Wall clock time and date at job start Mon Mar 30 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81403 * 109.47393 * 2 1 4 4 O 1.42097 * 109.47008 * 70.94214 * 3 2 1 5 5 N 1.65603 * 102.99953 * 180.02562 * 3 2 1 6 6 C 1.39663 * 119.99681 * 180.02562 * 5 3 2 7 7 C 1.39007 * 120.04442 * 315.01472 * 6 5 3 8 8 C 1.38143 * 120.06592 * 179.97438 * 7 6 5 9 9 C 1.38174 * 120.14227 * 359.72767 * 8 7 6 10 10 C 1.38912 * 120.07871 * 0.55434 * 9 8 7 11 11 O 1.35751 * 120.03093 * 179.72008 * 10 9 8 12 12 C 1.34833 * 117.00044 * 174.18559 * 11 10 9 13 13 H 1.08001 * 119.99756 * 5.05336 * 12 11 10 14 14 C 1.38647 * 120.00273 * 185.05790 * 12 11 10 15 15 N 1.31562 * 119.99649 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00109 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47261 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46962 * 119.99922 * 16 14 12 19 19 H 1.48505 * 109.47000 * 239.99558 * 16 14 12 20 20 C 1.38756 * 120.04075 * 134.99764 * 6 5 3 21 21 H 1.08998 * 109.46989 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47114 * 300.00097 * 1 2 3 23 23 H 1.08994 * 109.47146 * 59.99799 * 1 2 3 24 24 H 1.09004 * 109.46978 * 239.99365 * 2 1 3 25 25 H 1.09008 * 109.47185 * 120.00290 * 2 1 3 26 26 H 0.97005 * 119.99995 * 359.97438 * 5 3 2 27 27 H 1.08000 * 119.96090 * 0.02562 * 7 6 5 28 28 H 1.07999 * 119.92920 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.96054 * 180.29241 * 9 8 7 30 30 H 0.96998 * 119.99725 * 180.02562 * 15 14 12 31 31 H 1.07995 * 120.07056 * 0.04191 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8802 2.3026 1.2663 5 7 3.7802 1.5235 -0.0007 6 6 4.6104 2.6466 -0.0004 7 6 4.3394 3.7127 -0.8503 8 6 5.1599 4.8240 -0.8499 9 6 6.2489 4.8822 -0.0014 10 6 6.5286 3.8178 0.8462 11 8 7.6020 3.8736 1.6754 12 6 7.7485 2.8631 2.5560 13 1 7.0767 2.0181 2.5248 14 6 8.7614 2.9089 3.5017 15 7 9.5800 3.9381 3.5394 16 14 8.9638 1.5092 4.7221 17 1 7.9235 0.4795 4.4714 18 1 10.3099 0.9031 4.5613 19 1 8.8186 2.0327 6.1042 20 6 5.7066 2.6999 0.8487 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5140 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.1674 0.6341 -0.0006 27 1 3.4859 3.6723 -1.5109 28 1 4.9471 5.6512 -1.5108 29 1 6.8857 5.7545 -0.0001 30 1 10.2888 3.9700 4.2007 31 1 5.9197 1.8729 1.5097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385760376.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:54 Heat of formation + Delta-G solvation = -71.656577 kcal Electronic energy + Delta-G solvation = -16225.002859 eV Core-core repulsion = 13404.504739 eV Total energy + Delta-G solvation = -2820.498120 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 255.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82259 -38.58506 -36.85327 -35.34501 -34.23592 -33.63522 -30.78291 -29.77945 -27.35688 -24.64362 -23.39767 -22.82044 -20.16023 -19.26972 -19.07452 -17.65823 -16.90633 -16.79110 -16.28588 -15.96535 -15.83619 -15.56703 -15.34170 -14.60545 -14.52477 -13.96292 -13.71853 -13.50237 -13.22438 -13.04061 -12.80171 -12.60684 -12.43278 -12.19923 -12.16033 -11.75652 -11.39694 -11.17979 -10.81298 -9.48190 -9.20781 -8.81955 -8.53628 -6.22124 0.36652 0.70109 0.95427 1.26415 1.35710 1.44309 1.54090 2.10793 2.77423 2.98900 3.13520 3.50601 3.99096 4.08688 4.12745 4.25685 4.35330 4.51981 4.56957 4.72580 4.93422 5.01880 5.03862 5.05702 5.21934 5.26920 5.58944 5.66833 5.70312 5.98039 6.09308 6.35233 6.91144 7.72097 8.69733 Molecular weight = 255.07amu Principal moments of inertia in cm(-1) A = 0.023617 B = 0.005744 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.314524 B = 4873.195625 C = 5848.616566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.485 4.485 3 S 1.546 4.454 4 O -0.961 6.961 5 N -0.961 5.961 6 C 0.216 3.784 7 C -0.224 4.224 8 C -0.038 4.038 9 C -0.223 4.223 10 C 0.130 3.870 11 O -0.229 6.229 12 C -0.415 4.415 13 H 0.090 0.910 14 C -0.019 4.019 15 N -0.916 5.916 16 Si 1.016 2.984 17 H -0.262 1.262 18 H -0.259 1.259 19 H -0.267 1.267 20 C -0.282 4.282 21 H 0.078 0.922 22 H 0.035 0.965 23 H 0.103 0.897 24 H 0.154 0.846 25 H 0.063 0.937 26 H 0.406 0.594 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.119 0.881 30 H 0.274 0.726 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.757 -7.401 -14.058 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.623 4.623 3 S 1.651 4.349 4 O -0.945 6.945 5 N -0.702 5.702 6 C 0.118 3.882 7 C -0.245 4.245 8 C -0.056 4.056 9 C -0.244 4.244 10 C 0.079 3.921 11 O -0.136 6.136 12 C -0.492 4.492 13 H 0.108 0.892 14 C -0.217 4.217 15 N -0.554 5.554 16 Si 0.836 3.164 17 H -0.186 1.186 18 H -0.184 1.184 19 H -0.192 1.192 20 C -0.305 4.305 21 H 0.097 0.903 22 H 0.054 0.946 23 H 0.122 0.878 24 H 0.172 0.828 25 H 0.082 0.918 26 H 0.238 0.762 27 H 0.189 0.811 28 H 0.190 0.810 29 H 0.137 0.863 30 H 0.083 0.917 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.996 -6.183 -13.825 22.764 hybrid contribution 1.438 -2.177 2.963 3.948 sum -15.558 -8.360 -10.862 20.734 Atomic orbital electron populations 1.21421 0.90692 1.04240 1.03221 1.28029 1.05304 1.20647 1.08296 1.69528 0.75248 0.85724 1.04434 1.92943 1.80010 1.71307 1.50268 1.50706 1.21242 1.10071 1.88174 1.17292 0.89815 0.88606 0.92472 1.21187 1.05302 0.94873 1.03186 1.21085 0.91053 0.98023 0.95439 1.20578 1.03294 0.98216 1.02271 1.19841 0.86839 0.94440 0.91016 1.83939 1.39476 1.46363 1.43788 1.21731 1.16924 0.99198 1.11312 0.89227 1.26516 0.94623 1.01383 0.99197 1.70171 1.17805 1.31361 1.36027 0.84579 0.79145 0.76008 0.76701 1.18616 1.18366 1.19175 1.21156 1.02521 1.00689 1.06177 0.90330 0.94577 0.87815 0.82800 0.91802 0.76209 0.81079 0.80967 0.86329 0.91654 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.92 71.98 0.71 -1.03 16 2 C -0.48 -7.43 6.70 71.98 0.48 -6.95 16 3 S 1.55 33.32 13.10 -56.49 -0.74 32.58 16 4 O -0.96 -37.55 17.97 -148.98 -2.68 -40.23 16 5 N -0.96 -26.71 5.67 -51.41 -0.29 -27.00 16 6 C 0.22 7.91 6.20 38.20 0.24 8.14 16 7 C -0.22 -6.60 9.40 22.43 0.21 -6.39 16 8 C -0.04 -1.18 10.03 22.23 0.22 -0.96 16 9 C -0.22 -9.56 9.99 22.42 0.22 -9.34 16 10 C 0.13 6.82 6.64 22.56 0.15 6.97 16 11 O -0.23 -14.46 9.76 -22.78 -0.22 -14.68 16 12 C -0.42 -25.75 9.49 67.92 0.64 -25.11 16 13 H 0.09 5.30 5.20 -2.91 -0.02 5.29 16 14 C -0.02 -1.15 5.49 84.83 0.47 -0.68 16 15 N -0.92 -57.80 13.67 21.61 0.30 -57.50 16 16 Si 1.02 45.44 29.55 68.60 2.03 47.46 16 17 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 C -0.28 -13.47 9.09 22.52 0.20 -13.27 16 21 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 22 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 23 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.41 9.78 8.76 -96.74 -0.85 8.94 16 27 H 0.17 3.05 7.69 -2.91 -0.02 3.03 16 28 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 30 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.10 5.24 5.64 -2.91 -0.02 5.22 16 Total: -1.00 -91.19 286.41 2.25 -88.94 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.31 Total: 19.06 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 3.56 Total: -48.62 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: 0.00 Total: -84.50 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -2.90 Total: -54.91 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 33.32 SS G_CDS: -0.74 Total: 32.58 kcal Total: -91.19 2.25 -88.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385760376.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.283 kcal (2) G-P(sol) polarization free energy of solvation -91.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds