Wall clock time and date at job start Mon Mar 30 2020 04:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37705 * 120.03028 * 2 1 4 4 C 1.38747 * 120.34486 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 119.78961 * 179.97438 * 4 3 2 6 6 C 1.38152 * 120.41630 * 359.97438 * 4 3 2 7 7 C 1.38836 * 120.05808 * 0.02562 * 6 4 3 8 8 N 1.38859 * 120.17212 * 180.02562 * 7 6 4 9 9 C 1.39820 * 120.03639 * 180.02562 * 2 1 3 10 10 C 1.47177 * 120.20657 * 359.97438 * 9 2 1 11 11 O 1.21565 * 119.99760 * 89.99513 * 10 9 2 12 12 O 1.34797 * 120.00575 * 270.00488 * 10 9 2 13 13 C 1.34860 * 117.00342 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00409 * 359.97438 * 13 12 10 15 15 C 1.38791 * 119.99887 * 179.97438 * 13 12 10 16 16 N 1.31432 * 120.00047 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00000 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46717 * 89.99723 * 17 15 13 19 19 H 1.48493 * 109.46988 * 210.00058 * 17 15 13 20 20 H 1.48492 * 109.46891 * 330.00190 * 17 15 13 21 21 H 1.08994 * 109.47028 * 90.00400 * 1 2 3 22 22 H 1.09000 * 109.46861 * 210.00233 * 1 2 3 23 23 H 1.08997 * 109.47710 * 330.00172 * 1 2 3 24 24 H 1.07994 * 119.82464 * 359.74420 * 3 2 1 25 25 H 1.07995 * 119.97173 * 179.97438 * 6 4 3 26 26 H 0.97001 * 119.99835 * 179.97438 * 8 7 6 27 27 H 0.96994 * 119.99637 * 359.97438 * 8 7 6 28 28 H 0.97007 * 119.99838 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1922 0.0000 4 6 3.5836 1.1998 -0.0005 5 17 4.4378 2.7111 -0.0012 6 6 4.2896 0.0123 -0.0005 7 6 3.6120 -1.1995 -0.0005 8 7 4.3192 -2.3945 0.0000 9 6 2.2069 -1.2104 -0.0005 10 6 1.4764 -2.4881 -0.0005 11 8 1.1743 -3.0155 -1.0534 12 8 1.1422 -3.0736 1.1668 13 6 0.4733 -4.2424 1.0961 14 1 0.2289 -4.6676 0.1338 15 6 0.0989 -4.8992 2.2601 16 7 0.3958 -4.3816 3.4312 17 14 -0.8283 -6.5179 2.1623 18 1 0.1410 -7.6426 2.1345 19 1 -1.7116 -6.6548 3.3481 20 1 -1.6511 -6.5431 0.9265 21 1 -0.3633 -0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3634 0.8899 0.5138 24 1 1.6538 2.1261 -0.0042 25 1 5.3694 0.0266 -0.0014 26 1 3.8433 -3.2397 0.0004 27 1 5.2891 -2.3840 0.0000 28 1 0.1345 -4.8409 4.2447 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389619929.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:56 Heat of formation + Delta-G solvation = -91.614510 kcal Electronic energy + Delta-G solvation = -16357.151099 eV Core-core repulsion = 13397.910738 eV Total energy + Delta-G solvation = -2959.240361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 255.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53177 -39.99205 -37.63891 -37.12989 -36.06295 -34.33088 -33.13981 -30.42959 -28.23731 -27.52090 -24.81465 -22.60499 -21.85196 -19.90852 -18.97288 -18.36923 -17.89997 -17.12985 -16.36233 -16.28377 -15.90343 -15.45531 -15.11628 -14.81646 -14.32428 -13.86855 -13.71456 -13.47385 -13.18380 -13.03724 -12.92733 -12.62059 -12.37325 -12.20476 -12.04568 -11.91599 -11.26231 -11.15738 -10.72280 -9.71946 -8.70511 -8.55300 -6.36612 -0.06026 0.42764 1.03068 1.21972 1.33714 1.50668 1.55367 2.08805 2.47504 2.74934 2.83555 2.95004 3.64943 4.10743 4.16585 4.25284 4.49469 4.56227 4.66106 4.70714 4.91263 5.07485 5.14737 5.18630 5.42813 5.58370 5.78580 6.21371 6.54503 6.74335 6.88098 7.72071 8.63770 Molecular weight = 255.04amu Principal moments of inertia in cm(-1) A = 0.037107 B = 0.005431 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.392275 B = 5154.246960 C = 5334.405673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.000 4.000 3 C -0.170 4.170 4 C 0.032 3.968 5 Cl -0.049 7.049 6 C -0.196 4.196 7 C 0.260 3.740 8 N -0.855 5.855 9 C -0.201 4.201 10 C 0.458 3.542 11 O -0.575 6.575 12 O -0.232 6.232 13 C -0.423 4.423 14 H 0.083 0.917 15 C 0.000 4.000 16 N -0.898 5.898 17 Si 1.016 2.984 18 H -0.258 1.258 19 H -0.261 1.261 20 H -0.263 1.263 21 H 0.086 0.914 22 H 0.037 0.963 23 H 0.107 0.893 24 H 0.163 0.837 25 H 0.164 0.836 26 H 0.397 0.603 27 H 0.418 0.582 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 10.266 -4.163 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.001 4.001 3 C -0.191 4.191 4 C 0.005 3.995 5 Cl -0.020 7.020 6 C -0.219 4.219 7 C 0.151 3.849 8 N -0.392 5.392 9 C -0.208 4.208 10 C 0.306 3.694 11 O -0.473 6.473 12 O -0.139 6.139 13 C -0.499 4.499 14 H 0.101 0.899 15 C -0.201 4.201 16 N -0.535 5.535 17 Si 0.835 3.165 18 H -0.183 1.183 19 H -0.185 1.185 20 H -0.188 1.188 21 H 0.104 0.896 22 H 0.056 0.944 23 H 0.126 0.874 24 H 0.180 0.820 25 H 0.182 0.818 26 H 0.225 0.775 27 H 0.250 0.750 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.792 10.233 -4.178 12.973 hybrid contribution -0.185 -1.182 0.006 1.197 sum 6.607 9.051 -4.172 11.957 Atomic orbital electron populations 1.20913 0.89883 1.03421 1.03392 1.19767 0.96701 0.90457 0.93175 1.20696 0.91974 0.97916 1.08484 1.20740 0.92224 0.87095 0.99483 1.98361 1.77023 1.30063 1.96571 1.20446 1.01129 0.88093 1.12243 1.17542 0.88547 0.88106 0.90736 1.42346 1.09951 1.04750 1.82154 1.18802 0.92608 0.91188 1.18172 1.21297 0.79794 0.85892 0.82370 1.90627 1.56440 1.66293 1.33917 1.84102 1.62560 1.35101 1.32178 1.21460 1.36250 0.97014 0.95174 0.89936 1.26535 0.97303 1.03152 0.93080 1.70089 1.44490 1.40553 0.98337 0.84650 0.77973 0.75037 0.78883 1.18297 1.18479 1.18761 0.89563 0.94401 0.87403 0.81956 0.81817 0.77549 0.75005 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 9.62 71.24 0.69 -3.33 15 2 C 0.00 0.01 5.91 -19.61 -0.12 -0.11 15 3 C -0.17 -4.78 9.45 22.27 0.21 -4.57 15 4 C 0.03 0.85 6.32 22.37 0.14 0.99 15 5 Cl -0.05 -1.04 28.94 -2.72 -0.08 -1.12 15 6 C -0.20 -5.39 9.65 22.39 0.22 -5.18 15 7 C 0.26 9.09 6.77 38.73 0.26 9.35 15 8 N -0.85 -26.89 8.99 -50.92 -0.46 -27.35 15 9 C -0.20 -8.49 5.77 -19.99 -0.12 -8.60 15 10 C 0.46 23.97 4.54 70.17 0.32 24.29 15 11 O -0.57 -32.57 16.36 19.62 0.32 -32.25 15 12 O -0.23 -13.81 9.75 10.62 0.10 -13.71 15 13 C -0.42 -25.54 9.65 67.95 0.66 -24.88 15 14 H 0.08 5.04 6.86 -2.91 -0.02 5.02 15 15 C 0.00 0.02 5.50 84.89 0.47 0.48 15 16 N -0.90 -52.79 13.67 21.63 0.30 -52.50 15 17 Si 1.02 42.88 29.55 68.60 2.03 44.91 15 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 20 H -0.26 -10.91 7.11 99.48 0.71 -10.20 15 21 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 22 H 0.04 1.57 7.09 -2.39 -0.02 1.55 15 23 H 0.11 2.75 8.08 -2.39 -0.02 2.73 15 24 H 0.16 3.51 8.06 -2.91 -0.02 3.49 15 25 H 0.16 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.40 14.60 7.68 -92.71 -0.71 13.89 15 27 H 0.42 9.36 8.83 -92.71 -0.82 8.55 15 28 H 0.28 14.87 8.31 -92.70 -0.77 14.10 15 Total: -1.00 -72.09 272.85 4.63 -67.46 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.30 Total: 26.11 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 2.72 Total: -11.56 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -0.16 Total: -79.85 kcal Atomic # 8 Polarization: -46.38 SS G_CDS: 0.42 Total: -45.96 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -72.09 4.63 -67.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389619929.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.153 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds