Wall clock time and date at job start Mon Mar 30 2020 05:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81393 * 109.47290 * 2 1 4 4 O 1.42099 * 109.46975 * 70.94584 * 3 2 1 5 5 N 1.65594 * 103.00417 * 180.02562 * 3 2 1 6 6 C 1.39790 * 120.00528 * 180.02562 * 5 3 2 7 7 C 1.38746 * 120.10014 * 34.99935 * 6 5 3 8 8 C 1.38203 * 119.98702 * 179.97438 * 7 6 5 9 9 C 1.38340 * 120.20696 * 0.02562 * 8 7 6 10 10 C 1.38176 * 120.20580 * 359.97438 * 9 8 7 11 11 C 1.38714 * 120.01025 * 0.02562 * 10 9 8 12 12 O 1.35792 * 120.10661 * 179.97438 * 11 10 9 13 13 C 1.34808 * 116.99665 * 354.40459 * 12 11 10 14 14 H 1.07995 * 120.00090 * 5.08008 * 13 12 11 15 15 C 1.38629 * 119.99679 * 185.07037 * 13 12 11 16 16 N 1.31571 * 120.00410 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99959 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46795 * 60.00506 * 17 15 13 19 19 H 1.48492 * 109.47328 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47370 * 300.00820 * 17 15 13 21 21 H 1.09000 * 109.47513 * 59.99822 * 1 2 3 22 22 H 1.08996 * 109.47500 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47296 * 300.00119 * 1 2 3 24 24 H 1.09008 * 109.46966 * 240.00270 * 2 1 3 25 25 H 1.09002 * 109.47012 * 120.00311 * 2 1 3 26 26 H 0.97004 * 119.99755 * 359.97438 * 5 3 2 27 27 H 1.07995 * 120.00425 * 359.95533 * 7 6 5 28 28 H 1.08006 * 119.89513 * 180.02562 * 8 7 6 29 29 H 1.07997 * 119.89106 * 180.02562 * 9 8 7 30 30 H 1.08001 * 119.99812 * 179.72047 * 10 9 8 31 31 H 0.97000 * 120.00387 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8802 2.3025 1.2663 5 7 3.7801 1.5236 -0.0007 6 6 4.6111 2.6477 -0.0004 7 6 4.2343 3.7914 0.6889 8 6 5.0579 4.9012 0.6882 9 6 6.2584 4.8765 0.0012 10 6 6.6418 3.7419 -0.6880 11 6 5.8219 2.6231 -0.6931 12 8 6.1965 1.5072 -1.3703 13 6 7.3192 1.5894 -2.1118 14 1 7.9207 2.4860 -2.0835 15 6 7.7018 0.5230 -2.9107 16 7 6.9690 -0.5691 -2.9456 17 14 9.2573 0.6371 -3.9389 18 1 10.4249 0.8547 -3.0476 19 1 9.4423 -0.6253 -4.6985 20 1 9.1409 1.7731 -4.8883 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 4.1673 0.6342 -0.0006 27 1 3.2975 3.8144 1.2257 28 1 4.7633 5.7905 1.2256 29 1 6.8983 5.7465 0.0044 30 1 7.5776 3.7279 -1.2270 31 1 7.2369 -1.3154 -3.5043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385694656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:49 Heat of formation + Delta-G solvation = -64.184334 kcal Electronic energy + Delta-G solvation = -16538.574980 eV Core-core repulsion = 13718.400881 eV Total energy + Delta-G solvation = -2820.174099 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82533 -38.22347 -36.76503 -35.41572 -34.17667 -33.65430 -30.76036 -29.50710 -27.26390 -24.59672 -23.48707 -22.69321 -19.81120 -19.29570 -19.09417 -17.60076 -17.32830 -16.29045 -16.17778 -15.85217 -15.61449 -15.45367 -15.35096 -14.72982 -14.34367 -14.15338 -13.55580 -13.38778 -13.12642 -13.03260 -12.61314 -12.54456 -12.35630 -12.18765 -12.13900 -11.60991 -11.38456 -11.02566 -10.73598 -9.61740 -9.25149 -8.42993 -8.40064 -6.04153 0.56044 0.70935 0.83399 1.40238 1.49398 1.53826 1.55426 2.22131 2.85697 2.97484 3.20441 3.49189 3.99931 4.08225 4.19547 4.28851 4.32428 4.54077 4.65363 4.74465 4.92265 5.00800 5.12558 5.17160 5.19991 5.35777 5.54855 5.75262 5.80824 6.07097 6.11778 6.35691 7.05526 7.84868 8.81776 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.020753 B = 0.007025 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.848729 B = 3984.872683 C = 5259.994131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.485 4.485 3 S 1.538 4.462 4 O -0.943 6.943 5 N -0.954 5.954 6 C 0.107 3.893 7 C -0.147 4.147 8 C -0.162 4.162 9 C -0.095 4.095 10 C -0.221 4.221 11 C 0.088 3.912 12 O -0.217 6.217 13 C -0.410 4.410 14 H 0.099 0.901 15 C -0.017 4.017 16 N -0.915 5.915 17 Si 1.012 2.988 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.258 1.258 21 H 0.097 0.903 22 H 0.077 0.923 23 H 0.047 0.953 24 H 0.132 0.868 25 H 0.067 0.933 26 H 0.400 0.600 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.126 0.874 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 5.267 -0.046 9.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.623 4.623 3 S 1.642 4.358 4 O -0.928 6.928 5 N -0.693 5.693 6 C 0.009 3.991 7 C -0.169 4.169 8 C -0.181 4.181 9 C -0.114 4.114 10 C -0.241 4.241 11 C 0.035 3.965 12 O -0.123 6.123 13 C -0.486 4.486 14 H 0.116 0.884 15 C -0.215 4.215 16 N -0.553 5.553 17 Si 0.832 3.168 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.182 1.182 21 H 0.116 0.884 22 H 0.096 0.904 23 H 0.066 0.934 24 H 0.150 0.850 25 H 0.086 0.914 26 H 0.230 0.770 27 H 0.154 0.846 28 H 0.165 0.835 29 H 0.165 0.835 30 H 0.144 0.856 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.855 5.826 -0.062 10.600 hybrid contribution 1.623 -2.011 1.401 2.940 sum -7.233 3.815 1.340 8.286 Atomic orbital electron populations 1.21388 0.89983 1.04234 1.03405 1.27989 1.05760 1.20893 1.07629 1.69951 0.75451 0.85717 1.04660 1.92831 1.80042 1.69889 1.49997 1.50373 1.21017 1.10188 1.87740 1.16931 0.91134 0.89521 1.01528 1.21305 1.02436 0.93417 0.99762 1.20971 0.95214 0.98620 1.03281 1.21103 0.96748 0.97280 0.96307 1.21246 1.01689 0.94414 1.06776 1.19655 0.94257 0.88390 0.94211 1.83887 1.42257 1.30534 1.55643 1.21714 1.00147 1.03834 1.22897 0.88373 1.26380 1.02751 0.94122 0.98281 1.70146 1.40055 1.05382 1.39720 0.84729 0.75896 0.78396 0.77748 1.18793 1.19946 1.18192 0.88406 0.90433 0.93365 0.84982 0.91363 0.77008 0.84597 0.83538 0.83491 0.85603 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.92 71.98 0.71 -1.76 16 2 C -0.48 -11.86 6.70 71.98 0.48 -11.38 16 3 S 1.54 44.88 13.56 -56.49 -0.77 44.11 16 4 O -0.94 -36.74 15.62 -148.98 -2.33 -39.07 16 5 N -0.95 -36.98 5.55 -51.02 -0.28 -37.26 16 6 C 0.11 4.63 6.42 38.30 0.25 4.88 16 7 C -0.15 -5.71 9.25 22.38 0.21 -5.50 16 8 C -0.16 -5.46 10.04 22.29 0.22 -5.23 16 9 C -0.10 -3.29 10.04 22.28 0.22 -3.06 16 10 C -0.22 -9.41 9.16 22.37 0.21 -9.21 16 11 C 0.09 4.27 6.67 22.69 0.15 4.42 16 12 O -0.22 -12.16 9.32 -22.99 -0.21 -12.37 16 13 C -0.41 -22.68 9.49 67.91 0.64 -22.04 16 14 H 0.10 5.02 5.21 -2.91 -0.02 5.00 16 15 C -0.02 -0.94 5.49 84.83 0.47 -0.48 16 16 N -0.91 -52.99 13.67 21.61 0.30 -52.69 16 17 Si 1.01 41.28 29.55 68.60 2.03 43.30 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 21 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 24 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.40 16.20 8.50 -96.75 -0.82 15.38 16 27 H 0.14 5.31 5.62 -2.91 -0.02 5.29 16 28 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 29 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 30 H 0.13 5.33 5.64 -2.91 -0.02 5.31 16 31 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -74.14 281.87 2.63 -71.51 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.34 Total: 31.84 kcal Atomic # 6 Polarization: -52.93 SS G_CDS: 3.56 Total: -49.37 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: 0.01 Total: -89.95 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -2.54 Total: -51.44 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 44.88 SS G_CDS: -0.77 Total: 44.11 kcal Total: -74.14 2.63 -71.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385694656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.327 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds