.251 5.251 21 C -0.131 4.131 22 C -0.073 4.073 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.040 0.960 26 H 0.091 0.909 27 H 0.047 0.953 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.839 -19.533 -12.291 23.252 hybrid contribution -0.665 0.835 -0.903 1.398 sum 2.174 -18.698 -13.193 22.987 Atomic orbital electron populations 1.22426 0.87592 1.01867 1.00715 1.62008 1.07628 1.14749 1.42111 1.22291 0.99935 0.86771 0.98263 1.21671 1.00722 0.96840 0.95870 1.21596 0.99377 0.93000 1.00772 1.19090 0.96641 0.94645 0.91206 1.21339 1.34624 0.97991 1.01734 0.92738 1.25036 0.95403 0.98468 0.95673 1.69981 1.41231 1.36297 1.06075 0.86563 0.78727 0.84907 0.77967 1.19767 1.21085 1.21018 1.22114 0.94871 0.97596 0.91881 1.22064 0.95673 0.98573 0.94236 0.89583 1.22449 0.99114 0.97206 0.97866 1.22844 1.00476 0.97273 0.88582 1.64742 1.34928 1.19634 1.05822 1.22491 1.00613 0.90647 0.99395 1.23143 0.89164 0.95328 0.99665 0.91974 0.90493 0.96039 0.90912 0.95290 0.92629 0.91707 0.93471 0.93788 0.96802 0.96593 0.93140 0.94613 0.91382 0.91567 0.90963 0.94095 0.90571 0.95669 0.91591 0.91145 0.89226 0.93955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.36 60.06 0.56 0.82 16 2 N -0.54 -6.87 4.47 -242.92 -1.09 -7.96 16 3 C 0.05 0.79 4.79 -3.82 -0.02 0.77 16 4 C -0.11 -1.98 5.15 -26.73 -0.14 -2.11 16 5 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 6 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 11 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 C 0.06 0.68 4.32 -3.82 -0.02 0.66 16 16 C -0.09 -0.91 3.09 -88.76 -0.27 -1.18 16 17 H 0.09 1.04 6.80 -51.93 -0.35 0.69 16 18 C -0.13 -1.12 6.51 -25.38 -0.17 -1.28 16 19 C 0.04 0.33 6.70 -2.76 -0.02 0.31 16 20 N -0.53 -5.72 5.55 -238.72 -1.33 -7.05 16 21 C 0.02 0.16 9.41 60.07 0.57 0.72 16 22 C 0.05 0.61 5.78 -1.90 -0.01 0.60 16 23 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 24 H 0.08 0.97 6.16 -51.93 -0.32 0.65 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 1.05 6.63 -51.93 -0.34 0.70 16 27 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.06 0.97 6.41 -51.93 -0.33 0.64 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 36 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 37 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.34 7.69 -51.93 -0.40 -0.06 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.21 7.99 -51.93 -0.42 -0.21 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.04 0.46 7.90 -51.93 -0.41 0.05 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -30.63 349.18 -10.48 -41.11 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -8.84 Total: -5.02 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -0.20 Total: -16.60 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: -1.67 Total: -41.80 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.63 -10.48 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385369599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.492 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds